From 9260b8181b06910a405ef23a214bc9d4b5331d5c Mon Sep 17 00:00:00 2001 From: Ahmed Awan Date: Tue, 10 Dec 2024 09:32:40 -0600 Subject: [PATCH 1/9] [24.2] Fix inconsistent tab handling in invocation view Fixes https://github.com/galaxyproject/galaxy/issues/19286 --- .../WorkflowInvocationState.vue | 29 +++++++++++++------ 1 file changed, 20 insertions(+), 9 deletions(-) diff --git a/client/src/components/WorkflowInvocationState/WorkflowInvocationState.vue b/client/src/components/WorkflowInvocationState/WorkflowInvocationState.vue index 83248eec6e61..8c59c416c789 100644 --- a/client/src/components/WorkflowInvocationState/WorkflowInvocationState.vue +++ b/client/src/components/WorkflowInvocationState/WorkflowInvocationState.vue @@ -67,22 +67,22 @@ watch( ); const workflowStore = useWorkflowStore(); -const reportTabDisabled = computed( +const tabsDisabled = computed( () => !invocationStateSuccess.value || !invocation.value || !workflowStore.getStoredWorkflowByInstanceId(invocation.value.workflow_id) ); -/** Tooltip message for the report tab when it is disabled */ -const disabledReportTooltip = computed(() => { +/** Tooltip message for the a tab when it is disabled */ +const disabledTabTooltip = computed(() => { const state = invocationState.value; if (state != "scheduled") { return `This workflow is not currently scheduled. The current state is ${state}. Once the workflow is fully scheduled and jobs have complete this option will become available.`; } else if (runningCount.value != 0) { return `The workflow invocation still contains ${runningCount.value} running job(s). Once these jobs have completed this option will become available.`; } else { - return "Steps for this workflow are still running. A report will be available once complete."; + return "Steps for this workflow are still running. This option will be available once complete."; } }); @@ -333,22 +333,32 @@ async function onCancel() { - + +
@@ -387,7 +397,8 @@ async function onCancel() { From eade161ca221e5f99ea22ef636f351a5d5954538 Mon Sep 17 00:00:00 2001 From: Ahmed Awan Date: Tue, 10 Dec 2024 19:01:52 -0600 Subject: [PATCH 7/9] fix seleniums to wait for disabled tabs in invocation view --- lib/galaxy_test/selenium/test_workflow_run.py | 2 ++ 1 file changed, 2 insertions(+) diff --git a/lib/galaxy_test/selenium/test_workflow_run.py b/lib/galaxy_test/selenium/test_workflow_run.py index c47b835f47c3..36a4a60af080 100644 --- a/lib/galaxy_test/selenium/test_workflow_run.py +++ b/lib/galaxy_test/selenium/test_workflow_run.py @@ -37,6 +37,7 @@ class TestWorkflowRun(SeleniumTestCase, UsesHistoryItemAssertions, RunsWorkflows def test_workflow_export_file_rocrate(self): self._setup_simple_invocation_for_export_testing() invocations = self.components.invocations + self.workflow_run_wait_for_ok(hid=2) invocations.export_tab.wait_for_and_click() self.screenshot("invocation_export_formats") invocations.export_output_format(type="ro-crate").wait_for_and_click() @@ -60,6 +61,7 @@ def test_workflow_export_file_rocrate(self): def test_workflow_export_file_native(self): self._setup_simple_invocation_for_export_testing() invocations = self.components.invocations + self.workflow_run_wait_for_ok(hid=2) invocations.export_tab.wait_for_and_click() self.screenshot("invocation_export_formats") invocations.export_output_format(type="default-file").wait_for_and_click() From db7395b42378fe8aec00a5d25e452e033bc19164 Mon Sep 17 00:00:00 2001 From: Matthias Bernt Date: Wed, 11 Dec 2024 10:47:48 +0100 Subject: [PATCH 8/9] Create version 24.1.4 --- lib/galaxy/version.py | 2 +- packages/app/HISTORY.rst | 68 ++++++++++++++++++++++++++++-- packages/app/setup.cfg | 2 +- packages/auth/HISTORY.rst | 8 ++-- packages/auth/setup.cfg | 2 +- packages/config/HISTORY.rst | 28 ++++++++++-- packages/config/setup.cfg | 2 +- packages/data/HISTORY.rst | 41 ++++++++++++++++-- packages/data/setup.cfg | 4 +- packages/files/HISTORY.rst | 11 +++-- packages/files/setup.cfg | 2 +- packages/job_execution/HISTORY.rst | 12 ++++-- packages/job_execution/setup.cfg | 2 +- packages/job_metrics/HISTORY.rst | 8 ++-- packages/job_metrics/setup.cfg | 2 +- packages/navigation/HISTORY.rst | 8 ++-- packages/navigation/setup.cfg | 2 +- packages/objectstore/HISTORY.rst | 11 +++-- packages/objectstore/setup.cfg | 2 +- packages/schema/HISTORY.rst | 23 ++++++++-- packages/schema/setup.cfg | 2 +- packages/selenium/HISTORY.rst | 11 +++-- packages/selenium/setup.cfg | 2 +- packages/test_api/HISTORY.rst | 25 +++++++++-- packages/test_api/setup.cfg | 2 +- packages/test_base/HISTORY.rst | 15 +++++-- packages/test_base/setup.cfg | 2 +- packages/test_driver/HISTORY.rst | 8 ++-- packages/test_driver/setup.cfg | 2 +- packages/tool_shed/HISTORY.rst | 8 ++-- packages/tool_shed/setup.cfg | 2 +- packages/tool_util/HISTORY.rst | 25 +++++++++-- packages/tool_util/setup.cfg | 2 +- packages/tours/HISTORY.rst | 8 ++-- packages/tours/setup.cfg | 2 +- packages/util/HISTORY.rst | 18 ++++++-- packages/util/setup.cfg | 2 +- packages/web_apps/HISTORY.rst | 42 ++++++++++++++++-- packages/web_apps/setup.cfg | 2 +- packages/web_framework/HISTORY.rst | 13 ++++-- packages/web_framework/setup.cfg | 2 +- packages/web_stack/HISTORY.rst | 8 ++-- packages/web_stack/setup.cfg | 2 +- 43 files changed, 351 insertions(+), 94 deletions(-) diff --git a/lib/galaxy/version.py b/lib/galaxy/version.py index 740e8c551091..a5268a98f85e 100644 --- a/lib/galaxy/version.py +++ b/lib/galaxy/version.py @@ -1,3 +1,3 @@ VERSION_MAJOR = "24.1" -VERSION_MINOR = "4.dev0" +VERSION_MINOR = "4" VERSION = VERSION_MAJOR + (f".{VERSION_MINOR}" if VERSION_MINOR else "") diff --git a/packages/app/HISTORY.rst b/packages/app/HISTORY.rst index 375aa8d9a32d..ffcbc878078b 100644 --- a/packages/app/HISTORY.rst +++ b/packages/app/HISTORY.rst @@ -3,11 +3,71 @@ History .. to_doc ------------ -24.1.4.dev0 ------------ +------------------- +24.1.4 (2024-12-11) +------------------- + + +========= +Bug fixes +========= + +* Replace busybox:ubuntu-14.04 image with busybox:1.36.1-glibc by `@mvdbeek `_ in `#18428 `_ +* Update mercurial to non-yanked 6.7.4 by `@nsoranzo `_ in `#18434 `_ +* Fix dropped when_expression on step upgrade by `@mvdbeek `_ in `#18446 `_ +* Improve workflow-related exception reporting by `@mvdbeek `_ in `#18447 `_ +* Fix subwofklow tags serialization type by `@arash77 `_ in `#18456 `_ +* by `@laperlej `_ in `#18459 `_ +* Add input extra files to `get_input_fnames` by `@mvdbeek `_ in `#18462 `_ +* Return generic message for password reset email by `@ahmedhamidawan `_ in `#18479 `_ +* Increase API robustness to invalid requests, improve compressed data serving by `@mvdbeek `_ in `#18494 `_ +* Don't call job_runner.stop_job on jobs in new state by `@mvdbeek `_ in `#18495 `_ +* Prevent job submission if input collection element is deleted by `@mvdbeek `_ in `#18517 `_ +* Strip unicode null from tool stdio by `@mvdbeek `_ in `#18527 `_ +* Fix map over calculation for runtime inputs by `@mvdbeek `_ in `#18535 `_ +* Fix for not-null in 'column_list' object by `@hujambo-dunia `_ in `#18553 `_ +* Also fail ``ensure_dataset_on_disk`` if dataset is in new state by `@mvdbeek `_ in `#18559 `_ +* Fix sqlalchemy statement in tooltagmanager reset output by `@dannon `_ in `#18591 `_ +* Set minimum weasyprint version by `@mvdbeek `_ in `#18606 `_ +* Improve relabel identifiers message when number of columns is not 2 by `@mvdbeek `_ in `#18634 `_ +* Fix extract workflow from history when implicit collection has no jobs by `@mvdbeek `_ in `#18661 `_ +* Make sure we set file size also for purged outputs by `@mvdbeek `_ in `#18681 `_ +* File source and object store instance api fixes by `@mvdbeek `_ in `#18685 `_ +* Fix change datatype PJA on expression tool data outputs by `@mvdbeek `_ in `#18691 `_ +* Fill in missing help for cross product tools. by `@jmchilton `_ in `#18698 `_ +* Fix subworkflow scheduling for delayed subworkflow steps connected to data inputs by `@mvdbeek `_ in `#18731 `_ +* Catch and display exceptions when importing malformatted yaml workflows by `@mvdbeek `_ in `#18734 `_ +* Fix infinitely delayed workflow scheduling if skipped step creates HDCA by `@mvdbeek `_ in `#18751 `_ +* Fix directory get or create logic by `@mvdbeek `_ in `#18752 `_ +* Fix job summary for optional unset job data inputs by `@mvdbeek `_ in `#18754 `_ +* Allow to change only the description of a quota by `@bernt-matthias `_ in `#18775 `_ +* Fix wrong extension on pick data output by `@mvdbeek `_ in `#18798 `_ +* Fix unspecified ``oidc_endpoint`` variable overwriting specified ``redirect_url`` by `@bgruening `_ in `#18818 `_ +* Fix wrong celery_app config on job and workflow handlers by `@mvdbeek `_ in `#18819 `_ +* Fix ``named cursor is not valid anymore`` by `@mvdbeek `_ in `#18825 `_ +* Tighten TRS url check by `@mvdbeek `_ in `#18841 `_ +* Fix Workflow index bookmark filter by `@itisAliRH `_ in `#18842 `_ +* Skip metric collection if job working directory doesn't exist by `@mvdbeek `_ in `#18845 `_ +* Extend on disk checks to running, queued and error states by `@mvdbeek `_ in `#18846 `_ +* Raise MessageException instead of assertions on rerun problems by `@mvdbeek `_ in `#18858 `_ +* Fix data_column ref to nested collection by `@mvdbeek `_ in `#18875 `_ +* Fix loading very old workflows with data inputs by `@mvdbeek `_ in `#18876 `_ +* Access tool data table filters in workflow building mode by `@mvdbeek `_ in `#18900 `_ +* Fix username used in invocation report by `@mvdbeek `_ in `#18932 `_ +* Disable locking when opening h5 files, add missing ``with`` by `@mvdbeek `_ in `#18976 `_ +* Fix job search statement building by `@mvdbeek `_ in `#19010 `_ +* Put cached jobs back into queue on handler restart by `@mvdbeek `_ in `#19012 `_ +* Fix various invocation export issues by `@mvdbeek `_ in `#19215 `_ +* Create harmonized collections from correct tool outputs by `@wm75 `_ in `#19222 `_ +============ +Enhancements +============ +* Include workflow invocation id in exception logs by `@mvdbeek `_ in `#18594 `_ +* Implemented the generic OIDC backend from python-social-auth into Gal… by `@Edmontosaurus `_ in `#18670 `_ +* Collect job metrics also when job failed by `@mvdbeek `_ in `#18809 `_ +* prevent "missing refresh_token" errors by supporting also with Keycloak backend by `@ljocha `_ in `#18826 `_ ------------------- 24.1.3 (2024-10-25) @@ -23,7 +83,7 @@ Bug fixes * Fix dropped when_expression on step upgrade by `@mvdbeek `_ in `#18446 `_ * Improve workflow-related exception reporting by `@mvdbeek `_ in `#18447 `_ * Fix subwofklow tags serialization type by `@arash77 `_ in `#18456 `_ -* by `@laperlej `_ in `#18459 `_ +* by `@laperlej `_ in `#18459 `_ * Add input extra files to `get_input_fnames` by `@mvdbeek `_ in `#18462 `_ * Return generic message for password reset email by `@ahmedhamidawan `_ in `#18479 `_ * Increase API robustness to invalid requests, improve compressed data serving by `@mvdbeek `_ in `#18494 `_ diff --git a/packages/app/setup.cfg b/packages/app/setup.cfg index dc0d88dd41a1..d723bfe5115c 100644 --- a/packages/app/setup.cfg +++ b/packages/app/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-app url = https://github.com/galaxyproject/galaxy -version = 24.1.4.dev0 +version = 24.1.4 [options] include_package_data = True diff --git a/packages/auth/HISTORY.rst b/packages/auth/HISTORY.rst index 467568076736..47c167e10964 100644 --- a/packages/auth/HISTORY.rst +++ b/packages/auth/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -24.1.4.dev0 ------------ - +------------------- +24.1.4 (2024-12-11) +------------------- +No recorded changes since last release ------------------- 24.1.3 (2024-10-25) diff --git a/packages/auth/setup.cfg b/packages/auth/setup.cfg index eb248d1816b0..da6a4ad77cf3 100644 --- a/packages/auth/setup.cfg +++ b/packages/auth/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-auth url = https://github.com/galaxyproject/galaxy -version = 24.1.4.dev0 +version = 24.1.4 [options] include_package_data = True diff --git a/packages/config/HISTORY.rst b/packages/config/HISTORY.rst index 8efec14afea1..41fd061d0cb4 100644 --- a/packages/config/HISTORY.rst +++ b/packages/config/HISTORY.rst @@ -3,11 +3,33 @@ History .. to_doc ------------ -24.1.4.dev0 ------------ +------------------- +24.1.4 (2024-12-11) +------------------- + + +========= +Bug fixes +========= + +* Replace busybox:ubuntu-14.04 image with busybox:1.36.1-glibc by `@mvdbeek `_ in `#18428 `_ +* Strip whitespace when listifying admin users by `@jdavcs `_ in `#18656 `_ +* Remove defaults channel for conda usage by `@bernt-matthias `_ in `#18859 `_ + +============ +Enhancements +============ + +* Make `default_panel_view` a `_by_host` option by `@natefoo `_ in `#18471 `_ +* More datatype deprecation warnings by `@mvdbeek `_ in `#18612 `_ +* Implemented the generic OIDC backend from python-social-auth into Gal… by `@Edmontosaurus `_ in `#18670 `_ +============= +Other changes +============= +* Backport pod5 datatype by `@TomHarrop `_ in `#18507 `_ +* Backport PR 18630 "Add BlobToolkit to the list of interactive tools" to release_24.1 by `@cat-bro `_ in `#18784 `_ ------------------- 24.1.3 (2024-10-25) diff --git a/packages/config/setup.cfg b/packages/config/setup.cfg index 2dc4e93d62d0..e9751e6b5f1d 100644 --- a/packages/config/setup.cfg +++ b/packages/config/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-config url = https://github.com/galaxyproject/galaxy -version = 24.1.4.dev0 +version = 24.1.4 [options] include_package_data = True diff --git a/packages/data/HISTORY.rst b/packages/data/HISTORY.rst index e5cfcbeed5de..c690e8b89ea3 100644 --- a/packages/data/HISTORY.rst +++ b/packages/data/HISTORY.rst @@ -3,11 +3,46 @@ History .. to_doc ------------ -24.1.4.dev0 ------------ +------------------- +24.1.4 (2024-12-11) +------------------- +========= +Bug fixes +========= + +* Replace busybox:ubuntu-14.04 image with busybox:1.36.1-glibc by `@mvdbeek `_ in `#18428 `_ +* Improve workflow-related exception reporting by `@mvdbeek `_ in `#18447 `_ +* Increase API robustness to invalid requests, improve compressed data serving by `@mvdbeek `_ in `#18494 `_ +* Prevent job submission if input collection element is deleted by `@mvdbeek `_ in `#18517 `_ +* Fix shared caches with extended metadata collection. by `@jmchilton `_ in `#18520 `_ +* Also check dataset.deleted when determining if data can be displayed by `@mvdbeek `_ in `#18547 `_ +* Fix for not-null in 'column_list' object by `@hujambo-dunia `_ in `#18553 `_ +* Fix h5ad metadata by `@nilchia `_ in `#18635 `_ +* Don't set file size to zero by `@mvdbeek `_ in `#18653 `_ +* Make sure we set file size also for purged outputs by `@mvdbeek `_ in `#18681 `_ +* Fix wrong extension on pick data output by `@mvdbeek `_ in `#18798 `_ +* Fix copying workflow with subworkflow step for step that you own by `@mvdbeek `_ in `#18802 `_ +* Make pylibmagic import optional by `@mvdbeek `_ in `#18813 `_ +* Ignore converted datasets in invalid input states by `@mvdbeek `_ in `#18850 `_ +* Fix discovered outputs with directory metadata and distributed object by `@mvdbeek `_ in `#18855 `_ +* Raise MessageException instead of assertions on rerun problems by `@mvdbeek `_ in `#18858 `_ +* Fix wrong final state when init_from is used by `@mvdbeek `_ in `#18871 `_ +* Fix history import when parent_hda not serialized by `@mvdbeek `_ in `#18873 `_ +* Limit max number of items in dataproviders by `@mvdbeek `_ in `#18881 `_ +* Allow cors in biom and q2view display applications by `@mvdbeek `_ in `#18890 `_ +* Disable locking when opening h5 files, add missing ``with`` by `@mvdbeek `_ in `#18976 `_ +* Optimize/fix sqlite hid update statement by `@mvdbeek `_ in `#19106 `_ +* Prefer auto-decompressed datatype when picking conversion target by `@mvdbeek `_ in `#19162 `_ +* Fix various invocation export issues by `@mvdbeek `_ in `#19215 `_ +* Fix bad merge conflict resolution by `@nsoranzo `_ in `#19297 `_ + +============= +Other changes +============= + +* Backport pod5 datatype by `@TomHarrop `_ in `#18507 `_ ------------------- 24.1.3 (2024-10-25) diff --git a/packages/data/setup.cfg b/packages/data/setup.cfg index e8d437ad8fb9..7307f46e392b 100644 --- a/packages/data/setup.cfg +++ b/packages/data/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-data url = https://github.com/galaxyproject/galaxy -version = 24.1.4.dev0 +version = 24.1.4 [options] include_package_data = True @@ -75,4 +75,4 @@ console_scripts = [options.packages.find] exclude = - tests* + tests* \ No newline at end of file diff --git a/packages/files/HISTORY.rst b/packages/files/HISTORY.rst index 87b49e4b0870..ac81f81f3c34 100644 --- a/packages/files/HISTORY.rst +++ b/packages/files/HISTORY.rst @@ -3,11 +3,16 @@ History .. to_doc ------------ -24.1.4.dev0 ------------ +------------------- +24.1.4 (2024-12-11) +------------------- + +========= +Bug fixes +========= +* Fix production_aws_private_bucket.yml by `@mvdbeek `_ in `#19155 `_ ------------------- 24.1.3 (2024-10-25) diff --git a/packages/files/setup.cfg b/packages/files/setup.cfg index 2df0e171f98a..d2b7d3e1ce8a 100644 --- a/packages/files/setup.cfg +++ b/packages/files/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-files url = https://github.com/galaxyproject/galaxy -version = 24.1.4.dev0 +version = 24.1.4 [options] include_package_data = True diff --git a/packages/job_execution/HISTORY.rst b/packages/job_execution/HISTORY.rst index 5eb53e4e1faf..51f89887e58a 100644 --- a/packages/job_execution/HISTORY.rst +++ b/packages/job_execution/HISTORY.rst @@ -3,11 +3,17 @@ History .. to_doc ------------ -24.1.4.dev0 ------------ +------------------- +24.1.4 (2024-12-11) +------------------- +========= +Bug fixes +========= + +* Add input extra files to `get_input_fnames` by `@mvdbeek `_ in `#18462 `_ +* Retry container monitor POST if it fails (don't assume it succeeded) by `@natefoo `_ in `#18863 `_ ------------------- 24.1.3 (2024-10-25) diff --git a/packages/job_execution/setup.cfg b/packages/job_execution/setup.cfg index 6a643765efc7..d2b8d0fa18a5 100644 --- a/packages/job_execution/setup.cfg +++ b/packages/job_execution/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-job-execution url = https://github.com/galaxyproject/galaxy -version = 24.1.4.dev0 +version = 24.1.4 [options] include_package_data = True diff --git a/packages/job_metrics/HISTORY.rst b/packages/job_metrics/HISTORY.rst index 580c4de9b2cf..8c2c8fbd3b32 100644 --- a/packages/job_metrics/HISTORY.rst +++ b/packages/job_metrics/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -24.1.4.dev0 ------------ - +------------------- +24.1.4 (2024-12-11) +------------------- +No recorded changes since last release ------------------- 24.1.3 (2024-10-25) diff --git a/packages/job_metrics/setup.cfg b/packages/job_metrics/setup.cfg index d439275d9d96..e051ba96b437 100644 --- a/packages/job_metrics/setup.cfg +++ b/packages/job_metrics/setup.cfg @@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-job-metrics url = https://github.com/galaxyproject/galaxy -version = 24.1.4.dev0 +version = 24.1.4 [options] include_package_data = True diff --git a/packages/navigation/HISTORY.rst b/packages/navigation/HISTORY.rst index 929a673f626c..e977aa60a401 100644 --- a/packages/navigation/HISTORY.rst +++ b/packages/navigation/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -24.1.4.dev0 ------------ - +------------------- +24.1.4 (2024-12-11) +------------------- +No recorded changes since last release ------------------- 24.1.3 (2024-10-25) diff --git a/packages/navigation/setup.cfg b/packages/navigation/setup.cfg index e693f6c2a025..ce3d7731334a 100644 --- a/packages/navigation/setup.cfg +++ b/packages/navigation/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-navigation url = https://github.com/galaxyproject/galaxy -version = 24.1.4.dev0 +version = 24.1.4 [options] include_package_data = True diff --git a/packages/objectstore/HISTORY.rst b/packages/objectstore/HISTORY.rst index c990081333a6..d7eb0602e49d 100644 --- a/packages/objectstore/HISTORY.rst +++ b/packages/objectstore/HISTORY.rst @@ -3,11 +3,16 @@ History .. to_doc ------------ -24.1.4.dev0 ------------ +------------------- +24.1.4 (2024-12-11) +------------------- +========= +Bug fixes +========= + +* Fix shared caches with extended metadata collection. by `@jmchilton `_ in `#18520 `_ ------------------- 24.1.3 (2024-10-25) diff --git a/packages/objectstore/setup.cfg b/packages/objectstore/setup.cfg index 39767e690994..5789981489a9 100644 --- a/packages/objectstore/setup.cfg +++ b/packages/objectstore/setup.cfg @@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-objectstore url = https://github.com/galaxyproject/galaxy -version = 24.1.4.dev0 +version = 24.1.4 [options] include_package_data = True diff --git a/packages/schema/HISTORY.rst b/packages/schema/HISTORY.rst index eb2810a260ae..d465442b7ad3 100644 --- a/packages/schema/HISTORY.rst +++ b/packages/schema/HISTORY.rst @@ -3,11 +3,28 @@ History .. to_doc ------------ -24.1.4.dev0 ------------ +------------------- +24.1.4 (2024-12-11) +------------------- + + +========= +Bug fixes +========= + +* Handle error when workflow is unowned in Invocation view by `@ahmedhamidawan `_ in `#18730 `_ +* Fix datatype validation of newly built collection by `@mvdbeek `_ in `#18738 `_ +* Fix job summary for optional unset job data inputs by `@mvdbeek `_ in `#18754 `_ +* Fix ``TypeError`` from Pydantic 2.9.0 by `@nsoranzo `_ in `#18788 `_ +* Fix wrong extension on pick data output by `@mvdbeek `_ in `#18798 `_ +* Make all fields optional for HelpForumPost by `@davelopez `_ in `#18839 `_ +* Remove the default `Incoming` suffix in `GenericModel` class by `@davelopez `_ in `#19174 `_ +============ +Enhancements +============ +* Include workflow invocation id in exception logs by `@mvdbeek `_ in `#18594 `_ ------------------- 24.1.3 (2024-10-25) diff --git a/packages/schema/setup.cfg b/packages/schema/setup.cfg index 9be5db3aa170..f43a50441388 100644 --- a/packages/schema/setup.cfg +++ b/packages/schema/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-schema url = https://github.com/galaxyproject/galaxy -version = 24.1.4.dev0 +version = 24.1.4 [options] include_package_data = True diff --git a/packages/selenium/HISTORY.rst b/packages/selenium/HISTORY.rst index ab2d98bc7149..09beb5764b64 100644 --- a/packages/selenium/HISTORY.rst +++ b/packages/selenium/HISTORY.rst @@ -3,11 +3,16 @@ History .. to_doc ------------ -24.1.4.dev0 ------------ +------------------- +24.1.4 (2024-12-11) +------------------- + +========= +Bug fixes +========= +* Persist uploaded data between Regular and Collection upload tabs by `@ahmedhamidawan `_ in `#19083 `_ ------------------- 24.1.3 (2024-10-25) diff --git a/packages/selenium/setup.cfg b/packages/selenium/setup.cfg index 7a3605e6f7d0..2e40c2ea81f9 100644 --- a/packages/selenium/setup.cfg +++ b/packages/selenium/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-selenium url = https://github.com/galaxyproject/galaxy -version = 24.1.4.dev0 +version = 24.1.4 [options] include_package_data = True diff --git a/packages/test_api/HISTORY.rst b/packages/test_api/HISTORY.rst index 8e637e4de771..e9fbd18b6f70 100644 --- a/packages/test_api/HISTORY.rst +++ b/packages/test_api/HISTORY.rst @@ -3,11 +3,30 @@ History .. to_doc ------------ -24.1.4.dev0 ------------ +------------------- +24.1.4 (2024-12-11) +------------------- + +========= +Bug fixes +========= +* Fix subwofklow tags serialization type by `@arash77 `_ in `#18456 `_ +* Prevent job submission if input collection element is deleted by `@mvdbeek `_ in `#18517 `_ +* Fix view parameter type in Job index API by `@davelopez `_ in `#18521 `_ +* Fix map over calculation for runtime inputs by `@mvdbeek `_ in `#18535 `_ +* Fix Archive header encoding by `@arash77 `_ in `#18583 `_ +* Don't set file size to zero by `@mvdbeek `_ in `#18653 `_ +* Fix extract workflow from history when implicit collection has no jobs by `@mvdbeek `_ in `#18661 `_ +* Fix change datatype PJA on expression tool data outputs by `@mvdbeek `_ in `#18691 `_ +* Fix subworkflow scheduling for delayed subworkflow steps connected to data inputs by `@mvdbeek `_ in `#18731 `_ +* Catch and display exceptions when importing malformatted yaml workflows by `@mvdbeek `_ in `#18734 `_ +* Fix infinitely delayed workflow scheduling if skipped step creates HDCA by `@mvdbeek `_ in `#18751 `_ +* Fix copying workflow with subworkflow step for step that you own by `@mvdbeek `_ in `#18802 `_ +* Raise MessageException instead of assertions on rerun problems by `@mvdbeek `_ in `#18858 `_ +* Fix data_column ref to nested collection by `@mvdbeek `_ in `#18875 `_ +* Access tool data table filters in workflow building mode by `@mvdbeek `_ in `#18900 `_ ------------------- 24.1.3 (2024-10-25) diff --git a/packages/test_api/setup.cfg b/packages/test_api/setup.cfg index db106db0ec15..24648c862353 100644 --- a/packages/test_api/setup.cfg +++ b/packages/test_api/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-test-api url = https://github.com/galaxyproject/galaxy -version = 24.1.4.dev0 +version = 24.1.4 [options] include_package_data = True diff --git a/packages/test_base/HISTORY.rst b/packages/test_base/HISTORY.rst index a1c6f403f305..c148366cc906 100644 --- a/packages/test_base/HISTORY.rst +++ b/packages/test_base/HISTORY.rst @@ -3,11 +3,20 @@ History .. to_doc ------------ -24.1.4.dev0 ------------ +------------------- +24.1.4 (2024-12-11) +------------------- + +========= +Bug fixes +========= +* Fix subwofklow tags serialization type by `@arash77 `_ in `#18456 `_ +* Fix infinitely delayed workflow scheduling if skipped step creates HDCA by `@mvdbeek `_ in `#18751 `_ +* Fix wrong extension on pick data output by `@mvdbeek `_ in `#18798 `_ +* Fix data_column ref to nested collection by `@mvdbeek `_ in `#18875 `_ +* Access tool data table filters in workflow building mode by `@mvdbeek `_ in `#18900 `_ ------------------- 24.1.3 (2024-10-25) diff --git a/packages/test_base/setup.cfg b/packages/test_base/setup.cfg index fafecda17787..3a33f6b61a2e 100644 --- a/packages/test_base/setup.cfg +++ b/packages/test_base/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-test-base url = https://github.com/galaxyproject/galaxy -version = 24.1.4.dev0 +version = 24.1.4 [options] include_package_data = True diff --git a/packages/test_driver/HISTORY.rst b/packages/test_driver/HISTORY.rst index 748d54ae2b23..d3a7928618ff 100644 --- a/packages/test_driver/HISTORY.rst +++ b/packages/test_driver/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -24.1.4.dev0 ------------ - +------------------- +24.1.4 (2024-12-11) +------------------- +No recorded changes since last release ------------------- 24.1.3 (2024-10-25) diff --git a/packages/test_driver/setup.cfg b/packages/test_driver/setup.cfg index 88114f539ba4..b0d583101fb4 100644 --- a/packages/test_driver/setup.cfg +++ b/packages/test_driver/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-test-driver url = https://github.com/galaxyproject/galaxy -version = 24.1.4.dev0 +version = 24.1.4 [options] include_package_data = True diff --git a/packages/tool_shed/HISTORY.rst b/packages/tool_shed/HISTORY.rst index 45265b23a40b..9316dc2b7b79 100644 --- a/packages/tool_shed/HISTORY.rst +++ b/packages/tool_shed/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -24.1.4.dev0 ------------ - +------------------- +24.1.4 (2024-12-11) +------------------- +No recorded changes since last release ------------------- 24.1.3 (2024-10-25) diff --git a/packages/tool_shed/setup.cfg b/packages/tool_shed/setup.cfg index a9b0ab22166b..7566e32446ff 100644 --- a/packages/tool_shed/setup.cfg +++ b/packages/tool_shed/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-tool-shed url = https://github.com/galaxyproject/galaxy -version = 24.1.4.dev0 +version = 24.1.4 [options] include_package_data = True diff --git a/packages/tool_util/HISTORY.rst b/packages/tool_util/HISTORY.rst index 40e993c63699..5dda63d564e5 100644 --- a/packages/tool_util/HISTORY.rst +++ b/packages/tool_util/HISTORY.rst @@ -3,11 +3,30 @@ History .. to_doc ------------ -24.1.4.dev0 ------------ +------------------- +24.1.4 (2024-12-11) +------------------- + +========= +Bug fixes +========= +* Handle all requests error in ``ApiBiotoolsMetadataSource._raw_get_metadata`` by `@nsoranzo `_ in `#18510 `_ +* xsd: allow `change_format` and `actions` also in statically defined collection elements, and break recursion by `@bernt-matthias `_ in `#18605 `_ +* Remove defaults channel for conda usage by `@bernt-matthias `_ in `#18859 `_ +* Don't check availability of shellescape by `@nsoranzo `_ in `#18954 `_ +* Backport 2 CI fixes by `@nsoranzo `_ in `#18973 `_ +* Disable locking when opening h5 files, add missing ``with`` by `@mvdbeek `_ in `#18976 `_ +* Fix extra call to test_data_path that requires an admin key by `@jmchilton `_ in `#19011 `_ +* flip default value for use_mamba to false by `@bgruening `_ in `#19295 `_ +* Linter: allow dynamic option definition by from_url by `@bernt-matthias `_ in `#19300 `_ + +============ +Enhancements +============ + +* Make `default_panel_view` a `_by_host` option by `@natefoo `_ in `#18471 `_ ------------------- 24.1.3 (2024-10-25) diff --git a/packages/tool_util/setup.cfg b/packages/tool_util/setup.cfg index b359c259b2bf..d530d408c93e 100644 --- a/packages/tool_util/setup.cfg +++ b/packages/tool_util/setup.cfg @@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-tool-util url = https://github.com/galaxyproject/galaxy -version = 24.1.4.dev0 +version = 24.1.4 [options] include_package_data = True diff --git a/packages/tours/HISTORY.rst b/packages/tours/HISTORY.rst index 4013128ac264..30cbb115430c 100644 --- a/packages/tours/HISTORY.rst +++ b/packages/tours/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -24.1.4.dev0 ------------ - +------------------- +24.1.4 (2024-12-11) +------------------- +No recorded changes since last release ------------------- 24.1.3 (2024-10-25) diff --git a/packages/tours/setup.cfg b/packages/tours/setup.cfg index 2cd4132a18c0..f765ceb86c83 100644 --- a/packages/tours/setup.cfg +++ b/packages/tours/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-tours url = https://github.com/galaxyproject/galaxy -version = 24.1.4.dev0 +version = 24.1.4 [options] include_package_data = True diff --git a/packages/util/HISTORY.rst b/packages/util/HISTORY.rst index aaba18ec97f2..4ec9ec4b7e59 100644 --- a/packages/util/HISTORY.rst +++ b/packages/util/HISTORY.rst @@ -3,11 +3,23 @@ History .. to_doc ------------ -24.1.4.dev0 ------------ +------------------- +24.1.4 (2024-12-11) +------------------- + + +========= +Bug fixes +========= +* Fix Archive header encoding by `@arash77 `_ in `#18583 `_ +* File source and object store instance api fixes by `@mvdbeek `_ in `#18685 `_ +============ +Enhancements +============ + +* Use smtplib send_message to support utf-8 chars in to and from by `@mvdbeek `_ in `#18805 `_ ------------------- 24.1.3 (2024-10-25) diff --git a/packages/util/setup.cfg b/packages/util/setup.cfg index 38a50c30939b..b62f4a4ddc83 100644 --- a/packages/util/setup.cfg +++ b/packages/util/setup.cfg @@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-util url = https://github.com/galaxyproject/galaxy -version = 24.1.4.dev0 +version = 24.1.4 [options] include_package_data = True diff --git a/packages/web_apps/HISTORY.rst b/packages/web_apps/HISTORY.rst index c533962cc5c0..e8682f81da8b 100644 --- a/packages/web_apps/HISTORY.rst +++ b/packages/web_apps/HISTORY.rst @@ -3,11 +3,47 @@ History .. to_doc ------------ -24.1.4.dev0 ------------ +------------------- +24.1.4 (2024-12-11) +------------------- + +========= +Bug fixes +========= +* Return generic message for password reset email by `@ahmedhamidawan `_ in `#18479 `_ +* Fix view parameter type in Job index API by `@davelopez `_ in `#18521 `_ +* Check if dataset has any data before running provider checks by `@mvdbeek `_ in `#18526 `_ +* Raise appropriate exception if ldda not found by `@mvdbeek `_ in `#18569 `_ +* Close install model session when request ends by `@mvdbeek `_ in `#18629 `_ +* Fix resume_paused_jobs if no session provided by `@mvdbeek `_ in `#18640 `_ +* Fix extract workflow from history when implicit collection has no jobs by `@mvdbeek `_ in `#18661 `_ +* Return error when following a link to a non-ready display application by `@mvdbeek `_ in `#18672 `_ +* Only load authnz routes when oidc enabled by `@mvdbeek `_ in `#18683 `_ +* File source and object store instance api fixes by `@mvdbeek `_ in `#18685 `_ +* Fix sorting users in admin by last login by `@jdavcs `_ in `#18694 `_ +* Fix resume paused jobs response handling by `@dannon `_ in `#18733 `_ +* Fix wrong extension on pick data output by `@mvdbeek `_ in `#18798 `_ +* Tighten TRS url check by `@mvdbeek `_ in `#18841 `_ +* Fix Workflow index bookmark filter by `@itisAliRH `_ in `#18842 `_ +* Extend on disk checks to running, queued and error states by `@mvdbeek `_ in `#18846 `_ +* Limit max number of items in dataproviders by `@mvdbeek `_ in `#18881 `_ +* Access tool data table filters in workflow building mode by `@mvdbeek `_ in `#18900 `_ +* Don't use ``async def`` where not appropriate by `@mvdbeek `_ in `#18944 `_ +* Fix very slow workflow editor loading by `@mvdbeek `_ in `#19068 `_ + +============ +Enhancements +============ + +* Make `default_panel_view` a `_by_host` option by `@natefoo `_ in `#18471 `_ + +============= +Other changes +============= + +* Fix check dataset check by `@mvdbeek `_ in `#18856 `_ ------------------- 24.1.3 (2024-10-25) diff --git a/packages/web_apps/setup.cfg b/packages/web_apps/setup.cfg index 18260c932b0a..f2426503b9f2 100644 --- a/packages/web_apps/setup.cfg +++ b/packages/web_apps/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-web-apps url = https://github.com/galaxyproject/galaxy -version = 24.1.4.dev0 +version = 24.1.4 [options] include_package_data = True diff --git a/packages/web_framework/HISTORY.rst b/packages/web_framework/HISTORY.rst index 63b02e282c94..e84f2ca26e71 100644 --- a/packages/web_framework/HISTORY.rst +++ b/packages/web_framework/HISTORY.rst @@ -3,11 +3,18 @@ History .. to_doc ------------ -24.1.4.dev0 ------------ +------------------- +24.1.4 (2024-12-11) +------------------- +========= +Bug fixes +========= + +* Increase API robustness to invalid requests, improve compressed data serving by `@mvdbeek `_ in `#18494 `_ +* Apply statsd arg sanitization to all pages by `@mvdbeek `_ in `#18509 `_ +* Close install model session when request ends by `@mvdbeek `_ in `#18629 `_ ------------------- 24.1.3 (2024-10-25) diff --git a/packages/web_framework/setup.cfg b/packages/web_framework/setup.cfg index 0b5e4b03783e..c6aa7f4f8f7a 100644 --- a/packages/web_framework/setup.cfg +++ b/packages/web_framework/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-web-framework url = https://github.com/galaxyproject/galaxy -version = 24.1.4.dev0 +version = 24.1.4 [options] include_package_data = True diff --git a/packages/web_stack/HISTORY.rst b/packages/web_stack/HISTORY.rst index ddd95820fa48..0fec6408b795 100644 --- a/packages/web_stack/HISTORY.rst +++ b/packages/web_stack/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -24.1.4.dev0 ------------ - +------------------- +24.1.4 (2024-12-11) +------------------- +No recorded changes since last release ------------------- 24.1.3 (2024-10-25) diff --git a/packages/web_stack/setup.cfg b/packages/web_stack/setup.cfg index dd1cac358fe0..bf13d33f7160 100644 --- a/packages/web_stack/setup.cfg +++ b/packages/web_stack/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-web-stack url = https://github.com/galaxyproject/galaxy -version = 24.1.4.dev0 +version = 24.1.4 [options] include_package_data = True From 0f83529907506678c2573b10689fa3ceceae7906 Mon Sep 17 00:00:00 2001 From: Matthias Bernt Date: Wed, 11 Dec 2024 10:47:56 +0100 Subject: [PATCH 9/9] Start work on 24.1.5.dev0 --- lib/galaxy/version.py | 2 +- packages/app/HISTORY.rst | 6 ++++++ packages/app/setup.cfg | 2 +- packages/auth/HISTORY.rst | 6 ++++++ packages/auth/setup.cfg | 2 +- packages/config/HISTORY.rst | 6 ++++++ packages/config/setup.cfg | 2 +- packages/data/HISTORY.rst | 6 ++++++ packages/data/setup.cfg | 2 +- packages/files/HISTORY.rst | 6 ++++++ packages/files/setup.cfg | 2 +- packages/job_execution/HISTORY.rst | 6 ++++++ packages/job_execution/setup.cfg | 2 +- packages/job_metrics/HISTORY.rst | 6 ++++++ packages/job_metrics/setup.cfg | 2 +- packages/navigation/HISTORY.rst | 6 ++++++ packages/navigation/setup.cfg | 2 +- packages/objectstore/HISTORY.rst | 6 ++++++ packages/objectstore/setup.cfg | 2 +- packages/schema/HISTORY.rst | 6 ++++++ packages/schema/setup.cfg | 2 +- packages/selenium/HISTORY.rst | 6 ++++++ packages/selenium/setup.cfg | 2 +- packages/test_api/HISTORY.rst | 6 ++++++ packages/test_api/setup.cfg | 2 +- packages/test_base/HISTORY.rst | 6 ++++++ packages/test_base/setup.cfg | 2 +- packages/test_driver/HISTORY.rst | 6 ++++++ packages/test_driver/setup.cfg | 2 +- packages/tool_shed/HISTORY.rst | 6 ++++++ packages/tool_shed/setup.cfg | 2 +- packages/tool_util/HISTORY.rst | 6 ++++++ packages/tool_util/setup.cfg | 2 +- packages/tours/HISTORY.rst | 6 ++++++ packages/tours/setup.cfg | 2 +- packages/util/HISTORY.rst | 6 ++++++ packages/util/setup.cfg | 2 +- packages/web_apps/HISTORY.rst | 6 ++++++ packages/web_apps/setup.cfg | 2 +- packages/web_framework/HISTORY.rst | 6 ++++++ packages/web_framework/setup.cfg | 2 +- packages/web_stack/HISTORY.rst | 6 ++++++ packages/web_stack/setup.cfg | 2 +- 43 files changed, 148 insertions(+), 22 deletions(-) diff --git a/lib/galaxy/version.py b/lib/galaxy/version.py index a5268a98f85e..92271752cf87 100644 --- a/lib/galaxy/version.py +++ b/lib/galaxy/version.py @@ -1,3 +1,3 @@ VERSION_MAJOR = "24.1" -VERSION_MINOR = "4" +VERSION_MINOR = "5.dev0" VERSION = VERSION_MAJOR + (f".{VERSION_MINOR}" if VERSION_MINOR else "") diff --git a/packages/app/HISTORY.rst b/packages/app/HISTORY.rst index ffcbc878078b..494cac6ba4ae 100644 --- a/packages/app/HISTORY.rst +++ b/packages/app/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +24.1.5.dev0 +----------- + + + ------------------- 24.1.4 (2024-12-11) ------------------- diff --git a/packages/app/setup.cfg b/packages/app/setup.cfg index d723bfe5115c..654f5f3e8705 100644 --- a/packages/app/setup.cfg +++ b/packages/app/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-app url = https://github.com/galaxyproject/galaxy -version = 24.1.4 +version = 24.1.5.dev0 [options] include_package_data = True diff --git a/packages/auth/HISTORY.rst b/packages/auth/HISTORY.rst index 47c167e10964..9fb0ed647052 100644 --- a/packages/auth/HISTORY.rst +++ b/packages/auth/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +24.1.5.dev0 +----------- + + + ------------------- 24.1.4 (2024-12-11) ------------------- diff --git a/packages/auth/setup.cfg b/packages/auth/setup.cfg index da6a4ad77cf3..1209b6b62ddb 100644 --- a/packages/auth/setup.cfg +++ b/packages/auth/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-auth url = https://github.com/galaxyproject/galaxy -version = 24.1.4 +version = 24.1.5.dev0 [options] include_package_data = True diff --git a/packages/config/HISTORY.rst b/packages/config/HISTORY.rst index 41fd061d0cb4..794566551555 100644 --- a/packages/config/HISTORY.rst +++ b/packages/config/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +24.1.5.dev0 +----------- + + + ------------------- 24.1.4 (2024-12-11) ------------------- diff --git a/packages/config/setup.cfg b/packages/config/setup.cfg index e9751e6b5f1d..c61dc18d03b4 100644 --- a/packages/config/setup.cfg +++ b/packages/config/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-config url = https://github.com/galaxyproject/galaxy -version = 24.1.4 +version = 24.1.5.dev0 [options] include_package_data = True diff --git a/packages/data/HISTORY.rst b/packages/data/HISTORY.rst index c690e8b89ea3..9b30c0f7e810 100644 --- a/packages/data/HISTORY.rst +++ b/packages/data/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +24.1.5.dev0 +----------- + + + ------------------- 24.1.4 (2024-12-11) ------------------- diff --git a/packages/data/setup.cfg b/packages/data/setup.cfg index 7307f46e392b..3f4347a183e3 100644 --- a/packages/data/setup.cfg +++ b/packages/data/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-data url = https://github.com/galaxyproject/galaxy -version = 24.1.4 +version = 24.1.5.dev0 [options] include_package_data = True diff --git a/packages/files/HISTORY.rst b/packages/files/HISTORY.rst index ac81f81f3c34..042827e213a3 100644 --- a/packages/files/HISTORY.rst +++ b/packages/files/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +24.1.5.dev0 +----------- + + + ------------------- 24.1.4 (2024-12-11) ------------------- diff --git a/packages/files/setup.cfg b/packages/files/setup.cfg index d2b7d3e1ce8a..785e2c1aa3c0 100644 --- a/packages/files/setup.cfg +++ b/packages/files/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-files url = https://github.com/galaxyproject/galaxy -version = 24.1.4 +version = 24.1.5.dev0 [options] include_package_data = True diff --git a/packages/job_execution/HISTORY.rst b/packages/job_execution/HISTORY.rst index 51f89887e58a..a79b62f29846 100644 --- a/packages/job_execution/HISTORY.rst +++ b/packages/job_execution/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +24.1.5.dev0 +----------- + + + ------------------- 24.1.4 (2024-12-11) ------------------- diff --git a/packages/job_execution/setup.cfg b/packages/job_execution/setup.cfg index d2b8d0fa18a5..66adf467fe95 100644 --- a/packages/job_execution/setup.cfg +++ b/packages/job_execution/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-job-execution url = https://github.com/galaxyproject/galaxy -version = 24.1.4 +version = 24.1.5.dev0 [options] include_package_data = True diff --git a/packages/job_metrics/HISTORY.rst b/packages/job_metrics/HISTORY.rst index 8c2c8fbd3b32..f4379561b4c4 100644 --- a/packages/job_metrics/HISTORY.rst +++ b/packages/job_metrics/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +24.1.5.dev0 +----------- + + + ------------------- 24.1.4 (2024-12-11) ------------------- diff --git a/packages/job_metrics/setup.cfg b/packages/job_metrics/setup.cfg index e051ba96b437..fc1732183c94 100644 --- a/packages/job_metrics/setup.cfg +++ b/packages/job_metrics/setup.cfg @@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-job-metrics url = https://github.com/galaxyproject/galaxy -version = 24.1.4 +version = 24.1.5.dev0 [options] include_package_data = True diff --git a/packages/navigation/HISTORY.rst b/packages/navigation/HISTORY.rst index e977aa60a401..839b05b058a6 100644 --- a/packages/navigation/HISTORY.rst +++ b/packages/navigation/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +24.1.5.dev0 +----------- + + + ------------------- 24.1.4 (2024-12-11) ------------------- diff --git a/packages/navigation/setup.cfg b/packages/navigation/setup.cfg index ce3d7731334a..18d95cc560fb 100644 --- a/packages/navigation/setup.cfg +++ b/packages/navigation/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-navigation url = https://github.com/galaxyproject/galaxy -version = 24.1.4 +version = 24.1.5.dev0 [options] include_package_data = True diff --git a/packages/objectstore/HISTORY.rst b/packages/objectstore/HISTORY.rst index d7eb0602e49d..90178462e508 100644 --- a/packages/objectstore/HISTORY.rst +++ b/packages/objectstore/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +24.1.5.dev0 +----------- + + + ------------------- 24.1.4 (2024-12-11) ------------------- diff --git a/packages/objectstore/setup.cfg b/packages/objectstore/setup.cfg index 5789981489a9..bea59b11eb2a 100644 --- a/packages/objectstore/setup.cfg +++ b/packages/objectstore/setup.cfg @@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-objectstore url = https://github.com/galaxyproject/galaxy -version = 24.1.4 +version = 24.1.5.dev0 [options] include_package_data = True diff --git a/packages/schema/HISTORY.rst b/packages/schema/HISTORY.rst index d465442b7ad3..2d4c31dbc110 100644 --- a/packages/schema/HISTORY.rst +++ b/packages/schema/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +24.1.5.dev0 +----------- + + + ------------------- 24.1.4 (2024-12-11) ------------------- diff --git a/packages/schema/setup.cfg b/packages/schema/setup.cfg index f43a50441388..a69002444050 100644 --- a/packages/schema/setup.cfg +++ b/packages/schema/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-schema url = https://github.com/galaxyproject/galaxy -version = 24.1.4 +version = 24.1.5.dev0 [options] include_package_data = True diff --git a/packages/selenium/HISTORY.rst b/packages/selenium/HISTORY.rst index 09beb5764b64..f846f701261c 100644 --- a/packages/selenium/HISTORY.rst +++ b/packages/selenium/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +24.1.5.dev0 +----------- + + + ------------------- 24.1.4 (2024-12-11) ------------------- diff --git a/packages/selenium/setup.cfg b/packages/selenium/setup.cfg index 2e40c2ea81f9..6f912e0e7a5d 100644 --- a/packages/selenium/setup.cfg +++ b/packages/selenium/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-selenium url = https://github.com/galaxyproject/galaxy -version = 24.1.4 +version = 24.1.5.dev0 [options] include_package_data = True diff --git a/packages/test_api/HISTORY.rst b/packages/test_api/HISTORY.rst index e9fbd18b6f70..b6e206235984 100644 --- a/packages/test_api/HISTORY.rst +++ b/packages/test_api/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +24.1.5.dev0 +----------- + + + ------------------- 24.1.4 (2024-12-11) ------------------- diff --git a/packages/test_api/setup.cfg b/packages/test_api/setup.cfg index 24648c862353..5892eab85cd2 100644 --- a/packages/test_api/setup.cfg +++ b/packages/test_api/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-test-api url = https://github.com/galaxyproject/galaxy -version = 24.1.4 +version = 24.1.5.dev0 [options] include_package_data = True diff --git a/packages/test_base/HISTORY.rst b/packages/test_base/HISTORY.rst index c148366cc906..6064d6bec240 100644 --- a/packages/test_base/HISTORY.rst +++ b/packages/test_base/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +24.1.5.dev0 +----------- + + + ------------------- 24.1.4 (2024-12-11) ------------------- diff --git a/packages/test_base/setup.cfg b/packages/test_base/setup.cfg index 3a33f6b61a2e..5deb0ce0f0ec 100644 --- a/packages/test_base/setup.cfg +++ b/packages/test_base/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-test-base url = https://github.com/galaxyproject/galaxy -version = 24.1.4 +version = 24.1.5.dev0 [options] include_package_data = True diff --git a/packages/test_driver/HISTORY.rst b/packages/test_driver/HISTORY.rst index d3a7928618ff..b9bf7582ff23 100644 --- a/packages/test_driver/HISTORY.rst +++ b/packages/test_driver/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +24.1.5.dev0 +----------- + + + ------------------- 24.1.4 (2024-12-11) ------------------- diff --git a/packages/test_driver/setup.cfg b/packages/test_driver/setup.cfg index b0d583101fb4..a430779649bc 100644 --- a/packages/test_driver/setup.cfg +++ b/packages/test_driver/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-test-driver url = https://github.com/galaxyproject/galaxy -version = 24.1.4 +version = 24.1.5.dev0 [options] include_package_data = True diff --git a/packages/tool_shed/HISTORY.rst b/packages/tool_shed/HISTORY.rst index 9316dc2b7b79..20e3b6e57b5f 100644 --- a/packages/tool_shed/HISTORY.rst +++ b/packages/tool_shed/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +24.1.5.dev0 +----------- + + + ------------------- 24.1.4 (2024-12-11) ------------------- diff --git a/packages/tool_shed/setup.cfg b/packages/tool_shed/setup.cfg index 7566e32446ff..6658c1495c0f 100644 --- a/packages/tool_shed/setup.cfg +++ b/packages/tool_shed/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-tool-shed url = https://github.com/galaxyproject/galaxy -version = 24.1.4 +version = 24.1.5.dev0 [options] include_package_data = True diff --git a/packages/tool_util/HISTORY.rst b/packages/tool_util/HISTORY.rst index 5dda63d564e5..5fc559181c51 100644 --- a/packages/tool_util/HISTORY.rst +++ b/packages/tool_util/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +24.1.5.dev0 +----------- + + + ------------------- 24.1.4 (2024-12-11) ------------------- diff --git a/packages/tool_util/setup.cfg b/packages/tool_util/setup.cfg index d530d408c93e..2b41a247bd00 100644 --- a/packages/tool_util/setup.cfg +++ b/packages/tool_util/setup.cfg @@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-tool-util url = https://github.com/galaxyproject/galaxy -version = 24.1.4 +version = 24.1.5.dev0 [options] include_package_data = True diff --git a/packages/tours/HISTORY.rst b/packages/tours/HISTORY.rst index 30cbb115430c..1ecc3bd28305 100644 --- a/packages/tours/HISTORY.rst +++ b/packages/tours/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +24.1.5.dev0 +----------- + + + ------------------- 24.1.4 (2024-12-11) ------------------- diff --git a/packages/tours/setup.cfg b/packages/tours/setup.cfg index f765ceb86c83..2e4571594288 100644 --- a/packages/tours/setup.cfg +++ b/packages/tours/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-tours url = https://github.com/galaxyproject/galaxy -version = 24.1.4 +version = 24.1.5.dev0 [options] include_package_data = True diff --git a/packages/util/HISTORY.rst b/packages/util/HISTORY.rst index 4ec9ec4b7e59..9540d7531afa 100644 --- a/packages/util/HISTORY.rst +++ b/packages/util/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +24.1.5.dev0 +----------- + + + ------------------- 24.1.4 (2024-12-11) ------------------- diff --git a/packages/util/setup.cfg b/packages/util/setup.cfg index b62f4a4ddc83..717f4241cd69 100644 --- a/packages/util/setup.cfg +++ b/packages/util/setup.cfg @@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-util url = https://github.com/galaxyproject/galaxy -version = 24.1.4 +version = 24.1.5.dev0 [options] include_package_data = True diff --git a/packages/web_apps/HISTORY.rst b/packages/web_apps/HISTORY.rst index e8682f81da8b..e2ddec1c16d3 100644 --- a/packages/web_apps/HISTORY.rst +++ b/packages/web_apps/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +24.1.5.dev0 +----------- + + + ------------------- 24.1.4 (2024-12-11) ------------------- diff --git a/packages/web_apps/setup.cfg b/packages/web_apps/setup.cfg index f2426503b9f2..eb11207d2bf4 100644 --- a/packages/web_apps/setup.cfg +++ b/packages/web_apps/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-web-apps url = https://github.com/galaxyproject/galaxy -version = 24.1.4 +version = 24.1.5.dev0 [options] include_package_data = True diff --git a/packages/web_framework/HISTORY.rst b/packages/web_framework/HISTORY.rst index e84f2ca26e71..7a7b6441cff7 100644 --- a/packages/web_framework/HISTORY.rst +++ b/packages/web_framework/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +24.1.5.dev0 +----------- + + + ------------------- 24.1.4 (2024-12-11) ------------------- diff --git a/packages/web_framework/setup.cfg b/packages/web_framework/setup.cfg index c6aa7f4f8f7a..625fb24ad6c2 100644 --- a/packages/web_framework/setup.cfg +++ b/packages/web_framework/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-web-framework url = https://github.com/galaxyproject/galaxy -version = 24.1.4 +version = 24.1.5.dev0 [options] include_package_data = True diff --git a/packages/web_stack/HISTORY.rst b/packages/web_stack/HISTORY.rst index 0fec6408b795..736b8189c7ae 100644 --- a/packages/web_stack/HISTORY.rst +++ b/packages/web_stack/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +24.1.5.dev0 +----------- + + + ------------------- 24.1.4 (2024-12-11) ------------------- diff --git a/packages/web_stack/setup.cfg b/packages/web_stack/setup.cfg index bf13d33f7160..813376c413cb 100644 --- a/packages/web_stack/setup.cfg +++ b/packages/web_stack/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-web-stack url = https://github.com/galaxyproject/galaxy -version = 24.1.4 +version = 24.1.5.dev0 [options] include_package_data = True