Difference in regulon output depending on data subset used

[Abigail575]

Hi!

I have a couple of questions:

1. Due to limited scratch storage I ran the scenicplus pipeline on a subset of my multiomics data of 2 cell types. Now that I can run the pipeline on my whole dataset, I've noticed the regulons generated do not include some of those generated when I ran the subset of my data. (My assumption is that the discrepancies arise either at the motif enrichment stage or when running the scenicplus wrapper.) Is there any way to retrieve certain regulons when running the pipeline with different subsets of my data?

2. Once the regulons are generated, is there a quick way of sorting them by the cell population in which they are most expressed and to build mini GRNs according to cell type?

Thank you :)