diff --git a/.gitmodules b/.gitmodules index 9f908466..65bc6cb0 100644 --- a/.gitmodules +++ b/.gitmodules @@ -50,3 +50,7 @@ path = book/notebooks/gallery/39d9c177-11da-41b2-9b64-63f4c1c834b3 url = https://github.com/eds-book-gallery/39d9c177-11da-41b2-9b64-63f4c1c834b3.git branch = render +[submodule "book/notebooks/gallery/67a1e320-7c47-4ea9-8df8-e868326bc90b"] + path = book/notebooks/gallery/67a1e320-7c47-4ea9-8df8-e868326bc90b + url = https://github.com/eds-book-gallery/67a1e320-7c47-4ea9-8df8-e868326bc90b.git + branch = render diff --git a/book/_bibliography/references.bib b/book/_bibliography/references.bib index 489cf3ac..678ebb93 100644 --- a/book/_bibliography/references.bib +++ b/book/_bibliography/references.bib @@ -139,7 +139,7 @@ @article{Andersson2021 volume = {12}, url = {https://doi.org/10.1038/s41467-021-25257-4}, year = {2021}, - topic = {ac327c3a-5264-40a2-8c6e-1e8d7c4b37ef} + topic = {ac327c3a-5264-40a2-8c6e-1e8d7c4b37ef, 67a1e320-7c47-4ea9-8df8-e868326bc90b} } ## 1b8921af-e77f-4ccf-ae38-4813cdceba0f @@ -420,4 +420,21 @@ @article{filoche_2023 year={2023}, pages={e2}, topic = {39d9c177-11da-41b2-9b64-63f4c1c834b3} - } \ No newline at end of file + } + +### 67a1e320-7c47-4ea9-8df8-e868326bc90b + +@misc{cocacastro2024_icenetnb, + author = {Coca-Castro, Alejandro and + This EDS book notebook contributors}, + title = {{Sea ice forecasting using IceNet (Jupyter + Notebook) published in the Environmental Data + Science book}}, + month = mar, + year = {2024}, + publisher = {Zenodo}, + version = {v1.0.5}, + doi = {10.5281/zenodo.10808514}, + url = {https://doi.org/10.5281/zenodo.10808514}, + topic = {67a1e320-7c47-4ea9-8df8-e868326bc90b} +} \ No newline at end of file diff --git a/book/_toc.yml b/book/_toc.yml index 386304d1..75f58b45 100644 --- a/book/_toc.yml +++ b/book/_toc.yml @@ -23,6 +23,8 @@ parts: - file: notebooks/gallery title: Gallery sections: + - file: notebooks/gallery/67a1e320-7c47-4ea9-8df8-e868326bc90b/notebook + title: Daily sea ice forecasting (IceNet) - file: notebooks/gallery/39d9c177-11da-41b2-9b64-63f4c1c834b3/notebook title: Variational data assimilation with deep prior (CIRC23) - file: notebooks/gallery/93463cac-471a-469d-ad52-0514fd9b67f2/notebook @@ -36,7 +38,7 @@ parts: - file: notebooks/gallery/ea34568e-d86e-4720-be2f-3f826f66a26c/notebook title: Rainfall NCEP/NCAR (NOAA) - file: notebooks/gallery/ac327c3a-5264-40a2-8c6e-1e8d7c4b37ef/notebook - title: Sea ice forecasting (IceNet) + title: Monthly sea ice forecasting (IceNet) - file: notebooks/gallery/94486a7f-e046-461f-bbb9-334ec7b57040/notebook title: Tree crown (DetectreeRGB) - file: notebooks/gallery/bc30df18-fce2-42fa-aade-1ce5b7f3ca3c/notebook diff --git a/book/notebooks/gallery.md b/book/notebooks/gallery.md index e97ad7ce..5d091e2e 100644 --- a/book/notebooks/gallery.md +++ b/book/notebooks/gallery.md @@ -5,6 +5,42 @@ ::::{grid} 1 3 3 3 :gutter: 2 +:::{grid-item-card} Daily sea ice forecasting
(IceNet library) +:margin: 3 0 0 0 +:link: ./gallery/67a1e320-7c47-4ea9-8df8-e868326bc90b/notebook.html +:link-type: url +:text-align: center +:shadow: md + +{bdg-primary}`Polar` +{bdg-secondary}`Modelling` +
+{bdg-warning}`Standard` +{bdg-info}`Python` +^^^ + + + ++++ +Byrne & Ubald (2024) + +

+ + license + + + binder + + + render + + + doi + +
+

+::: + :::{grid-item-card} Variational data assimilation with deep prior (CIRC23) :margin: 3 0 0 0 :link: ./gallery/39d9c177-11da-41b2-9b64-63f4c1c834b3/notebook.html @@ -100,7 +136,7 @@ Malhotra *et al.* (2023) license - + binder @@ -221,7 +257,7 @@ Lam *et al.* (2022)

::: -:::{grid-item-card} Sea ice forecasting
(IceNet) +:::{grid-item-card} Monthly sea ice forecasting
(IceNet) :margin: 3 0 0 0 :link: ./gallery/ac327c3a-5264-40a2-8c6e-1e8d7c4b37ef/notebook.html :link-type: url diff --git a/book/notebooks/gallery/67a1e320-7c47-4ea9-8df8-e868326bc90b b/book/notebooks/gallery/67a1e320-7c47-4ea9-8df8-e868326bc90b new file mode 160000 index 00000000..6e38225e --- /dev/null +++ b/book/notebooks/gallery/67a1e320-7c47-4ea9-8df8-e868326bc90b @@ -0,0 +1 @@ +Subproject commit 6e38225e9abb162569ddfc01f3b9bd17da84b122 diff --git a/book/publishing/guidelines/guidelines-eic.md b/book/publishing/guidelines/guidelines-eic.md index 7e07de21..712c35b7 100644 --- a/book/publishing/guidelines/guidelines-eic.md +++ b/book/publishing/guidelines/guidelines-eic.md @@ -30,12 +30,7 @@ Before moving to PRE-REVIEW, EiC open a new issue `Preparation` in the notebook ``` ## Pre-review -EiC open a PRE-REVIEW issue containing all relevant information of the notebook including a link to the notebook idea issue. - -Copy and paste the markdown below in the issue: - -```{include} ../../templates/editor-in-chief/eic-prereview-template.md -``` +EiC open a [PRE-REVIEW issue](https://github.com/alan-turing-institute/environmental-ds-book/issues/new?assignees=&labels=prereview&projects=&template=prereview-template.md&title=%5BPRE+REVIEW%5D) containing all relevant information of the notebook including a link to the notebook idea issue. EiC assign an editor to moderate the review and find reviewers. @@ -47,11 +42,7 @@ After the editor acceptance, EiC will update the heading at the top of the issue Once reviewers agreed on the revision, EiC open a REVIEW issue. ## Review -The REVIEW issue aims to be a space where editor will moderate timings and conversation between authors and reviewers. -EiC open it and replace the default first comment the markdown template below: - -```{include} ../../templates/editor-in-chief/eic-review-template.md -``` +The [REVIEW issue](https://github.com/alan-turing-institute/environmental-ds-book/issues/new?assignees=&labels=review&projects=&template=review-template.md&title=%5BREVIEW%5D) aims to be a space where editor will moderate timings and conversation between authors and reviewers. To facilitate the discussion, EiC creates a new branch `review` to add reviewers info (name, affiliation, GitHub handle) in the contribution section of the notebook. Then EiC commit and push changes to create a PR in the notebook repository. diff --git a/misc/rohub/register.py b/misc/rohub/register.py index f2934300..c6d10dd6 100644 --- a/misc/rohub/register.py +++ b/misc/rohub/register.py @@ -10,20 +10,20 @@ # metadata metadata_contribution = { - 'environment': 'ocean', + 'environment': 'polar', 'topic': 'modelling', - 'reponame': '39d9c177-11da-41b2-9b64-63f4c1c834b3', - 'title': "Variational data assimilation with deep prior (CIRC23)", - 'inputs': {'input1':{'name':'Codebase of the reproduced paper', - 'url':'https://github.com/ArFiloche/Deepprior4DVar_CI22'}, + 'reponame': '67a1e320-7c47-4ea9-8df8-e868326bc90b', + 'title': "Sea ice forecasting using the IceNet library", + 'inputs': {'input1':{'name':'Codebase of the IceNet library', + 'url':'https://github.com/icenet-ai/icenet/'}, }, - 'outputs': {'content': 'figures, models and results', - 'url': "https://doi.org/10.5281/zenodo.8338556"}, + 'outputs': {'content': 'results', + 'url': "https://doi.org/10.5281/zenodo.12612126"}, 'author_GHuser': 'eds-book-gallery', - 'references':{'ref1':{'name':'Deep prior in variational assimilation to estimate an ocean circulation without explicit regularization', - 'url':"http://doi.org/10.1017/eds.2022.31"}}, - 'sketch': {'title':'Image showing an example of the estimated motion fields with various algorithms', - 'path':'_temp/rohub/39d9c177-11da-41b2-9b64-63f4c1c834b3/plot.png'} + 'references':{'ref1':{'name':'Seasonal Arctic sea ice forecasting with probabilistic deep learning', + 'url':"https://doi.org/10.1038/s41467-021-25257-4"}}, + 'sketch': {'title':'Image showing an example of the forecasted sea ice', + 'path':'_temp/rohub/67a1e320-7c47-4ea9-8df8-e868326bc90b/plot.png'} } title_nb = metadata_contribution['title'] @@ -48,40 +48,34 @@ # edition authors=[ {"agent_type": "user", - "display_name": "Mukulika Pahari", - "name": "Mukulika Pahari", - "email": "mukulikapahari@gmail.com", - "orcid_id": None, - "affiliation": "University of Mumbai"}, + "display_name": "Bryn Noel Ubald", + "name": "Bryn Noel Ubald", + "email": "bryald@bas.ac.uk", + "orcid_id": "0000-0002-0206-7140", + "affiliation": "British Antarctic Survey"}, {"agent_type": "user", - "display_name": "Rutika Bhoir", - "name": "Rutika Bhoir", - "email": "rutikabhoir1316@gmail.com", - "orcid_id": None, - "affiliation": "University of Mumbai"}, + "display_name": "James Byrne", + "name": "James Byrne", + "email": "jambyr@bas.ac.uk", + "orcid_id": "0000-0003-3731-2377", + "affiliation": "British Antarctic Survey"}, ] ro.set_authors(agents=authors) reviewers=[ {"agent_type": "user", - "display_name": "Tina Odaka", - "name": "Tina Odaka", - "email": "tina.odaka@ifremer.fr", - "orcid_id": "0000-0002-1500-0156", - "affiliation": "Ifremer"}, + "display_name": "Wei Ji", + "name": "Wei Ji", + "email": "weiji@developmentseed.org", + "orcid_id": "0000-0003-2354-1988", + "affiliation": "Development Seed"}, {"agent_type": "user", - "display_name": "Caroline Arnold", - "name": "Caroline Arnold", - "email": "arnold@dkrz.de", - "orcid_id": "0000-0002-9458-1517", - "affiliation": "German Climate Computing Center"}, - {"agent_type": "user", - "display_name": "Paolo Pelucchi", - "name": "Paolo Pelucchi", - "email": "paolo.pelucchi@uv.es", - "orcid_id": None, - "affiliation": "Universitat de València"}, + "display_name": "William Gregory", + "name": "William Gregory", + "email": "wg4031@princeton.edu", + "orcid_id": "0000-0001-8176-1642", + "affiliation": "Princeton University"}, ] ro.set_contributors(agents=reviewers)