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When it comes to the pycistarget part of the tutorial, the following files are required:
rankings_db = os.path.join(db_fpath, 'cluster_SCREEN.regions_vs_motifs.rankings.v2.feather')
scores_db = os.path.join(db_fpath, 'cluster_SCREEN.regions_vs_motifs.scores.v2.feather')
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Hello,
I am following the PBMC tutorial for getting familiar with SCENIC+ functionalities:
https://github.com/aertslab/scenicplus/blob/main/notebooks/pbmc_multiome_tutorial.ipynb
When it comes to the pycistarget part of the tutorial, the following files are required:
rankings_db = os.path.join(db_fpath, 'cluster_SCREEN.regions_vs_motifs.rankings.v2.feather')
scores_db = os.path.join(db_fpath, 'cluster_SCREEN.regions_vs_motifs.scores.v2.feather')
I was not able to find these two exact files in the SCENIC+ website or documentation. I assume that they should correspond to the scores and ranking files available here:
https://resources.aertslab.org/cistarget/databases/homo_sapiens/hg38/screen/mc_v10_clust/region_based/
Is this correct?
Thanks,
Vincenzo
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