From 331d4954e16d3f9dc375ae55cd0845efe3f73349 Mon Sep 17 00:00:00 2001 From: mvdbeek Date: Thu, 27 Jun 2024 15:40:01 +0200 Subject: [PATCH 1/5] Decrease log level for requesting invalid items --- lib/galaxy/managers/base.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/lib/galaxy/managers/base.py b/lib/galaxy/managers/base.py index be487b4da675..6629e6911267 100644 --- a/lib/galaxy/managers/base.py +++ b/lib/galaxy/managers/base.py @@ -178,7 +178,7 @@ def get_object(trans, id, class_name, check_ownership=False, check_accessible=Fa item = trans.sa_session.query(item_class).get(decoded_id) assert item is not None except Exception: - log.exception(f"Invalid {class_name} id ( {id} ) specified.") + log.warning(f"Invalid {class_name} id ( {id} ) specified.") raise exceptions.MessageException(f"Invalid {class_name} id ( {id} ) specified", type="error") if check_ownership or check_accessible: From 7d57020e7dbf1c90e92a7353b48413f4f167623d Mon Sep 17 00:00:00 2001 From: mvdbeek Date: Thu, 27 Jun 2024 15:40:24 +0200 Subject: [PATCH 2/5] Raise serializable exceptions when uploading broken workflows --- lib/galaxy/managers/workflows.py | 8 ++++++-- 1 file changed, 6 insertions(+), 2 deletions(-) diff --git a/lib/galaxy/managers/workflows.py b/lib/galaxy/managers/workflows.py index 7f57f698e5f2..31bf22ac6d20 100644 --- a/lib/galaxy/managers/workflows.py +++ b/lib/galaxy/managers/workflows.py @@ -1856,10 +1856,14 @@ def __load_subworkflow_from_step_dict( embedded_subworkflow = step_dict.get("subworkflow", None) subworkflow_id = step_dict.get("content_id", None) if embedded_subworkflow and subworkflow_id: - raise Exception("Subworkflow step defines both subworkflow and content_id, only one may be specified.") + raise exceptions.RequestParameterInvalidException( + "Subworkflow step defines both subworkflow and content_id, only one may be specified." + ) if not embedded_subworkflow and not subworkflow_id: - raise Exception("Subworkflow step must define either subworkflow or content_id.") + raise exceptions.RequestParameterInvalidException( + "Subworkflow step must define either subworkflow or content_id." + ) if embedded_subworkflow: assert not dry_run From 983048805f1928ca83444b5ec95e2a797380eb26 Mon Sep 17 00:00:00 2001 From: mvdbeek Date: Thu, 27 Jun 2024 15:40:44 +0200 Subject: [PATCH 3/5] Raise serializable exception when loading invalid version for a workflow Fixes https://github.com/galaxyproject/galaxy/issues/18438 --- lib/galaxy/model/__init__.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/lib/galaxy/model/__init__.py b/lib/galaxy/model/__init__.py index bdb543e146bb..e4bd56ace205 100644 --- a/lib/galaxy/model/__init__.py +++ b/lib/galaxy/model/__init__.py @@ -7666,7 +7666,7 @@ def get_internal_version(self, version): if version is None: return self.latest_workflow if len(self.workflows) <= version: - raise Exception("Version does not exist") + raise galaxy.exceptions.RequestParameterInvalidException("Version does not exist") return list(reversed(self.workflows))[version] def version_of(self, workflow): From d94748193fbb913347b449049f26d1f8029bde29 Mon Sep 17 00:00:00 2001 From: Matthias Bernt Date: Fri, 28 Jun 2024 11:08:00 +0200 Subject: [PATCH 4/5] Create version 24.0.3 --- lib/galaxy/version.py | 2 +- packages/app/HISTORY.rst | 50 ++++++++++++++++++++++++++++-- packages/app/setup.cfg | 2 +- packages/auth/HISTORY.rst | 8 ++--- packages/auth/setup.cfg | 2 +- packages/config/HISTORY.rst | 18 +++++++++-- packages/config/setup.cfg | 2 +- packages/data/HISTORY.rst | 25 +++++++++++++-- packages/data/setup.cfg | 2 +- packages/files/HISTORY.rst | 15 +++++++-- packages/files/setup.cfg | 2 +- packages/job_execution/HISTORY.rst | 15 +++++++-- packages/job_execution/setup.cfg | 2 +- packages/job_metrics/HISTORY.rst | 8 ++--- packages/job_metrics/setup.cfg | 2 +- packages/navigation/HISTORY.rst | 8 ++--- packages/navigation/setup.cfg | 2 +- packages/objectstore/HISTORY.rst | 13 ++++++-- packages/objectstore/setup.cfg | 2 +- packages/schema/HISTORY.rst | 16 ++++++++-- packages/schema/setup.cfg | 2 +- packages/selenium/HISTORY.rst | 8 ++--- packages/selenium/setup.cfg | 2 +- packages/test_api/HISTORY.rst | 14 +++++++-- packages/test_api/setup.cfg | 2 +- packages/test_base/HISTORY.rst | 11 +++++-- packages/test_base/setup.cfg | 2 +- packages/test_driver/HISTORY.rst | 12 +++++-- packages/test_driver/setup.cfg | 2 +- packages/tool_shed/HISTORY.rst | 13 ++++++-- packages/tool_shed/setup.cfg | 2 +- packages/tool_util/HISTORY.rst | 14 +++++++-- packages/tool_util/setup.cfg | 2 +- packages/tours/HISTORY.rst | 8 ++--- packages/tours/setup.cfg | 2 +- packages/util/HISTORY.rst | 11 +++++-- packages/util/setup.cfg | 2 +- packages/web_apps/HISTORY.rst | 33 ++++++++++++++++++-- packages/web_apps/setup.cfg | 2 +- packages/web_framework/HISTORY.rst | 12 +++++-- packages/web_framework/setup.cfg | 2 +- packages/web_stack/HISTORY.rst | 8 ++--- packages/web_stack/setup.cfg | 2 +- 43 files changed, 273 insertions(+), 91 deletions(-) diff --git a/lib/galaxy/version.py b/lib/galaxy/version.py index faf06a749db9..2bd35d82d11e 100644 --- a/lib/galaxy/version.py +++ b/lib/galaxy/version.py @@ -1,3 +1,3 @@ VERSION_MAJOR = "24.0" -VERSION_MINOR = "3.dev0" +VERSION_MINOR = "3" VERSION = VERSION_MAJOR + (f".{VERSION_MINOR}" if VERSION_MINOR else "") diff --git a/packages/app/HISTORY.rst b/packages/app/HISTORY.rst index 8a7748555e2c..910d4d34ccb5 100644 --- a/packages/app/HISTORY.rst +++ b/packages/app/HISTORY.rst @@ -3,11 +3,55 @@ History .. to_doc ------------ -24.0.3.dev0 ------------ +------------------- +24.0.3 (2024-06-28) +------------------- + +========= +Bug fixes +========= + +* Raise exception if collection elements missing during download by `@jdavcs `_ in `#18094 `_ +* Allow purge query param, deprecate purge body param by `@mvdbeek `_ in `#18105 `_ +* Backport OIDC schema fix by `@mvdbeek `_ in `#18111 `_ +* Don't log exception if cancelled slurm job doesn't have stderr file by `@mvdbeek `_ in `#18121 `_ +* Downgrade missing output file in working directory to warning for failed jobs by `@mvdbeek `_ in `#18123 `_ +* Fix data default values not getting added to history by `@mvdbeek `_ in `#18132 `_ +* Drop redundant error message by `@mvdbeek `_ in `#18156 `_ +* Emit warning when user-cancelled job already complete by `@mvdbeek `_ in `#18178 `_ +* Avoid object store path lookup when constructing JobState object by `@mvdbeek `_ in `#18190 `_ +* Add string cast for dbkey / genome_build by `@mvdbeek `_ in `#18207 `_ +* Check dataset state when attempting to acces dataset contents by `@mvdbeek `_ in `#18214 `_ +* Don't set dataset peek for errored jobs by `@mvdbeek `_ in `#18231 `_ +* Raise exception when extracting dataset from collection without datasets by `@mvdbeek `_ in `#18249 `_ +* Skip tests if toolshed, dx.doi not responding by `@mvdbeek `_ in `#18250 `_ +* Don't attempt to download purged datasets by `@mvdbeek `_ in `#18278 `_ +* Check various preconditions in FeatureLocationIndexDataProvider by `@davelopez `_ in `#18283 `_ +* Don't serialize display application links for deleted datasets by `@mvdbeek `_ in `#18307 `_ +* Downgrade doi fetch error to debug by `@mvdbeek `_ in `#18330 `_ +* Fix authentication error for anonymous users querying jobs by `@davelopez `_ in `#18333 `_ +* Fix seek in slurm memory check by `@mvdbeek `_ in `#18338 `_ +* Do not copy purged outputs to object store by `@mvdbeek `_ in `#18342 `_ +* Kill pulsar job if job stopped on galaxy side by `@mvdbeek `_ in `#18348 `_ +* Allow DCE as outer input to to_cwl by `@mvdbeek `_ in `#18349 `_ +* Fix anonymous user job retrieval logic by `@davelopez `_ in `#18358 `_ +* Fix update group API payload model by `@davelopez `_ in `#18374 `_ +* Fix user's private role can be missing by `@davelopez `_ in `#18381 `_ +* Fix null inputs in database operation tools by `@mvdbeek `_ in `#18385 `_ +* Assign default ``data`` extension on discovered collection output by `@mvdbeek `_ in `#18389 `_ +* Fix ``get_accessible_job`` if called without session by `@mvdbeek `_ in `#18400 `_ +* Fix invocation step_job_summary for new collections by `@mvdbeek `_ in `#18402 `_ +* Really allow in-range validator for txt by `@bernt-matthias `_ in `#18411 `_ +* Fix collection map over status for dragged collections by `@mvdbeek `_ in `#18416 `_ +* Serialize purged flag for datasets in collections by `@davelopez `_ in `#18420 `_ + +============= +Other changes +============= +* Minor linting cleanup by `@mvdbeek `_ in `#18421 `_ +* Replace busybox:ubuntu-14.04 image with busybox:1.36.1-glibc by `@mvdbeek `_ in `#18428 `_ ------------------- 24.0.2 (2024-05-07) diff --git a/packages/app/setup.cfg b/packages/app/setup.cfg index 510b81a92b37..4f57e2a36bcb 100644 --- a/packages/app/setup.cfg +++ b/packages/app/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-app url = https://github.com/galaxyproject/galaxy -version = 24.0.3.dev0 +version = 24.0.3 [options] include_package_data = True diff --git a/packages/auth/HISTORY.rst b/packages/auth/HISTORY.rst index cc3781945d0e..e502b35f705a 100644 --- a/packages/auth/HISTORY.rst +++ b/packages/auth/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -24.0.3.dev0 ------------ - +------------------- +24.0.3 (2024-06-28) +------------------- +No recorded changes since last release ------------------- 24.0.2 (2024-05-07) diff --git a/packages/auth/setup.cfg b/packages/auth/setup.cfg index 9bd7c1a0ff44..b1cdf831d6af 100644 --- a/packages/auth/setup.cfg +++ b/packages/auth/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-auth url = https://github.com/galaxyproject/galaxy -version = 24.0.3.dev0 +version = 24.0.3 [options] include_package_data = True diff --git a/packages/config/HISTORY.rst b/packages/config/HISTORY.rst index 8a835779b701..827aee3837e0 100644 --- a/packages/config/HISTORY.rst +++ b/packages/config/HISTORY.rst @@ -3,11 +3,23 @@ History .. to_doc ------------ -24.0.3.dev0 ------------ +------------------- +24.0.3 (2024-06-28) +------------------- + +========= +Bug fixes +========= + +* Backport OIDC schema fix by `@mvdbeek `_ in `#18111 `_ +* Minor fix to enable external hgweb process by `@mvdbeek `_ in `#18256 `_ + +============= +Other changes +============= +* Replace busybox:ubuntu-14.04 image with busybox:1.36.1-glibc by `@mvdbeek `_ in `#18428 `_ ------------------- 24.0.2 (2024-05-07) diff --git a/packages/config/setup.cfg b/packages/config/setup.cfg index 8613e876fd3b..21ecab811ac0 100644 --- a/packages/config/setup.cfg +++ b/packages/config/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-config url = https://github.com/galaxyproject/galaxy -version = 24.0.3.dev0 +version = 24.0.3 [options] include_package_data = True diff --git a/packages/data/HISTORY.rst b/packages/data/HISTORY.rst index 8f62145437d9..c3c4cf86a1bc 100644 --- a/packages/data/HISTORY.rst +++ b/packages/data/HISTORY.rst @@ -3,11 +3,30 @@ History .. to_doc ------------ -24.0.3.dev0 ------------ +------------------- +24.0.3 (2024-06-28) +------------------- + +========= +Bug fixes +========= + +* Downgrade count lines error to warning by `@mvdbeek `_ in `#18175 `_ +* Don't set dataset peek for errored jobs by `@mvdbeek `_ in `#18231 `_ +* Transparently open compressed files in DatasetDataProvider by `@mvdbeek `_ in `#18248 `_ +* Raise exception when extracting dataset from collection without datasets by `@mvdbeek `_ in `#18249 `_ +* Set page importable to false when serializing by `@mvdbeek `_ in `#18263 `_ +* Fix first_dataset_element type hint by `@mvdbeek `_ in `#18284 `_ +* Do not copy purged outputs to object store by `@mvdbeek `_ in `#18342 `_ +* Fix user's private role can be missing by `@davelopez `_ in `#18381 `_ +* Assign default ``data`` extension on discovered collection output by `@mvdbeek `_ in `#18389 `_ + +============= +Other changes +============= +* Replace busybox:ubuntu-14.04 image with busybox:1.36.1-glibc by `@mvdbeek `_ in `#18428 `_ ------------------- 24.0.2 (2024-05-07) diff --git a/packages/data/setup.cfg b/packages/data/setup.cfg index 11ee5fb60a46..6e76b0e7ce44 100644 --- a/packages/data/setup.cfg +++ b/packages/data/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-data url = https://github.com/galaxyproject/galaxy -version = 24.0.3.dev0 +version = 24.0.3 [options] include_package_data = True diff --git a/packages/files/HISTORY.rst b/packages/files/HISTORY.rst index 014e0e7e2ef6..f5414a13d22e 100644 --- a/packages/files/HISTORY.rst +++ b/packages/files/HISTORY.rst @@ -3,11 +3,20 @@ History .. to_doc ------------ -24.0.3.dev0 ------------ +------------------- +24.0.3 (2024-06-28) +------------------- + +========= +Bug fixes +========= +* Fix listing possibly untitled records in Invenio Plugin by `@davelopez `_ in `#18130 `_ +* Raise ``RequestParameterInvalidException`` when url is invalid by `@mvdbeek `_ in `#18155 `_ +* Fix error message when accessing restricted Zenodo records by `@davelopez `_ in `#18169 `_ +* Raise ``RequestParameterInvalidException`` if url can't be verified by `@mvdbeek `_ in `#18230 `_ +* Fix Invenio credentials handling by `@davelopez `_ in `#18255 `_ ------------------- 24.0.2 (2024-05-07) diff --git a/packages/files/setup.cfg b/packages/files/setup.cfg index d48b7a30f03b..144c7e3b0e48 100644 --- a/packages/files/setup.cfg +++ b/packages/files/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-files url = https://github.com/galaxyproject/galaxy -version = 24.0.3.dev0 +version = 24.0.3 [options] include_package_data = True diff --git a/packages/job_execution/HISTORY.rst b/packages/job_execution/HISTORY.rst index ae1c4d865a27..416c66fcbcfa 100644 --- a/packages/job_execution/HISTORY.rst +++ b/packages/job_execution/HISTORY.rst @@ -3,11 +3,20 @@ History .. to_doc ------------ -24.0.3.dev0 ------------ +------------------- +24.0.3 (2024-06-28) +------------------- + +========= +Bug fixes +========= +* Include traceback when logging email PJA exception by `@mvdbeek `_ in `#18122 `_ +* Don't commit in ``DeleteIntermediatesAction`` by `@mvdbeek `_ in `#18131 `_ +* Don't fail metadata if we only have an extra output files dir by `@mvdbeek `_ in `#18179 `_ +* Don't set dataset peek for errored jobs by `@mvdbeek `_ in `#18231 `_ +* Do not copy purged outputs to object store by `@mvdbeek `_ in `#18342 `_ ------------------- 24.0.2 (2024-05-07) diff --git a/packages/job_execution/setup.cfg b/packages/job_execution/setup.cfg index 0dd13ee71a8c..06428a3e4211 100644 --- a/packages/job_execution/setup.cfg +++ b/packages/job_execution/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-job-execution url = https://github.com/galaxyproject/galaxy -version = 24.0.3.dev0 +version = 24.0.3 [options] include_package_data = True diff --git a/packages/job_metrics/HISTORY.rst b/packages/job_metrics/HISTORY.rst index 199be7b3f263..f264ad382ab8 100644 --- a/packages/job_metrics/HISTORY.rst +++ b/packages/job_metrics/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -24.0.3.dev0 ------------ - +------------------- +24.0.3 (2024-06-28) +------------------- +No recorded changes since last release ------------------- 24.0.2 (2024-05-07) diff --git a/packages/job_metrics/setup.cfg b/packages/job_metrics/setup.cfg index 4f6a9bb1bd9a..39238491f842 100644 --- a/packages/job_metrics/setup.cfg +++ b/packages/job_metrics/setup.cfg @@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-job-metrics url = https://github.com/galaxyproject/galaxy -version = 24.0.3.dev0 +version = 24.0.3 [options] include_package_data = True diff --git a/packages/navigation/HISTORY.rst b/packages/navigation/HISTORY.rst index 87be7380b402..4416766c90c5 100644 --- a/packages/navigation/HISTORY.rst +++ b/packages/navigation/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -24.0.3.dev0 ------------ - +------------------- +24.0.3 (2024-06-28) +------------------- +No recorded changes since last release ------------------- 24.0.2 (2024-05-07) diff --git a/packages/navigation/setup.cfg b/packages/navigation/setup.cfg index a7635929adcd..76b9b55bcfd9 100644 --- a/packages/navigation/setup.cfg +++ b/packages/navigation/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-navigation url = https://github.com/galaxyproject/galaxy -version = 24.0.3.dev0 +version = 24.0.3 [options] include_package_data = True diff --git a/packages/objectstore/HISTORY.rst b/packages/objectstore/HISTORY.rst index 0c829bc41e46..dd59c02c8d2d 100644 --- a/packages/objectstore/HISTORY.rst +++ b/packages/objectstore/HISTORY.rst @@ -3,11 +3,18 @@ History .. to_doc ------------ -24.0.3.dev0 ------------ +------------------- +24.0.3 (2024-06-28) +------------------- + +========= +Bug fixes +========= +* Include stack when reporting delete error by `@mvdbeek `_ in `#18208 `_ +* Only log error if deleting directory really failed by `@mvdbeek `_ in `#18236 `_ +* Do not copy purged outputs to object store by `@mvdbeek `_ in `#18342 `_ ------------------- 24.0.2 (2024-05-07) diff --git a/packages/objectstore/setup.cfg b/packages/objectstore/setup.cfg index 920db3c6912a..2d38646fa096 100644 --- a/packages/objectstore/setup.cfg +++ b/packages/objectstore/setup.cfg @@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-objectstore url = https://github.com/galaxyproject/galaxy -version = 24.0.3.dev0 +version = 24.0.3 [options] include_package_data = True diff --git a/packages/schema/HISTORY.rst b/packages/schema/HISTORY.rst index 7269d54ff69e..eae72f221ec3 100644 --- a/packages/schema/HISTORY.rst +++ b/packages/schema/HISTORY.rst @@ -3,11 +3,21 @@ History .. to_doc ------------ -24.0.3.dev0 ------------ +------------------- +24.0.3 (2024-06-28) +------------------- + +========= +Bug fixes +========= +* do not expand datasets that are known to be inaccessible by `@martenson `_ in `#17818 `_ +* Allow purge query param, deprecate purge body param by `@mvdbeek `_ in `#18105 `_ +* Fix deprecated `deprecated` argument by `@mvdbeek `_ in `#18119 `_ +* Fix users API serialization when listing users by `@davelopez `_ in `#18329 `_ +* Fix update group API payload model by `@davelopez `_ in `#18374 `_ +* Serialize purged flag for datasets in collections by `@davelopez `_ in `#18420 `_ ------------------- 24.0.2 (2024-05-07) diff --git a/packages/schema/setup.cfg b/packages/schema/setup.cfg index 1b39e67037c2..5c95743f9d2b 100644 --- a/packages/schema/setup.cfg +++ b/packages/schema/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-schema url = https://github.com/galaxyproject/galaxy -version = 24.0.3.dev0 +version = 24.0.3 [options] include_package_data = True diff --git a/packages/selenium/HISTORY.rst b/packages/selenium/HISTORY.rst index 2bf8eefcecc2..5c367a9c0082 100644 --- a/packages/selenium/HISTORY.rst +++ b/packages/selenium/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -24.0.3.dev0 ------------ - +------------------- +24.0.3 (2024-06-28) +------------------- +No recorded changes since last release ------------------- 24.0.2 (2024-05-07) diff --git a/packages/selenium/setup.cfg b/packages/selenium/setup.cfg index ade7f36fa591..8a1e790dee47 100644 --- a/packages/selenium/setup.cfg +++ b/packages/selenium/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-selenium url = https://github.com/galaxyproject/galaxy -version = 24.0.3.dev0 +version = 24.0.3 [options] include_package_data = True diff --git a/packages/test_api/HISTORY.rst b/packages/test_api/HISTORY.rst index a2091e38fa49..3e22cd243564 100644 --- a/packages/test_api/HISTORY.rst +++ b/packages/test_api/HISTORY.rst @@ -3,11 +3,19 @@ History .. to_doc ------------ -24.0.3.dev0 ------------ +------------------- +24.0.3 (2024-06-28) +------------------- + +========= +Bug fixes +========= +* Allow purge query param, deprecate purge body param by `@mvdbeek `_ in `#18105 `_ +* Prevent anonymous and inactive users from running workflows by `@ahmedhamidawan `_ in `#18192 `_ +* Check dataset state when attempting to acces dataset contents by `@mvdbeek `_ in `#18214 `_ +* Fix update group API payload model by `@davelopez `_ in `#18374 `_ ------------------- 24.0.2 (2024-05-07) diff --git a/packages/test_api/setup.cfg b/packages/test_api/setup.cfg index d647d647ce11..0ec101d2d806 100644 --- a/packages/test_api/setup.cfg +++ b/packages/test_api/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-test-api url = https://github.com/galaxyproject/galaxy -version = 24.0.3.dev0 +version = 24.0.3 [options] include_package_data = True diff --git a/packages/test_base/HISTORY.rst b/packages/test_base/HISTORY.rst index 156997b8c6aa..adf626c7f01c 100644 --- a/packages/test_base/HISTORY.rst +++ b/packages/test_base/HISTORY.rst @@ -3,11 +3,16 @@ History .. to_doc ------------ -24.0.3.dev0 ------------ +------------------- +24.0.3 (2024-06-28) +------------------- + +========= +Bug fixes +========= +* Fix submitted value in workflow run form if data is constrained by tag filter by `@mvdbeek `_ in `#18193 `_ ------------------- 24.0.2 (2024-05-07) diff --git a/packages/test_base/setup.cfg b/packages/test_base/setup.cfg index 974ed3562fd9..967ac56ea519 100644 --- a/packages/test_base/setup.cfg +++ b/packages/test_base/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-test-base url = https://github.com/galaxyproject/galaxy -version = 24.0.3.dev0 +version = 24.0.3 [options] include_package_data = True diff --git a/packages/test_driver/HISTORY.rst b/packages/test_driver/HISTORY.rst index 5212554681e2..c2133e4a7cdf 100644 --- a/packages/test_driver/HISTORY.rst +++ b/packages/test_driver/HISTORY.rst @@ -3,11 +3,17 @@ History .. to_doc ------------ -24.0.3.dev0 ------------ +------------------- +24.0.3 (2024-06-28) +------------------- + +========= +Bug fixes +========= +* Skip tests if toolshed, dx.doi not responding by `@mvdbeek `_ in `#18250 `_ +* Move tool shed specific driver function to tool_shed.test by `@mvdbeek `_ in `#18296 `_ ------------------- 24.0.2 (2024-05-07) diff --git a/packages/test_driver/setup.cfg b/packages/test_driver/setup.cfg index d1f2ae4ce8a6..77b60e008af6 100644 --- a/packages/test_driver/setup.cfg +++ b/packages/test_driver/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-test-driver url = https://github.com/galaxyproject/galaxy -version = 24.0.3.dev0 +version = 24.0.3 [options] include_package_data = True diff --git a/packages/tool_shed/HISTORY.rst b/packages/tool_shed/HISTORY.rst index b8e0993840a6..64bf65d3282a 100644 --- a/packages/tool_shed/HISTORY.rst +++ b/packages/tool_shed/HISTORY.rst @@ -3,11 +3,18 @@ History .. to_doc ------------ -24.0.3.dev0 ------------ +------------------- +24.0.3 (2024-06-28) +------------------- + +========= +Bug fixes +========= +* Add ``hgweb_repo_prefix`` attribute to ``TestToolShedConfig`` by `@nsoranzo `_ in `#18268 `_ +* Fix tool_shed package unit tests by `@mvdbeek `_ in `#18327 `_ +* Fix one more tool shed unit test by `@mvdbeek `_ in `#18328 `_ ------------------- 24.0.2 (2024-05-07) diff --git a/packages/tool_shed/setup.cfg b/packages/tool_shed/setup.cfg index 7e6cf920f65b..8d44bb610dcf 100644 --- a/packages/tool_shed/setup.cfg +++ b/packages/tool_shed/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-tool-shed url = https://github.com/galaxyproject/galaxy -version = 24.0.3.dev0 +version = 24.0.3 [options] include_package_data = True diff --git a/packages/tool_util/HISTORY.rst b/packages/tool_util/HISTORY.rst index 0cd0756cd585..3db83e2cdf9d 100644 --- a/packages/tool_util/HISTORY.rst +++ b/packages/tool_util/HISTORY.rst @@ -3,11 +3,19 @@ History .. to_doc ------------ -24.0.3.dev0 ------------ +------------------- +24.0.3 (2024-06-28) +------------------- + +========= +Bug fixes +========= +* Allow purge query param, deprecate purge body param by `@mvdbeek `_ in `#18105 `_ +* Make sure that all Linter subclasses are imported for listing them by `@bernt-matthias `_ in `#18339 `_ +* Assign default ``data`` extension on discovered collection output by `@mvdbeek `_ in `#18389 `_ +* Allow in_range validator for selects by `@bernt-matthias `_ in `#18403 `_ ------------------- 24.0.2 (2024-05-07) diff --git a/packages/tool_util/setup.cfg b/packages/tool_util/setup.cfg index baf6bb139f20..89bbbe6c8a6f 100644 --- a/packages/tool_util/setup.cfg +++ b/packages/tool_util/setup.cfg @@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-tool-util url = https://github.com/galaxyproject/galaxy -version = 24.0.3.dev0 +version = 24.0.3 [options] include_package_data = True diff --git a/packages/tours/HISTORY.rst b/packages/tours/HISTORY.rst index 301c24dc1ca2..6101b2ce4079 100644 --- a/packages/tours/HISTORY.rst +++ b/packages/tours/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -24.0.3.dev0 ------------ - +------------------- +24.0.3 (2024-06-28) +------------------- +No recorded changes since last release ------------------- 24.0.2 (2024-05-07) diff --git a/packages/tours/setup.cfg b/packages/tours/setup.cfg index c886acdd2c8f..974aefde15e2 100644 --- a/packages/tours/setup.cfg +++ b/packages/tours/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-tours url = https://github.com/galaxyproject/galaxy -version = 24.0.3.dev0 +version = 24.0.3 [options] include_package_data = True diff --git a/packages/util/HISTORY.rst b/packages/util/HISTORY.rst index 93138fc50329..e47b97079576 100644 --- a/packages/util/HISTORY.rst +++ b/packages/util/HISTORY.rst @@ -3,11 +3,16 @@ History .. to_doc ------------ -24.0.3.dev0 ------------ +------------------- +24.0.3 (2024-06-28) +------------------- + +========= +Bug fixes +========= +* Use config_section to distinguish between galaxy and ts or other apps by `@jdavcs `_ in `#18215 `_ ------------------- 24.0.2 (2024-05-07) diff --git a/packages/util/setup.cfg b/packages/util/setup.cfg index 6707d4ae4be3..f15d77266dca 100644 --- a/packages/util/setup.cfg +++ b/packages/util/setup.cfg @@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-util url = https://github.com/galaxyproject/galaxy -version = 24.0.3.dev0 +version = 24.0.3 [options] include_package_data = True diff --git a/packages/web_apps/HISTORY.rst b/packages/web_apps/HISTORY.rst index 20c08e30ee50..2d5b1bd04a81 100644 --- a/packages/web_apps/HISTORY.rst +++ b/packages/web_apps/HISTORY.rst @@ -3,11 +3,38 @@ History .. to_doc ------------ -24.0.3.dev0 ------------ +------------------- +24.0.3 (2024-06-28) +------------------- + +========= +Bug fixes +========= + +* do not expand datasets that are known to be inaccessible by `@martenson `_ in `#17818 `_ +* Raise exception if collection elements missing during download by `@jdavcs `_ in `#18094 `_ +* Allow purge query param, deprecate purge body param by `@mvdbeek `_ in `#18105 `_ +* Prevent anonymous and inactive users from running workflows by `@ahmedhamidawan `_ in `#18192 `_ +* Fix `make all histories private` with immutable histories by `@davelopez `_ in `#18200 `_ +* Fix pca 3d rendering of tabular files and visualization error handling in general by `@mvdbeek `_ in `#18211 `_ +* Check dataset state when attempting to acces dataset contents by `@mvdbeek `_ in `#18214 `_ +* Restrict job_files access to jobs that are not terminal by `@mvdbeek `_ in `#18217 `_ +* Raise appropriate exception if accessing deleted input file by `@mvdbeek `_ in `#18223 `_ +* Fix element serialization for collections that aren't populated yet by `@mvdbeek `_ in `#18235 `_ +* Skip new history creation if user is anonymous and login is required by `@mvdbeek `_ in `#18319 `_ +* Fix users API serialization when listing users by `@davelopez `_ in `#18329 `_ +* Fix authentication error for anonymous users querying jobs by `@davelopez `_ in `#18333 `_ +* Do not copy purged outputs to object store by `@mvdbeek `_ in `#18342 `_ +* Fix anonymous user job retrieval logic by `@davelopez `_ in `#18358 `_ +* Fix update group API payload model by `@davelopez `_ in `#18374 `_ +* Drop unnecessary escaping for workflow name and annotation by `@mvdbeek `_ in `#18376 `_ + +============= +Other changes +============= +* Decrease log level for expected visualization errors by `@mvdbeek `_ in `#18229 `_ ------------------- 24.0.2 (2024-05-07) diff --git a/packages/web_apps/setup.cfg b/packages/web_apps/setup.cfg index 3a3ca170519e..c7bbee97a2c1 100644 --- a/packages/web_apps/setup.cfg +++ b/packages/web_apps/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-web-apps url = https://github.com/galaxyproject/galaxy -version = 24.0.3.dev0 +version = 24.0.3 [options] include_package_data = True diff --git a/packages/web_framework/HISTORY.rst b/packages/web_framework/HISTORY.rst index d029adefc247..89398814ffbb 100644 --- a/packages/web_framework/HISTORY.rst +++ b/packages/web_framework/HISTORY.rst @@ -3,11 +3,17 @@ History .. to_doc ------------ -24.0.3.dev0 ------------ +------------------- +24.0.3 (2024-06-28) +------------------- + +========= +Bug fixes +========= +* Reset content-length for unhandled exceptions by `@mvdbeek `_ in `#18233 `_ +* More fixes for running the TS with external hgweb by `@mvdbeek `_ in `#18279 `_ ------------------- 24.0.2 (2024-05-07) diff --git a/packages/web_framework/setup.cfg b/packages/web_framework/setup.cfg index eb004420c498..368fbcdb6f74 100644 --- a/packages/web_framework/setup.cfg +++ b/packages/web_framework/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-web-framework url = https://github.com/galaxyproject/galaxy -version = 24.0.3.dev0 +version = 24.0.3 [options] include_package_data = True diff --git a/packages/web_stack/HISTORY.rst b/packages/web_stack/HISTORY.rst index 8817fe6d5db2..f815e743eefe 100644 --- a/packages/web_stack/HISTORY.rst +++ b/packages/web_stack/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ------------ -24.0.3.dev0 ------------ - +------------------- +24.0.3 (2024-06-28) +------------------- +No recorded changes since last release ------------------- 24.0.2 (2024-05-07) diff --git a/packages/web_stack/setup.cfg b/packages/web_stack/setup.cfg index e1a88e0b55f4..94c28f2bd1e1 100644 --- a/packages/web_stack/setup.cfg +++ b/packages/web_stack/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-web-stack url = https://github.com/galaxyproject/galaxy -version = 24.0.3.dev0 +version = 24.0.3 [options] include_package_data = True From ba5e53be704c74ad3f2e361a0bccb4f82c25218b Mon Sep 17 00:00:00 2001 From: Matthias Bernt Date: Fri, 28 Jun 2024 11:08:05 +0200 Subject: [PATCH 5/5] Start work on 24.0.4.dev0 --- lib/galaxy/version.py | 2 +- packages/app/HISTORY.rst | 6 ++++++ packages/app/setup.cfg | 2 +- packages/auth/HISTORY.rst | 6 ++++++ packages/auth/setup.cfg | 2 +- packages/config/HISTORY.rst | 6 ++++++ packages/config/setup.cfg | 2 +- packages/data/HISTORY.rst | 6 ++++++ packages/data/setup.cfg | 2 +- packages/files/HISTORY.rst | 6 ++++++ packages/files/setup.cfg | 2 +- packages/job_execution/HISTORY.rst | 6 ++++++ packages/job_execution/setup.cfg | 2 +- packages/job_metrics/HISTORY.rst | 6 ++++++ packages/job_metrics/setup.cfg | 2 +- packages/navigation/HISTORY.rst | 6 ++++++ packages/navigation/setup.cfg | 2 +- packages/objectstore/HISTORY.rst | 6 ++++++ packages/objectstore/setup.cfg | 2 +- packages/schema/HISTORY.rst | 6 ++++++ packages/schema/setup.cfg | 2 +- packages/selenium/HISTORY.rst | 6 ++++++ packages/selenium/setup.cfg | 2 +- packages/test_api/HISTORY.rst | 6 ++++++ packages/test_api/setup.cfg | 2 +- packages/test_base/HISTORY.rst | 6 ++++++ packages/test_base/setup.cfg | 2 +- packages/test_driver/HISTORY.rst | 6 ++++++ packages/test_driver/setup.cfg | 2 +- packages/tool_shed/HISTORY.rst | 6 ++++++ packages/tool_shed/setup.cfg | 2 +- packages/tool_util/HISTORY.rst | 6 ++++++ packages/tool_util/setup.cfg | 2 +- packages/tours/HISTORY.rst | 6 ++++++ packages/tours/setup.cfg | 2 +- packages/util/HISTORY.rst | 6 ++++++ packages/util/setup.cfg | 2 +- packages/web_apps/HISTORY.rst | 6 ++++++ packages/web_apps/setup.cfg | 2 +- packages/web_framework/HISTORY.rst | 6 ++++++ packages/web_framework/setup.cfg | 2 +- packages/web_stack/HISTORY.rst | 6 ++++++ packages/web_stack/setup.cfg | 2 +- 43 files changed, 148 insertions(+), 22 deletions(-) diff --git a/lib/galaxy/version.py b/lib/galaxy/version.py index 2bd35d82d11e..7c7a61bc3cd3 100644 --- a/lib/galaxy/version.py +++ b/lib/galaxy/version.py @@ -1,3 +1,3 @@ VERSION_MAJOR = "24.0" -VERSION_MINOR = "3" +VERSION_MINOR = "4.dev0" VERSION = VERSION_MAJOR + (f".{VERSION_MINOR}" if VERSION_MINOR else "") diff --git a/packages/app/HISTORY.rst b/packages/app/HISTORY.rst index 910d4d34ccb5..69b680efe886 100644 --- a/packages/app/HISTORY.rst +++ b/packages/app/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +24.0.4.dev0 +----------- + + + ------------------- 24.0.3 (2024-06-28) ------------------- diff --git a/packages/app/setup.cfg b/packages/app/setup.cfg index 4f57e2a36bcb..2b631dfb589f 100644 --- a/packages/app/setup.cfg +++ b/packages/app/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-app url = https://github.com/galaxyproject/galaxy -version = 24.0.3 +version = 24.0.4.dev0 [options] include_package_data = True diff --git a/packages/auth/HISTORY.rst b/packages/auth/HISTORY.rst index e502b35f705a..211f29f16b51 100644 --- a/packages/auth/HISTORY.rst +++ b/packages/auth/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +24.0.4.dev0 +----------- + + + ------------------- 24.0.3 (2024-06-28) ------------------- diff --git a/packages/auth/setup.cfg b/packages/auth/setup.cfg index b1cdf831d6af..d210369bef00 100644 --- a/packages/auth/setup.cfg +++ b/packages/auth/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-auth url = https://github.com/galaxyproject/galaxy -version = 24.0.3 +version = 24.0.4.dev0 [options] include_package_data = True diff --git a/packages/config/HISTORY.rst b/packages/config/HISTORY.rst index 827aee3837e0..754ae034b4d6 100644 --- a/packages/config/HISTORY.rst +++ b/packages/config/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +24.0.4.dev0 +----------- + + + ------------------- 24.0.3 (2024-06-28) ------------------- diff --git a/packages/config/setup.cfg b/packages/config/setup.cfg index 21ecab811ac0..b87b97abdc83 100644 --- a/packages/config/setup.cfg +++ b/packages/config/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-config url = https://github.com/galaxyproject/galaxy -version = 24.0.3 +version = 24.0.4.dev0 [options] include_package_data = True diff --git a/packages/data/HISTORY.rst b/packages/data/HISTORY.rst index c3c4cf86a1bc..48327e31cbb8 100644 --- a/packages/data/HISTORY.rst +++ b/packages/data/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +24.0.4.dev0 +----------- + + + ------------------- 24.0.3 (2024-06-28) ------------------- diff --git a/packages/data/setup.cfg b/packages/data/setup.cfg index 6e76b0e7ce44..200271746c28 100644 --- a/packages/data/setup.cfg +++ b/packages/data/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-data url = https://github.com/galaxyproject/galaxy -version = 24.0.3 +version = 24.0.4.dev0 [options] include_package_data = True diff --git a/packages/files/HISTORY.rst b/packages/files/HISTORY.rst index f5414a13d22e..24095fb72b91 100644 --- a/packages/files/HISTORY.rst +++ b/packages/files/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +24.0.4.dev0 +----------- + + + ------------------- 24.0.3 (2024-06-28) ------------------- diff --git a/packages/files/setup.cfg b/packages/files/setup.cfg index 144c7e3b0e48..ed8b2b11d742 100644 --- a/packages/files/setup.cfg +++ b/packages/files/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-files url = https://github.com/galaxyproject/galaxy -version = 24.0.3 +version = 24.0.4.dev0 [options] include_package_data = True diff --git a/packages/job_execution/HISTORY.rst b/packages/job_execution/HISTORY.rst index 416c66fcbcfa..7c529fa8c2bf 100644 --- a/packages/job_execution/HISTORY.rst +++ b/packages/job_execution/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +24.0.4.dev0 +----------- + + + ------------------- 24.0.3 (2024-06-28) ------------------- diff --git a/packages/job_execution/setup.cfg b/packages/job_execution/setup.cfg index 06428a3e4211..193996bffc31 100644 --- a/packages/job_execution/setup.cfg +++ b/packages/job_execution/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-job-execution url = https://github.com/galaxyproject/galaxy -version = 24.0.3 +version = 24.0.4.dev0 [options] include_package_data = True diff --git a/packages/job_metrics/HISTORY.rst b/packages/job_metrics/HISTORY.rst index f264ad382ab8..0e75b64fa4ff 100644 --- a/packages/job_metrics/HISTORY.rst +++ b/packages/job_metrics/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +24.0.4.dev0 +----------- + + + ------------------- 24.0.3 (2024-06-28) ------------------- diff --git a/packages/job_metrics/setup.cfg b/packages/job_metrics/setup.cfg index 39238491f842..a96be9ebae0a 100644 --- a/packages/job_metrics/setup.cfg +++ b/packages/job_metrics/setup.cfg @@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-job-metrics url = https://github.com/galaxyproject/galaxy -version = 24.0.3 +version = 24.0.4.dev0 [options] include_package_data = True diff --git a/packages/navigation/HISTORY.rst b/packages/navigation/HISTORY.rst index 4416766c90c5..088ac787d89f 100644 --- a/packages/navigation/HISTORY.rst +++ b/packages/navigation/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +24.0.4.dev0 +----------- + + + ------------------- 24.0.3 (2024-06-28) ------------------- diff --git a/packages/navigation/setup.cfg b/packages/navigation/setup.cfg index 76b9b55bcfd9..2230a0e10ddb 100644 --- a/packages/navigation/setup.cfg +++ b/packages/navigation/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-navigation url = https://github.com/galaxyproject/galaxy -version = 24.0.3 +version = 24.0.4.dev0 [options] include_package_data = True diff --git a/packages/objectstore/HISTORY.rst b/packages/objectstore/HISTORY.rst index dd59c02c8d2d..3a4a2b077028 100644 --- a/packages/objectstore/HISTORY.rst +++ b/packages/objectstore/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +24.0.4.dev0 +----------- + + + ------------------- 24.0.3 (2024-06-28) ------------------- diff --git a/packages/objectstore/setup.cfg b/packages/objectstore/setup.cfg index 2d38646fa096..64eff49bea42 100644 --- a/packages/objectstore/setup.cfg +++ b/packages/objectstore/setup.cfg @@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-objectstore url = https://github.com/galaxyproject/galaxy -version = 24.0.3 +version = 24.0.4.dev0 [options] include_package_data = True diff --git a/packages/schema/HISTORY.rst b/packages/schema/HISTORY.rst index eae72f221ec3..b98dc273e4e4 100644 --- a/packages/schema/HISTORY.rst +++ b/packages/schema/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +24.0.4.dev0 +----------- + + + ------------------- 24.0.3 (2024-06-28) ------------------- diff --git a/packages/schema/setup.cfg b/packages/schema/setup.cfg index 5c95743f9d2b..a6a2639d67f3 100644 --- a/packages/schema/setup.cfg +++ b/packages/schema/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-schema url = https://github.com/galaxyproject/galaxy -version = 24.0.3 +version = 24.0.4.dev0 [options] include_package_data = True diff --git a/packages/selenium/HISTORY.rst b/packages/selenium/HISTORY.rst index 5c367a9c0082..33a7f6e17823 100644 --- a/packages/selenium/HISTORY.rst +++ b/packages/selenium/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +24.0.4.dev0 +----------- + + + ------------------- 24.0.3 (2024-06-28) ------------------- diff --git a/packages/selenium/setup.cfg b/packages/selenium/setup.cfg index 8a1e790dee47..14ea7d7006ab 100644 --- a/packages/selenium/setup.cfg +++ b/packages/selenium/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-selenium url = https://github.com/galaxyproject/galaxy -version = 24.0.3 +version = 24.0.4.dev0 [options] include_package_data = True diff --git a/packages/test_api/HISTORY.rst b/packages/test_api/HISTORY.rst index 3e22cd243564..983b04e9b184 100644 --- a/packages/test_api/HISTORY.rst +++ b/packages/test_api/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +24.0.4.dev0 +----------- + + + ------------------- 24.0.3 (2024-06-28) ------------------- diff --git a/packages/test_api/setup.cfg b/packages/test_api/setup.cfg index 0ec101d2d806..372ed79828f6 100644 --- a/packages/test_api/setup.cfg +++ b/packages/test_api/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-test-api url = https://github.com/galaxyproject/galaxy -version = 24.0.3 +version = 24.0.4.dev0 [options] include_package_data = True diff --git a/packages/test_base/HISTORY.rst b/packages/test_base/HISTORY.rst index adf626c7f01c..00cc5ad475e8 100644 --- a/packages/test_base/HISTORY.rst +++ b/packages/test_base/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +24.0.4.dev0 +----------- + + + ------------------- 24.0.3 (2024-06-28) ------------------- diff --git a/packages/test_base/setup.cfg b/packages/test_base/setup.cfg index 967ac56ea519..fce4c7745a46 100644 --- a/packages/test_base/setup.cfg +++ b/packages/test_base/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-test-base url = https://github.com/galaxyproject/galaxy -version = 24.0.3 +version = 24.0.4.dev0 [options] include_package_data = True diff --git a/packages/test_driver/HISTORY.rst b/packages/test_driver/HISTORY.rst index c2133e4a7cdf..1553bfbe2701 100644 --- a/packages/test_driver/HISTORY.rst +++ b/packages/test_driver/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +24.0.4.dev0 +----------- + + + ------------------- 24.0.3 (2024-06-28) ------------------- diff --git a/packages/test_driver/setup.cfg b/packages/test_driver/setup.cfg index 77b60e008af6..2f2654063eef 100644 --- a/packages/test_driver/setup.cfg +++ b/packages/test_driver/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-test-driver url = https://github.com/galaxyproject/galaxy -version = 24.0.3 +version = 24.0.4.dev0 [options] include_package_data = True diff --git a/packages/tool_shed/HISTORY.rst b/packages/tool_shed/HISTORY.rst index 64bf65d3282a..6aaaee41d650 100644 --- a/packages/tool_shed/HISTORY.rst +++ b/packages/tool_shed/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +24.0.4.dev0 +----------- + + + ------------------- 24.0.3 (2024-06-28) ------------------- diff --git a/packages/tool_shed/setup.cfg b/packages/tool_shed/setup.cfg index 8d44bb610dcf..04489c1513b1 100644 --- a/packages/tool_shed/setup.cfg +++ b/packages/tool_shed/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-tool-shed url = https://github.com/galaxyproject/galaxy -version = 24.0.3 +version = 24.0.4.dev0 [options] include_package_data = True diff --git a/packages/tool_util/HISTORY.rst b/packages/tool_util/HISTORY.rst index 3db83e2cdf9d..5fce26b9eaa4 100644 --- a/packages/tool_util/HISTORY.rst +++ b/packages/tool_util/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +24.0.4.dev0 +----------- + + + ------------------- 24.0.3 (2024-06-28) ------------------- diff --git a/packages/tool_util/setup.cfg b/packages/tool_util/setup.cfg index 89bbbe6c8a6f..03ae68175d14 100644 --- a/packages/tool_util/setup.cfg +++ b/packages/tool_util/setup.cfg @@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-tool-util url = https://github.com/galaxyproject/galaxy -version = 24.0.3 +version = 24.0.4.dev0 [options] include_package_data = True diff --git a/packages/tours/HISTORY.rst b/packages/tours/HISTORY.rst index 6101b2ce4079..032077da403a 100644 --- a/packages/tours/HISTORY.rst +++ b/packages/tours/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +24.0.4.dev0 +----------- + + + ------------------- 24.0.3 (2024-06-28) ------------------- diff --git a/packages/tours/setup.cfg b/packages/tours/setup.cfg index 974aefde15e2..b67a6e6bcc02 100644 --- a/packages/tours/setup.cfg +++ b/packages/tours/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-tours url = https://github.com/galaxyproject/galaxy -version = 24.0.3 +version = 24.0.4.dev0 [options] include_package_data = True diff --git a/packages/util/HISTORY.rst b/packages/util/HISTORY.rst index e47b97079576..d1beff509043 100644 --- a/packages/util/HISTORY.rst +++ b/packages/util/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +24.0.4.dev0 +----------- + + + ------------------- 24.0.3 (2024-06-28) ------------------- diff --git a/packages/util/setup.cfg b/packages/util/setup.cfg index f15d77266dca..e2dc10aac397 100644 --- a/packages/util/setup.cfg +++ b/packages/util/setup.cfg @@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-util url = https://github.com/galaxyproject/galaxy -version = 24.0.3 +version = 24.0.4.dev0 [options] include_package_data = True diff --git a/packages/web_apps/HISTORY.rst b/packages/web_apps/HISTORY.rst index 2d5b1bd04a81..53ef37b14ee1 100644 --- a/packages/web_apps/HISTORY.rst +++ b/packages/web_apps/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +24.0.4.dev0 +----------- + + + ------------------- 24.0.3 (2024-06-28) ------------------- diff --git a/packages/web_apps/setup.cfg b/packages/web_apps/setup.cfg index c7bbee97a2c1..1f95f6741dca 100644 --- a/packages/web_apps/setup.cfg +++ b/packages/web_apps/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-web-apps url = https://github.com/galaxyproject/galaxy -version = 24.0.3 +version = 24.0.4.dev0 [options] include_package_data = True diff --git a/packages/web_framework/HISTORY.rst b/packages/web_framework/HISTORY.rst index 89398814ffbb..8027aefe1a29 100644 --- a/packages/web_framework/HISTORY.rst +++ b/packages/web_framework/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +24.0.4.dev0 +----------- + + + ------------------- 24.0.3 (2024-06-28) ------------------- diff --git a/packages/web_framework/setup.cfg b/packages/web_framework/setup.cfg index 368fbcdb6f74..26e85990ffb7 100644 --- a/packages/web_framework/setup.cfg +++ b/packages/web_framework/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-web-framework url = https://github.com/galaxyproject/galaxy -version = 24.0.3 +version = 24.0.4.dev0 [options] include_package_data = True diff --git a/packages/web_stack/HISTORY.rst b/packages/web_stack/HISTORY.rst index f815e743eefe..e9a40735b9a1 100644 --- a/packages/web_stack/HISTORY.rst +++ b/packages/web_stack/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +24.0.4.dev0 +----------- + + + ------------------- 24.0.3 (2024-06-28) ------------------- diff --git a/packages/web_stack/setup.cfg b/packages/web_stack/setup.cfg index 94c28f2bd1e1..da5ee355ff08 100644 --- a/packages/web_stack/setup.cfg +++ b/packages/web_stack/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-web-stack url = https://github.com/galaxyproject/galaxy -version = 24.0.3 +version = 24.0.4.dev0 [options] include_package_data = True