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Makefile
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Makefile
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SERVICE = abbyjergercontigfilter
SERVICE_CAPS = abbyjergerContigFilter
SPEC_FILE = abbyjergerContigFilter.spec
URL = https://kbase.us/services/abbyjergercontigfilter
DIR = $(shell pwd)
LIB_DIR = lib
SCRIPTS_DIR = scripts
TEST_DIR = test
LBIN_DIR = bin
WORK_DIR = /kb/module/work/tmp
EXECUTABLE_SCRIPT_NAME = run_$(SERVICE_CAPS)_async_job.sh
STARTUP_SCRIPT_NAME = start_server.sh
TEST_SCRIPT_NAME = run_tests.sh
.PHONY: test
default: compile
all: compile build build-startup-script build-executable-script build-test-script
compile:
kb-sdk compile $(SPEC_FILE) \
--out $(LIB_DIR) \
--pysrvname $(SERVICE_CAPS).$(SERVICE_CAPS)Server \
--pyimplname $(SERVICE_CAPS).$(SERVICE_CAPS)Impl;
build:
chmod +x $(SCRIPTS_DIR)/entrypoint.sh
build-executable-script:
mkdir -p $(LBIN_DIR)
echo '#!/bin/bash' > $(LBIN_DIR)/$(EXECUTABLE_SCRIPT_NAME)
echo 'script_dir=$$(dirname "$$(readlink -f "$$0")")' >> $(LBIN_DIR)/$(EXECUTABLE_SCRIPT_NAME)
echo 'export PYTHONPATH=$$script_dir/../$(LIB_DIR):$$PATH:$$PYTHONPATH' >> $(LBIN_DIR)/$(EXECUTABLE_SCRIPT_NAME)
echo 'python -u $$script_dir/../$(LIB_DIR)/$(SERVICE_CAPS)/$(SERVICE_CAPS)Server.py $$1 $$2 $$3' >> $(LBIN_DIR)/$(EXECUTABLE_SCRIPT_NAME)
chmod +x $(LBIN_DIR)/$(EXECUTABLE_SCRIPT_NAME)
build-startup-script:
mkdir -p $(LBIN_DIR)
echo '#!/bin/bash' > $(SCRIPTS_DIR)/$(STARTUP_SCRIPT_NAME)
echo 'script_dir=$$(dirname "$$(readlink -f "$$0")")' >> $(SCRIPTS_DIR)/$(STARTUP_SCRIPT_NAME)
echo 'export KB_DEPLOYMENT_CONFIG=$$script_dir/../deploy.cfg' >> $(SCRIPTS_DIR)/$(STARTUP_SCRIPT_NAME)
echo 'export PYTHONPATH=$$script_dir/../$(LIB_DIR):$$PATH:$$PYTHONPATH' >> $(SCRIPTS_DIR)/$(STARTUP_SCRIPT_NAME)
echo 'uwsgi --master --processes 5 --threads 5 --http :5000 --wsgi-file $$script_dir/../$(LIB_DIR)/$(SERVICE_CAPS)/$(SERVICE_CAPS)Server.py' >> $(SCRIPTS_DIR)/$(STARTUP_SCRIPT_NAME)
chmod +x $(SCRIPTS_DIR)/$(STARTUP_SCRIPT_NAME)
build-test-script:
echo '#!/bin/bash' > $(TEST_DIR)/$(TEST_SCRIPT_NAME)
echo 'script_dir=$$(dirname "$$(readlink -f "$$0")")' >> $(TEST_DIR)/$(TEST_SCRIPT_NAME)
echo 'export KB_DEPLOYMENT_CONFIG=$$script_dir/../deploy.cfg' >> $(TEST_DIR)/$(TEST_SCRIPT_NAME)
echo 'export KB_AUTH_TOKEN=`cat /kb/module/work/token`' >> $(TEST_DIR)/$(TEST_SCRIPT_NAME)
echo 'echo "Removing temp files..."' >> $(TEST_DIR)/$(TEST_SCRIPT_NAME)
echo 'rm -rf $(WORK_DIR)/*' >> $(TEST_DIR)/$(TEST_SCRIPT_NAME)
echo 'echo "...done removing temp files."' >> $(TEST_DIR)/$(TEST_SCRIPT_NAME)
echo 'export PYTHONPATH=$$script_dir/../$(LIB_DIR):$$PATH:$$PYTHONPATH' >> $(TEST_DIR)/$(TEST_SCRIPT_NAME)
echo 'cd $$script_dir/../$(TEST_DIR)' >> $(TEST_DIR)/$(TEST_SCRIPT_NAME)
echo 'python -m nose --with-coverage --cover-package=$(SERVICE_CAPS) --cover-html --cover-html-dir=/kb/module/work/test_coverage --nocapture --nologcapture .' >> $(TEST_DIR)/$(TEST_SCRIPT_NAME)
chmod +x $(TEST_DIR)/$(TEST_SCRIPT_NAME)
test:
if [ ! -f /kb/module/work/token ]; then echo -e '\nOutside a docker container please run "kb-sdk test" rather than "make test"\n' && exit 1; fi
bash $(TEST_DIR)/$(TEST_SCRIPT_NAME)
clean:
rm -rfv $(LBIN_DIR)