requirements.in

pycistarget @ git+https://github.com/aertslab/pycistarget
pycisTopic @ git+https://github.com/aertslab/pycisTopic
loomxpy @ git+https://github.com/aertslab/LoomXpy@main
pyscenic @ git+https://github.com/aertslab/pySCENIC@master
adjustText==1.0.4
anndata==0.10.5.post1
annoy==1.17.3
arboreto==0.1.6
attr==0.3.2
attrs==23.2.0
bbknn==1.6.0
beautifulsoup4==4.12.3
bs4==0.0.2
ctxcore==0.2.0
Cython==0.29.37
cytoolz==0.12.3
dask==2024.2.1
dill==0.3.8
gensim==4.3.2
gseapy==0.10.8
h5py==3.10.0
harmonypy==0.0.9
igraph==0.11.4
imageio==2.34.0
importlib-metadata==7.0.1
importlib_resources==6.1.2
intervaltree==3.1.0
joblib==1.3.2
kaleido==0.2.1
lda==3.0.0
leidenalg==0.10.2
lxml==5.1.0
MACS2==2.2.9.1
matplotlib==3.6.3
mudata==0.2.3
ncls==0.0.68
networkx==3.2.1
numba==0.59.0
numexpr==2.9.0
numpy==1.26.4
numpy-groupies==0.10.2
pandas==1.5.0
plotly==5.19.0
plotnine==0.12.4
polars==0.20.13
pyarrow==15.0.0
pyarrow-hotfix==0.6
pybedtools==0.9.1
pybigtools==0.1.2
pyBigWig==0.3.22
pybiomart==0.2.0
pyfasta==0.5.2
pygam==0.9.0
pyranges==0.0.111
pyrle==0.0.39
pysam==0.22.0
pyvis==0.3.2
ray==2.9.3
requests==2.31.0
requests-cache==1.2.0
scanorama==1.7.4
scanpy==1.8.2
scatac_fragment_tools==0.1.0
scikit-image==0.22.0
scikit-learn==1.3.2
scipy==1.12.0
scrublet==0.2.3
seaborn==0.13.2
snakemake==8.5.5
snakemake-interface-common==1.17.1
snakemake-interface-executor-plugins==8.2.0
snakemake-interface-report-plugins==1.0.0
snakemake-interface-storage-plugins==3.1.1
statistics==1.0.3.5
statsmodels==0.14.1
tmtoolkit==0.12.0
tqdm==4.66.2
tspex==0.6.3
typing==3.7.4.3
umap-learn==0.5.5