From 721edecb61950e3c032d61cdb669027fd915a49f Mon Sep 17 00:00:00 2001 From: acoca Date: Wed, 30 Oct 2024 12:02:15 +0000 Subject: [PATCH 01/22] add icenet python api uuid --- misc/uuid/gen_uuid.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/misc/uuid/gen_uuid.py b/misc/uuid/gen_uuid.py index b412b7ff..8cec317b 100644 --- a/misc/uuid/gen_uuid.py +++ b/misc/uuid/gen_uuid.py @@ -205,6 +205,7 @@ def gen_new_uuid_edsbook(): 'ac327c3a-5264-40a2-8c6e-1e8d7c4b37ef', '94486a7f-e046-461f-bbb9-334ec7b57040', 'bc30df18-fce2-42fa-aade-1ce5b7f3ca3c', '15d986da-2d7c-44fb-af71-700494485def', 'a2875cdc-ba6a-49dc-aab7-cdf7c4fc0fa8', '1b8921af-e77f-4ccf-ae38-4813cdceba0f', - 'b34facfa-cea8-48f5-89f6-f11ce00812a9', '93463cac-471a-469d-ad52-0514fd9b67f2'] + 'b34facfa-cea8-48f5-89f6-f11ce00812a9', '93463cac-471a-469d-ad52-0514fd9b67f2', + '67a1e320-7c47-4ea9-8df8-e868326bc90b'] gen_new_uuid_edsbook() From 481f14746509d792109d50e74df3c15abcd8fade Mon Sep 17 00:00:00 2001 From: acoca Date: Wed, 30 Oct 2024 12:09:09 +0000 Subject: [PATCH 02/22] add deepforest livestock uuid --- misc/uuid/gen_uuid.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/misc/uuid/gen_uuid.py b/misc/uuid/gen_uuid.py index 8cec317b..45da3882 100644 --- a/misc/uuid/gen_uuid.py +++ b/misc/uuid/gen_uuid.py @@ -206,6 +206,6 @@ def gen_new_uuid_edsbook(): 'bc30df18-fce2-42fa-aade-1ce5b7f3ca3c', '15d986da-2d7c-44fb-af71-700494485def', 'a2875cdc-ba6a-49dc-aab7-cdf7c4fc0fa8', '1b8921af-e77f-4ccf-ae38-4813cdceba0f', 'b34facfa-cea8-48f5-89f6-f11ce00812a9', '93463cac-471a-469d-ad52-0514fd9b67f2', - '67a1e320-7c47-4ea9-8df8-e868326bc90b'] + '67a1e320-7c47-4ea9-8df8-e868326bc90b', '95199651-9e81-4cae-a3a7-66398a9a5f62'] gen_new_uuid_edsbook() From d670298b24b561f2f75e86d5f6371966c64c2e17 Mon Sep 17 00:00:00 2001 From: acocac Date: Mon, 2 Dec 2024 18:30:09 -0500 Subject: [PATCH 03/22] add to submodules postprint branch --- .gitmodules | 4 ++++ 95199651-9e81-4cae-a3a7-66398a9a5f62 | 1 + 2 files changed, 5 insertions(+) create mode 160000 95199651-9e81-4cae-a3a7-66398a9a5f62 diff --git a/.gitmodules b/.gitmodules index 65bc6cb0..a662f908 100644 --- a/.gitmodules +++ b/.gitmodules @@ -54,3 +54,7 @@ path = book/notebooks/gallery/67a1e320-7c47-4ea9-8df8-e868326bc90b url = https://github.com/eds-book-gallery/67a1e320-7c47-4ea9-8df8-e868326bc90b.git branch = render +[submodule "95199651-9e81-4cae-a3a7-66398a9a5f62"] + path = 95199651-9e81-4cae-a3a7-66398a9a5f62 + url = https://github.com/eds-book-gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 + branch = postprint diff --git a/95199651-9e81-4cae-a3a7-66398a9a5f62 b/95199651-9e81-4cae-a3a7-66398a9a5f62 new file mode 160000 index 00000000..bfe1d995 --- /dev/null +++ b/95199651-9e81-4cae-a3a7-66398a9a5f62 @@ -0,0 +1 @@ +Subproject commit bfe1d9957d086630bc91293d8195c56aba02ae42 From 935b3f6ffe3234420a27adf5608ea0e4df33ad10 Mon Sep 17 00:00:00 2001 From: acocac Date: Mon, 2 Dec 2024 18:37:02 -0500 Subject: [PATCH 04/22] remove submodule from wrong location --- .gitmodules | 4 ---- 95199651-9e81-4cae-a3a7-66398a9a5f62 | 1 - 2 files changed, 5 deletions(-) delete mode 160000 95199651-9e81-4cae-a3a7-66398a9a5f62 diff --git a/.gitmodules b/.gitmodules index a662f908..65bc6cb0 100644 --- a/.gitmodules +++ b/.gitmodules @@ -54,7 +54,3 @@ path = book/notebooks/gallery/67a1e320-7c47-4ea9-8df8-e868326bc90b url = https://github.com/eds-book-gallery/67a1e320-7c47-4ea9-8df8-e868326bc90b.git branch = render -[submodule "95199651-9e81-4cae-a3a7-66398a9a5f62"] - path = 95199651-9e81-4cae-a3a7-66398a9a5f62 - url = https://github.com/eds-book-gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 - branch = postprint diff --git a/95199651-9e81-4cae-a3a7-66398a9a5f62 b/95199651-9e81-4cae-a3a7-66398a9a5f62 deleted file mode 160000 index bfe1d995..00000000 --- a/95199651-9e81-4cae-a3a7-66398a9a5f62 +++ /dev/null @@ -1 +0,0 @@ -Subproject commit bfe1d9957d086630bc91293d8195c56aba02ae42 From 1328387fe6381f108781a8cd49ff3eb9dcf0daca Mon Sep 17 00:00:00 2001 From: acocac Date: Mon, 2 Dec 2024 18:38:06 -0500 Subject: [PATCH 05/22] add to submodules fixed location postprint branch --- .gitmodules | 4 ++++ book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 | 1 + 2 files changed, 5 insertions(+) create mode 160000 book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 diff --git a/.gitmodules b/.gitmodules index 65bc6cb0..a665cd8e 100644 --- a/.gitmodules +++ b/.gitmodules @@ -54,3 +54,7 @@ path = book/notebooks/gallery/67a1e320-7c47-4ea9-8df8-e868326bc90b url = https://github.com/eds-book-gallery/67a1e320-7c47-4ea9-8df8-e868326bc90b.git branch = render +[submodule "book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62"] + path = book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 + url = https://github.com/eds-book-gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 + branch = postprint diff --git a/book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 b/book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 new file mode 160000 index 00000000..bfe1d995 --- /dev/null +++ b/book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 @@ -0,0 +1 @@ +Subproject commit bfe1d9957d086630bc91293d8195c56aba02ae42 From 7ef6a5c8d9c0affcfb73275627d40415be6a44c7 Mon Sep 17 00:00:00 2001 From: acocac Date: Mon, 2 Dec 2024 18:38:19 -0500 Subject: [PATCH 06/22] add notebook to _toc.yml --- book/_toc.yml | 2 ++ 1 file changed, 2 insertions(+) diff --git a/book/_toc.yml b/book/_toc.yml index 75f58b45..a44f82e9 100644 --- a/book/_toc.yml +++ b/book/_toc.yml @@ -23,6 +23,8 @@ parts: - file: notebooks/gallery title: Gallery sections: + - file: notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62/notebook + title: Livestock detection (DeepForest) - file: notebooks/gallery/67a1e320-7c47-4ea9-8df8-e868326bc90b/notebook title: Daily sea ice forecasting (IceNet) - file: notebooks/gallery/39d9c177-11da-41b2-9b64-63f4c1c834b3/notebook From e48a47eb3eeb143dcfcc559b2914e6d6a10342a4 Mon Sep 17 00:00:00 2001 From: acocac Date: Mon, 2 Dec 2024 20:20:23 -0500 Subject: [PATCH 07/22] add notebook uuid in Weinstein2020_MEE --- book/_bibliography/references.bib | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/book/_bibliography/references.bib b/book/_bibliography/references.bib index 678ebb93..75165fd8 100644 --- a/book/_bibliography/references.bib +++ b/book/_bibliography/references.bib @@ -93,7 +93,7 @@ @article{Weinstein2020_MEE volume = {11}, url = {https://besjournals.onlinelibrary.wiley.com/doi/abs/10.1111/2041-210X.13472}, year = {2020}, - topic = {15d986da-2d7c-44fb-af71-700494485def} + topic = {15d986da-2d7c-44fb-af71-700494485def, 95199651-9e81-4cae-a3a7-66398a9a5f62} } @article{Weinstein2020_EI, From f9e68541a15c95bb43d70fe10801c237c0e749cd Mon Sep 17 00:00:00 2001 From: acocac Date: Mon, 2 Dec 2024 20:20:34 -0500 Subject: [PATCH 08/22] add dataset reference --- book/_bibliography/references.bib | 13 +++++++++++++ 1 file changed, 13 insertions(+) diff --git a/book/_bibliography/references.bib b/book/_bibliography/references.bib index 75165fd8..01003e0b 100644 --- a/book/_bibliography/references.bib +++ b/book/_bibliography/references.bib @@ -437,4 +437,17 @@ @misc{cocacastro2024_icenetnb doi = {10.5281/zenodo.10808514}, url = {https://doi.org/10.5281/zenodo.10808514}, topic = {67a1e320-7c47-4ea9-8df8-e868326bc90b} +} + +### 95199651-9e81-4cae-a3a7-66398a9a5f62 + +@data{livestockdataset, + author = {G.J. Franke and Sander Mucher}, + publisher = {Harvard Dataverse}, + title = {{Annotated cows in aerial images for use in deep learning models}}, + year = {2021}, + version = {V1}, + doi = {10.7910/DVN/N7GJYU}, + url = {https://doi.org/10.7910/DVN/N7GJYU}, + topic = {95199651-9e81-4cae-a3a7-66398a9a5f62} } \ No newline at end of file From 31ddca97a625c4ccbd824eff91b37f3fe21d8a44 Mon Sep 17 00:00:00 2001 From: acocac Date: Mon, 2 Dec 2024 20:29:58 -0500 Subject: [PATCH 09/22] update submodule with references --- book/notebooks/gallery/67a1e320-7c47-4ea9-8df8-e868326bc90b | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/book/notebooks/gallery/67a1e320-7c47-4ea9-8df8-e868326bc90b b/book/notebooks/gallery/67a1e320-7c47-4ea9-8df8-e868326bc90b index 6e38225e..50154723 160000 --- a/book/notebooks/gallery/67a1e320-7c47-4ea9-8df8-e868326bc90b +++ b/book/notebooks/gallery/67a1e320-7c47-4ea9-8df8-e868326bc90b @@ -1 +1 @@ -Subproject commit 6e38225e9abb162569ddfc01f3b9bd17da84b122 +Subproject commit 501547232a75237238f40fb5866c105a0209199e From 267f24091fd129bb92dd02f95a5a6b3c5538a7db Mon Sep 17 00:00:00 2001 From: acocac Date: Mon, 2 Dec 2024 20:32:01 -0500 Subject: [PATCH 10/22] add card --- book/notebooks/gallery.md | 36 ++++++++++++++++++++++++++++++++++++ 1 file changed, 36 insertions(+) diff --git a/book/notebooks/gallery.md b/book/notebooks/gallery.md index 5d091e2e..6f81706e 100644 --- a/book/notebooks/gallery.md +++ b/book/notebooks/gallery.md @@ -5,6 +5,42 @@ ::::{grid} 1 3 3 3 :gutter: 2 +:::{grid-item-card} Livestock detection
(DeepForest) +:margin: 3 0 0 0 +:link: ./gallery/95199651-9e81-4cae-a3a7-66398a9a5f62/notebook.html +:link-type: url +:text-align: center +:shadow: md + +{bdg-primary}`Farming` +{bdg-secondary}`Modelling` +
+{bdg-warning}`Standard` +{bdg-info}`Python` +^^^ + + + ++++ +Appel (2024) + +

+ + License + + + binder + + + render + + + doi + +
+

+::: + :::{grid-item-card} Daily sea ice forecasting
(IceNet library) :margin: 3 0 0 0 :link: ./gallery/67a1e320-7c47-4ea9-8df8-e868326bc90b/notebook.html From 32fb4c3fc9dd698f1bd804210256650689e695c5 Mon Sep 17 00:00:00 2001 From: acocac Date: Mon, 2 Dec 2024 20:33:29 -0500 Subject: [PATCH 11/22] update submodule with all references --- book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 b/book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 index bfe1d995..000ba596 160000 --- a/book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 +++ b/book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 @@ -1 +1 @@ -Subproject commit bfe1d9957d086630bc91293d8195c56aba02ae42 +Subproject commit 000ba5965ba33073668c73342175ea7ae8bed9d5 From 87dbacbb46c2c36a60bd0a2bb106a53dbde4f508 Mon Sep 17 00:00:00 2001 From: acocac Date: Tue, 3 Dec 2024 15:26:10 -0500 Subject: [PATCH 12/22] rm submodule wrong branch --- .gitmodules | 4 ---- book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 | 1 - 2 files changed, 5 deletions(-) delete mode 160000 book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 diff --git a/.gitmodules b/.gitmodules index a665cd8e..65bc6cb0 100644 --- a/.gitmodules +++ b/.gitmodules @@ -54,7 +54,3 @@ path = book/notebooks/gallery/67a1e320-7c47-4ea9-8df8-e868326bc90b url = https://github.com/eds-book-gallery/67a1e320-7c47-4ea9-8df8-e868326bc90b.git branch = render -[submodule "book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62"] - path = book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 - url = https://github.com/eds-book-gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 - branch = postprint diff --git a/book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 b/book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 deleted file mode 160000 index 000ba596..00000000 --- a/book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 +++ /dev/null @@ -1 +0,0 @@ -Subproject commit 000ba5965ba33073668c73342175ea7ae8bed9d5 From 707924b372692ea8f0e30ae95dc0d8190355bfdd Mon Sep 17 00:00:00 2001 From: acocac Date: Tue, 3 Dec 2024 15:39:08 -0500 Subject: [PATCH 13/22] add submodule preview branch --- .gitmodules | 4 ++++ book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 | 1 + 2 files changed, 5 insertions(+) create mode 160000 book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 diff --git a/.gitmodules b/.gitmodules index 65bc6cb0..0a9dc511 100644 --- a/.gitmodules +++ b/.gitmodules @@ -54,3 +54,7 @@ path = book/notebooks/gallery/67a1e320-7c47-4ea9-8df8-e868326bc90b url = https://github.com/eds-book-gallery/67a1e320-7c47-4ea9-8df8-e868326bc90b.git branch = render +[submodule "book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62"] + path = book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 + url = https://github.com/eds-book-gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 + branch = preview diff --git a/book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 b/book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 new file mode 160000 index 00000000..69973671 --- /dev/null +++ b/book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 @@ -0,0 +1 @@ +Subproject commit 6997367170bce6c8f13f7844d74857cabc9949e7 From cb79558459596321798bb1c26ea0dd83d05097a1 Mon Sep 17 00:00:00 2001 From: acocac Date: Tue, 3 Dec 2024 15:45:11 -0500 Subject: [PATCH 14/22] fix reference type, data not supported --- book/_bibliography/references.bib | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/book/_bibliography/references.bib b/book/_bibliography/references.bib index 01003e0b..6e1b1e6e 100644 --- a/book/_bibliography/references.bib +++ b/book/_bibliography/references.bib @@ -441,7 +441,7 @@ @misc{cocacastro2024_icenetnb ### 95199651-9e81-4cae-a3a7-66398a9a5f62 -@data{livestockdataset, +@misc{livestockdataset, author = {G.J. Franke and Sander Mucher}, publisher = {Harvard Dataverse}, title = {{Annotated cows in aerial images for use in deep learning models}}, From d13be77c16853556c0a8d6c4bac76a60ffd45bae Mon Sep 17 00:00:00 2001 From: acocac Date: Tue, 3 Dec 2024 16:13:40 -0500 Subject: [PATCH 15/22] update submodule with hidden-inputs --- book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 b/book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 index 69973671..664563ca 160000 --- a/book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 +++ b/book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 @@ -1 +1 @@ -Subproject commit 6997367170bce6c8f13f7844d74857cabc9949e7 +Subproject commit 664563cadd1c8a0b3493527f7f599e12b3806487 From 6234e36376960ae71db50659aca57807336696b2 Mon Sep 17 00:00:00 2001 From: acocac Date: Tue, 3 Dec 2024 16:23:35 -0500 Subject: [PATCH 16/22] update submodule with hidden-inputs --- book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 b/book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 index 664563ca..e4dc21a2 160000 --- a/book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 +++ b/book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 @@ -1 +1 @@ -Subproject commit 664563cadd1c8a0b3493527f7f599e12b3806487 +Subproject commit e4dc21a279537b8065a84d732475fe9e64c81cc5 From 4e6e7dd63d143779e0647bc3b3e8bba93d7d0011 Mon Sep 17 00:00:00 2001 From: acocac Date: Tue, 3 Dec 2024 16:43:41 -0500 Subject: [PATCH 17/22] update submodule with fixed heading levels --- book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 b/book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 index e4dc21a2..08363d93 160000 --- a/book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 +++ b/book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 @@ -1 +1 @@ -Subproject commit e4dc21a279537b8065a84d732475fe9e64c81cc5 +Subproject commit 08363d936c547e4251cfd63381286adc253a65d3 From a9821ba5d8c45ce0509147200c60b006810588ba Mon Sep 17 00:00:00 2001 From: acocac Date: Tue, 3 Dec 2024 16:53:44 -0500 Subject: [PATCH 18/22] update submodule with missing fixed heading levels --- book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 b/book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 index 08363d93..0caf3ac8 160000 --- a/book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 +++ b/book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 @@ -1 +1 @@ -Subproject commit 08363d936c547e4251cfd63381286adc253a65d3 +Subproject commit 0caf3ac809b59d2506e5529d1e0d15ee48a97dc2 From b68703e5bc5debd744ad2e4e8e25f34cf1b70f26 Mon Sep 17 00:00:00 2001 From: acocac Date: Wed, 4 Dec 2024 19:07:02 -0500 Subject: [PATCH 19/22] update badges in gallery --- book/notebooks/gallery.md | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/book/notebooks/gallery.md b/book/notebooks/gallery.md index 6f81706e..b48bdeae 100644 --- a/book/notebooks/gallery.md +++ b/book/notebooks/gallery.md @@ -25,17 +25,17 @@ Appel (2024)

- + License - + binder - - render + + render - - doi + + doi

From e74cb45378f9f7f0d8b91124a74ab2b5b3a0bcf8 Mon Sep 17 00:00:00 2001 From: acocac Date: Wed, 4 Dec 2024 19:07:27 -0500 Subject: [PATCH 20/22] update registry in rohub --- misc/rohub/register.py | 57 ++++++++++++++++++------------------------ 1 file changed, 25 insertions(+), 32 deletions(-) diff --git a/misc/rohub/register.py b/misc/rohub/register.py index c6d10dd6..40ef9380 100644 --- a/misc/rohub/register.py +++ b/misc/rohub/register.py @@ -10,27 +10,27 @@ # metadata metadata_contribution = { - 'environment': 'polar', + 'environment': 'farming', 'topic': 'modelling', - 'reponame': '67a1e320-7c47-4ea9-8df8-e868326bc90b', - 'title': "Sea ice forecasting using the IceNet library", - 'inputs': {'input1':{'name':'Codebase of the IceNet library', - 'url':'https://github.com/icenet-ai/icenet/'}, + 'reponame': '95199651-9e81-4cae-a3a7-66398a9a5f62', + 'title': "Livestock detection using DeepForest", + 'inputs': {'input1':{'name':'Input dataset for the fine-tuned model', + 'url':'https://doi.org/10.7910/DVN/N7GJYU'}, }, 'outputs': {'content': 'results', - 'url': "https://doi.org/10.5281/zenodo.12612126"}, + 'url': "https://doi.org/10.5281/zenodo.14279111"}, 'author_GHuser': 'eds-book-gallery', - 'references':{'ref1':{'name':'Seasonal Arctic sea ice forecasting with probabilistic deep learning', - 'url':"https://doi.org/10.1038/s41467-021-25257-4"}}, - 'sketch': {'title':'Image showing an example of the forecasted sea ice', - 'path':'_temp/rohub/67a1e320-7c47-4ea9-8df8-e868326bc90b/plot.png'} + 'references':{'ref1':{'name':'Deepforest: a python package for rgb deep learning tree crown delineation', + 'url':"https://doi.org/https://doi.org/10.1111/2041-210X.13472"}}, + 'sketch': {'title':'Image showing an example of the finetuned model predictions to detect livestock', + 'path':'_temp/rohub/95199651-9e81-4cae-a3a7-66398a9a5f62/plot.png'} } title_nb = metadata_contribution['title'] metadata_rohub = { 'title': f'{title_nb} (Jupyter Notebook) published in the Environmental Data Science book', - 'research_areas': ['Environmental research', 'Oceanography', 'Deep learning'], + 'research_areas': ['Environmental research', 'Agriculture', 'Deep learning'], 'description': f'The research object refers to the {title_nb} notebook published in the Environmental Data Science book.', 'ros_type': 'Executable Research Object', 'ros_template': 'Executable Research Object folders structure', @@ -48,34 +48,27 @@ # edition authors=[ {"agent_type": "user", - "display_name": "Bryn Noel Ubald", - "name": "Bryn Noel Ubald", - "email": "bryald@bas.ac.uk", - "orcid_id": "0000-0002-0206-7140", - "affiliation": "British Antarctic Survey"}, - {"agent_type": "user", - "display_name": "James Byrne", - "name": "James Byrne", - "email": "jambyr@bas.ac.uk", - "orcid_id": "0000-0003-3731-2377", - "affiliation": "British Antarctic Survey"}, + "display_name": "Cameron Appel", + "name": "Cameron Appel", + "email": "c.appel@qmul.ac.uk", + "affiliation": "Queen Mary University London"}, ] ro.set_authors(agents=authors) reviewers=[ {"agent_type": "user", - "display_name": "Wei Ji", - "name": "Wei Ji", - "email": "weiji@developmentseed.org", - "orcid_id": "0000-0003-2354-1988", - "affiliation": "Development Seed"}, + "display_name": "Ethan P. White", + "name": "Ethan P. White", + "email": "ethanwhite@ufl.edu", + "orcid_id": "0000-0001-6728-7745", + "affiliation": "University of Florida"}, {"agent_type": "user", - "display_name": "William Gregory", - "name": "William Gregory", - "email": "wg4031@princeton.edu", - "orcid_id": "0000-0001-8176-1642", - "affiliation": "Princeton University"}, + "display_name": "Louisa Van Zeeland", + "name": "Louisa Van Zeeland", + "email": "lvanzeeland@turing.ac.uk", + "orcid_id": "0009-0005-0392-4377", + "affiliation": "The Alan Turing Institute"}, ] ro.set_contributors(agents=reviewers) From 0470d1c40ce8026dffc70714a9b6a791c8a1abd8 Mon Sep 17 00:00:00 2001 From: acocac Date: Wed, 4 Dec 2024 19:12:12 -0500 Subject: [PATCH 21/22] update branch to render --- .gitmodules | 2 +- book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/.gitmodules b/.gitmodules index 0a9dc511..0b6da147 100644 --- a/.gitmodules +++ b/.gitmodules @@ -57,4 +57,4 @@ [submodule "book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62"] path = book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 url = https://github.com/eds-book-gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 - branch = preview + branch = render diff --git a/book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 b/book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 index 0caf3ac8..db650b73 160000 --- a/book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 +++ b/book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 @@ -1 +1 @@ -Subproject commit 0caf3ac809b59d2506e5529d1e0d15ee48a97dc2 +Subproject commit db650b7385ccb350b2291fbdac9f6ed9c746cefe From 573c9efba258c29753575aaaca0892f0a3a6ac0c Mon Sep 17 00:00:00 2001 From: acocac Date: Wed, 4 Dec 2024 19:26:39 -0500 Subject: [PATCH 22/22] update submodule f834435 --- book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 b/book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 index db650b73..f834435f 160000 --- a/book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 +++ b/book/notebooks/gallery/95199651-9e81-4cae-a3a7-66398a9a5f62 @@ -1 +1 @@ -Subproject commit db650b7385ccb350b2291fbdac9f6ed9c746cefe +Subproject commit f834435f45fde0684f7490c7caf4bdd5787f7286