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context_manager.py
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context_manager.py
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from typing import List, Dict, Tuple, Union
from dataclasses import dataclass, asdict
from glob import glob
from nltk.tokenize import sent_tokenize, word_tokenize
import sys
import json
import re
import random
import os
import logging
import openai
import numpy as np
import pickle
from bs4 import BeautifulSoup
from tqdm import tqdm
from transformers import GPT2Tokenizer
import time
import spacy
from datasets import load_dataset
from filelock import FileLock
import traceback
@dataclass
class LexicalUnits:
unit_type: str
text: List[str]
self_info: List[float] = None
def __add__(self, other):
assert self.unit_type == other.unit_type, 'Cannot add two different unit types'
return LexicalUnits(self.unit_type, self.text + other.text, self.self_info + other.self_info)
def __radd__(self, other):
if other == 0:
return self
return NotImplementedError()
def add_to_head(self, token, self_info):
return LexicalUnits(self.unit_type, [token] + self.text, [self_info] + self.self_info)
def add_to_tail(self, token, self_info):
return LexicalUnits(self.unit_type, self.text + [token], self.self_info + [self_info])
@dataclass
class ArxivArticle:
text: str
entry_id: str
title: str
sections: Dict[str, str]
context_type: str = None
units: List[LexicalUnits] = None
def __post_init__(self):
self.id = self.entry_id.split("/")[-1]
def __repr__(self):
return f"ArxivArticle: {self.title}\n\n"
@dataclass
class ConversationArticle(ArxivArticle):
num_rounds: int = 0
prompt: str = None
context: List[Tuple[str, str]] = None
def __repr__(self):
return f"ConversationArticle: {self.entry_id}\n\n"
@dataclass
class Conversation:
id: str
context: List[Tuple[str, str]]
@dataclass
class ArxivContext:
text: str
entry_id: str
context: str
context_masked: bool
masked_sents: List[str] = None
def __post_init__(self):
self.id = self.entry_id.split("/")[-1]
def __repr__(self):
return f"ArxivContext:\n --{self.context}\n\n"
class ArxivContextManager:
"""
Loading arxiv articles, and process the article to sections.
Obtaining the context of interest and do the partially masking (optional).
Args:
- mask_method: "Random", "self-info-sent" or "no". Randomly mask the context or mask the context based on the perplexity.
"""
def __init__(
self,
path : str,
mask_ratio = 0.2,
keep_leading_word = True,
num_lead_words = 3,
ppl_threshold = None,
tokenizer = None,
compute_self_info = True,
sent_mask_token = "<...some content omitted.>",
phrase_mask_token = "",
num_articles = 200,
lang = "en",
):
self.path = path
self.lang = lang
self._prepare_phrase_tokenizer()
self.num_articles = num_articles
self.tokenizer = GPT2Tokenizer.from_pretrained("gpt2") if tokenizer is None else tokenizer
self.keep_leading_word = keep_leading_word
self.num_lead_words = num_lead_words
self.ppl_threshold = ppl_threshold
self.max_token_len = 1800
self.sent_level_self_info = True
self.mask_ratio = mask_ratio
self.mask_token = sent_mask_token
self.phrase_mask_token = phrase_mask_token
# self.sent_tokenize_pattern = r"((?<!e\.g)(?<!i\.e)(?<!w\.r\.t)(?<=\.)\s)|(?<=\?\s)|(?<=!\s)"
# self.sent_tokenize_pattern = r"(?<!e\.g)(?<!i\.e)(?<=\.\s)|(?<=\?\s)|(?<=!\s)"
self.sent_tokenize_pattern = r"(?<!\w\.\w.)(?<![A-Z][a-z]\.)(?<=\.|\?)\s"
self.load_articles(path)
self._prepare_self_info()
def _prepare_phrase_tokenizer(self):
# we use space to tokenize sentence into phrases
# for English, we should use `spacy.load("en_core_web_sm").add_pipe('merge_noun_chunks')`
# for Chinese, use `nlp = spacy.load('zh_core_web_sm')`` directly
lang = self.lang
if lang == "en":
self.nlp = spacy.load("en_core_web_sm", disable=["ner"])
self.nlp.add_pipe('merge_noun_chunks')
elif lang == "zh":
self.nlp = spacy.load('zh_core_web_sm', disable=["ner"])
def _prepare_self_info(self):
logging.info("Preparing self information...")
articles = []
for article_idx, article in tqdm(enumerate(self.articles), desc="Preparing self information"):
if article.units is not None:
# means the LexicalUnits has been calculated
articles.append(article)
continue
intro = self.beautify_context(article.sections[0])
if not self.varify_context_length(intro):
continue
sents = re.split(self.sent_tokenize_pattern, intro)
sents = [sent.strip() for sent in sents if sent.strip()]
if len(sents) == 0:
continue
try:
article.units = self._lexical_unit(sents)
except Exception as e:
logging.error(f"Error in article {article_idx}: {e}")
traceback.print_exc()
articles = articles + self.articles[article_idx:]
self.articles = articles
self._check_point(f'Error _preparing_self_info {article_idx}: {e}')
exit(1)
articles.append(article)
self.articles = articles
self._check_point('Finished _preparing_self_info')
def _lexical_unit(self, sents):
if self.sent_level_self_info:
sent_self_info = []
all_noun_phrases = []
all_noun_phrases_info = []
all_tokens = []
all_token_self_info = []
for sent in sents:
tokens, self_info = get_self_information(sent)
sent_self_info.append(np.mean(self_info))
all_tokens.extend(tokens)
all_token_self_info.extend(self_info)
noun_phrases, noun_phrases_info = self._calculate_lexical_unit(tokens, self_info)
if len(all_noun_phrases) != 0:
noun_phrases[0] = f" {noun_phrases[0]}"
all_noun_phrases.extend(noun_phrases)
all_noun_phrases_info.extend(noun_phrases_info)
return [
LexicalUnits('sent', text=sents, self_info=sent_self_info),
LexicalUnits('phrase', text=all_noun_phrases, self_info=all_noun_phrases_info),
LexicalUnits('token', text=all_tokens, self_info=all_token_self_info)
]
else:
sents = sent_tokenize(context)
context = ' '.join(sents)
tokens, self_info = get_self_information(context)
sent_lexical_units, phrase_lexical_units = self._calculate_lexical_unit(tokens, self_info)
return [
sent_lexical_units,
phrase_lexical_units,
LexicalUnits('token', text=tokens, self_info=self_info)
]
def _calculate_lexical_unit(self, tokens, self_info):
def _unit_info(tokens, self_info, units):
current_unit_idx = 0
current_position = 0
unit_self_info = [[] for _ in range(len(units))]
for idx, (token, info) in enumerate(zip(tokens, self_info)):
current_position += len(token)
if current_position == len(units[current_unit_idx]):
unit_self_info[current_unit_idx].append(info)
current_position = current_position - len(units[current_unit_idx])
current_unit_idx += 1
elif current_position > len(units[current_unit_idx]):
counter_ = 1
current_position = current_position - len(units[current_unit_idx])
current_unit_idx += 1
while current_position >= len(units[current_unit_idx]):
counter_ += 1
current_position = current_position - len(units[current_unit_idx])
current_unit_idx += 1
if current_unit_idx >= len(units):
break
partial_info = info/counter_
for _ in range(counter_):
unit_self_info[(current_unit_idx-1) - _].append(partial_info)
else:
if token == " ":
continue
unit_self_info[current_unit_idx].append(info)
unit_self_info_ = [np.mean(info) for info in unit_self_info]
return unit_self_info_
def _noun_phrases(sent):
noun_phrases = []
doc = self.nlp(sent)
for index, chunk in enumerate(doc):
if index == 0:
noun_phrases.append(chunk.text)
else:
noun_phrases.append(doc[index-1].whitespace_ + chunk.text)
return noun_phrases
if self.sent_level_self_info:
# in this case, the self_info is for each sentence
# we only need to calculate the self_info for each phrase
sent = ''.join(tokens)
# noun_phrases = [chunk.text for chunk in self.nlp(sent).noun_chunks]
noun_phrases = _noun_phrases(sent)
# noun_phrases[-1] = noun_phrases[-1] + ' '
noun_phrases_info = _unit_info(tokens, self_info, noun_phrases)
return noun_phrases, noun_phrases_info
else:
# in this case, the self_info is for the entire context
# we need to first calculate the self_info for each sentence
# then calculate the self_info for each phrase
sents = re.split(self.sent_tokenize_pattern, ''.join(tokens))
sents = [sents[0][:-1]] + [' ' + sent[:-1] for sent in sents[1:-1]] + [' ' + sents[-1]]
sent_self_info = _unit_info(tokens, self_info, sents)
# now we got sentence self_info, we need to calculate the self_info for each phrase
all_noun_phrases = []
all_noun_phrases_info = []
for sent, sent_info in zip(sents, sent_self_info):
noun_phrases = _noun_phrases(sent)
# noun_phrases[-1] = noun_phrases[-1] + ' '
noun_phrases_info = _unit_info(tokens, self_info, noun_phrases)
all_noun_phrases.extend(noun_phrases)
all_noun_phrases_info.extend(noun_phrases_info)
return LexicalUnits('sent', text = sents, self_info = sent_self_info), LexicalUnits('phrase', text = all_noun_phrases, self_info = all_noun_phrases_info)
def load_articles(self, path: str, start_point : int = 0) -> List[ArxivArticle]:
self.articles = []
logging.info(f"Start preprocessing Arxiv articles from {path}")
for file_path in tqdm(glob(os.path.join(path, "*.json"))[:self.num_articles], desc="Loading Arxiv articles"):
with open(file_path, "r", encoding='utf-8', errors='ignore') as f:
article = json.load(f)
entry_id = article["entry_id"]
title = article["title"]
text = article["text"]
# remove anything before introduction
text = re.sub(r"^.*?(§)", r"\1", text, flags=re.DOTALL)
# split article into sections
sections = re.split(r"(?<!§\.)§\s", text)
sections = [self.beautify_context(section) for section in sections if section.strip()]
if len(sections) == 0:
continue
self.articles.append(ArxivArticle(text=text, entry_id=entry_id, title=title, sections=sections))
logging.info(f"Finish preprocessing Arxiv articles. Loaded {len(self.articles)} documents.")
def beautify_context(self, context: str) -> str:
context = context.replace("<cit.>", '').replace('<ref>', '')
context = re.sub(r"\s+", " ", context)
context = re.sub(r"\n+", " ", context)
return context
def varify_context_length(self, context: str) -> bool:
if context is None:
return False
num_tokens = len(self.tokenizer(context)['input_ids'])
if num_tokens > self.max_token_len:
return False
return True
def generate_context(self, mask_method: str, mask_level: str = 'sent', num_articles : int = None) -> List[ArxivContext]:
assert mask_method in ["Random", "self-info", "no", "no2"]
resulting_contexts = []
if num_articles is None or num_articles > len(self.articles):
num_articles = len(self.articles)
for article in tqdm(self.articles, desc="Generating contexts"):
if len(resulting_contexts) >= num_articles:
break
if not self.varify_context_length(self.beautify_context(article.sections[0])):
continue
if mask_level == 'sent':
lexical_units = article.units[0]
assert lexical_units.unit_type == 'sent'
elif mask_level == 'phrase':
lexical_units = article.units[1]
assert lexical_units.unit_type == 'phrase'
elif mask_level == 'token':
lexical_units = article.units[2]
assert lexical_units.unit_type == 'token'
if mask_method == "Random":
context, masked_sents = self.random_mask_context(lexical_units.text, mask_level)
elif mask_method == "self-info":
context, masked_sents = self.self_info_mask(lexical_units.text, lexical_units.self_info, mask_level)
elif ( self.__class__.__name__ == 'ConversationContextManager' and \
mask_method == "no" ):
# in this case, we want to use the last sentence as the reference answer
context = article.context[-1][1]
masked_sents = None
elif ( self.__class__.__name__ == 'ConversationContextManager' and \
mask_method == "no2" ):
# in this case, we use the entire context (except the last responses) as prompt
context = article.prompt
masked_sents = None
elif mask_method == "no" or mask_method == "no2":
context = article.sections[0]
context = self.beautify_context(context)
masked_sents = None
resulting_contexts.append(
ArxivContext(text=article.text, entry_id=article.entry_id, context=context, context_masked=(mask_method != "no"), masked_sents=masked_sents)
)
logging.info(f"Finish generating {len(resulting_contexts)} contexts.")
return resulting_contexts
def _check_point(self, message = '') -> bool:
pickle_file = os.path.join(self.path, f"{self.__class__.__name__}_{'sent' if self.sent_level_self_info else 'paragraph'}.pkl")
logging.info(f"saved to {pickle_file}. {message}")
print(f"saved to {pickle_file}. {message}")
with FileLock(pickle_file + ".lock", timeout=100):
with open(pickle_file, "wb") as f:
pickle.dump(self, f)
def self_info_mask(self, sents: List[str], self_info: List[float], mask_level):
# mask_level: mask sentences, phrases, or tokens
sents_after_mask = []
masked_sents = []
self.ppl_threshold = np.nanpercentile(self_info, self.mask_ratio * 100)
# if title is not None:
# with open(os.path.join(self.path, title+'_prob_token.tsv'), 'w', encoding='utf-8') as f:
# for token, info in zip(tokens, self_info):
# f.write(f"{token}\t{info}\n")
# with open(os.path.join(self.path, title+'_prob_sent.tsv'), 'w', encoding='utf-8') as f:
# for sent, info in zip(sents, sent_self_info):
# f.write(f"{sent}\n{info}\n\n")
for sent, info in zip(sents, self_info):
if info < self.ppl_threshold:
masked_sents.append(sent)
sents_after_mask.append(self.mask_a_sent(sent, mask_level))
else:
sents_after_mask.append(sent)
masked_context = " ".join(sents_after_mask) if mask_level == 'sent' else "".join(sents_after_mask)
return masked_context, masked_sents
def calculate_sent_self_info(self, context, tokens, self_info) -> List[Tuple[str, float]]:
sents = re.split(self.sent_tokenize_pattern, ''.join(tokens))
sents = [sents[0][:-1]] + [' ' + sent[:-1] for sent in sents[1:-1]] + [' ' + sents[-1]]
current_sent_idx = 0
current_position = 0
sent_self_info = [[] for _ in range(len(sents))]
start = 0
for idx, (token, info) in enumerate(zip(tokens, self_info)):
current_position += len(token)
if current_position >= len(sents[current_sent_idx]):
end = idx
# print(tokens[start:end+1], '^^', sents[current_sent_idx])
# print(current_position, len(sents[current_sent_idx]), current_sent_idx)
start = end + 1
sent_self_info[current_sent_idx].append(info)
current_position = current_position - len(sents[current_sent_idx])
current_sent_idx += 1
else:
# print(current_position)
if token == ' ':
continue
sent_self_info[current_sent_idx].append(info)
sent_self_info = [np.mean(info) for info in sent_self_info]
return sent_self_info
def random_mask_context(self, sents: List[str], level) -> str:
sents_after_mask = []
masked_sents = []
for sent in sents:
if random.random() < self.mask_ratio:
masked_sents.append(sent)
sents_after_mask.append(self.mask_a_sent(sent, level))
else:
sents_after_mask.append(sent)
masked_context = " ".join(sents_after_mask)
return masked_context, masked_sents
def mask_a_sent(self, sent, level):
if level == 'phrase':
return self.phrase_mask_token
elif level == 'sent':
if self.keep_leading_word:
leading_few_words = " ".join(word_tokenize(sent)[:self.num_lead_words]) + " "
else:
leading_few_words = ""
return leading_few_words + self.mask_token
elif level == 'token':
return ''
@classmethod
def from_checkpoint(cls, pickle_path, **kwargs):
with FileLock(pickle_path + ".lock", timeout=100):
with open(pickle_path, 'rb') as f:
manager = pickle.load(f)
for k,v in kwargs.items():
setattr(manager, k, v)
manager._prepare_self_info()
return manager
class ConversationContextManager(ArxivContextManager):
def load_articles(self, path):
self.articles = []
with open(os.path.join(path, 'conversation_2k.json'), 'r', encoding='utf-8') as f:
for line in f.readlines():
if len(self.articles) > self.num_articles:
break
conversation = json.loads(line)
conversation = self._parse_conversation(conversation)
article = self._build_article(conversation)
if article is not None and article.num_rounds >=4:
self.articles.append(article)
def _build_article(self, conversation: Conversation):
lines = []
for utterence in conversation.context:
line = f"{utterence[0]}: {utterence[1]}"
punt = line[-1]
if punt not in ['.', '!', '?']:
line += '.'
lines.append(line)
content = '\n'.join(lines)
if not self.varify_context_length(content):
return None
prompt = '\n'.join(lines[:-1])
last_response = conversation.context[-1][1]
article = ConversationArticle(text=content, entry_id=conversation.id, title='', sections=[content, last_response], num_rounds=len(conversation.context), context = conversation.context)
return article
def _parse_conversation(self, conversation):
id = conversation['id']
convs = []
for sent in conversation['conversations']:
role = sent['from']
if role != 'human':
bsobj = BeautifulSoup(sent['value'])
for tag_name in ['p', 'br', 'div', 'li', 'h1', 'h2', 'h3',]:
for tag in bsobj.find_all(tag_name):
if tag.string is not None:
tag.string.replace_with(tag.string + ' ')
value = bsobj.get_text()
else:
value = sent['value']
convs.append((role, value))
return Conversation(id, convs)
def _prepare_self_info(self):
logging.info("Preparing self information...")
articles = []
for article_idx, article in tqdm(enumerate(self.articles), desc="Preparing self information"):
if article.units is not None:
# means the LexicalUnits has been calculated
articles.append(article)
continue
sent_units = []
phrase_units = []
token_units = []
# here, we do not use the last utterance as part of the prompt. because it's the response
for role, utterance in article.context[:-1]:
sents = re.split(self.sent_tokenize_pattern, utterance)
sents = [sent.strip() for sent in sents if sent.strip()]
if len(sents) == 0:
continue
try:
units = self._lexical_unit(sents)
except Exception as e:
logging.error(f"Error in article {article_idx}: {e}")
traceback.print_exc()
articles = articles + self.articles[article_idx:]
self.articles = articles
self._check_point(f'Error _preparing_self_info {article_idx}: {e}')
exit(1)
sent_units.append(units[0].add_to_head(f' {role}: ', 100))
phrase_units.append(units[1].add_to_head(f' {role}: ', 100))
token_units.append(units[2].add_to_head(f' {role}: ', 100))
article.units = [
sum(sent_units),
sum(phrase_units),
sum(token_units),
]
articles.append(article)
self.articles = articles
self._check_point('Finished _preparing_self_info')
# def generate_context(self, mask_method):
# # self.conversations = self.conversations[:2]
# resulting_contexts = []
# for conversation in self.conversations:
# if mask_method == 'self-info-sent':
# masked_context, masked_sents = self.self_info_sent_mask(conversation)
# elif mask_method == 'Random':
# masked_context, masked_sents = self.random_mask_context(conversation.context)
# if not self.varify_context_length(masked_context):
# continue
# resulting_contexts.append(
# ArxivContext(text='', entry_id=conversation.id, context=masked_context, context_masked=True, masked_sents=masked_sents)
# )
# return resulting_contexts
# def random_mask_context(self, context):
# masked_context = ''
# masked_sents = []
# for sent in conversation.context:
# role = sent[0]
# value = sent[1]
# sents = re.split(self.sent_tokenize_pattern, value)
# masked_context += role + ": "
# for sent in sents:
# if random.random() < self.mask_ratio:
# if self.keep_leading_word:
# leading_few_words = " ".join(word_tokenize(sent)[:self.num_lead_words]) + " "
# else:
# leading_few_words = ""
# masked_sents.append(sent)
# masked_context += leading_few_words + self.mask_token
# else:
# masked_context += sent
# return masked_context, masked_sents
# def self_info_sent_mask(self, conversation: Conversation, output = False):
# convs = []
# sent_self_info = []
# masked_context = ''
# masked_sents = []
# f = open(os.path.join(self.path, f'{conversation.id}.txt'), 'w', encoding='utf-8')
# for sent in conversation.context:
# role = sent[0]
# value = sent[1]
# sents = re.split(self.sent_tokenize_pattern, value)
# sents = [sent.strip() for sent in sents if sent.strip()]
# utterences = []
# for sent in sents:
# if not self.varify_context_length(sent):
# return None, None
# tokens, self_info = get_self_information(sent)
# info = np.mean(self_info)
# utterences.append((sent, info))
# sent_self_info.append(info)
# f.write(f'{sent}\n{info}\n\n')
# convs.append((role, utterences))
# self.ppl_threshold = np.percentile(sent_self_info, self.mask_ratio * 100)
# for role, utterences in convs:
# masked_context += role + ': '
# for sent, info in utterences:
# if info < self.ppl_threshold:
# if self.keep_leading_word:
# leading_few_words = " ".join(word_tokenize(sent)[:self.num_lead_words]) + " "
# else:
# leading_few_words = ""
# masked_sents.append(sent)
# masked_context += leading_few_words + self.mask_token
# else:
# masked_context += sent
# f.close()
# return masked_context, masked_sents
class NewsContextManager(ArxivContextManager):
def __init__(
self,
*args,
**kwargs
):
self.ds_name = 'liyucheng/bbc_new_2303'
super().__init__(*args, **kwargs)
def load_articles(self, path):
ds = load_dataset(self.ds_name, split=f'train[:{self.num_articles}]')
self.articles = []
for article in ds:
title = article['title']
id_ = article['link']
content = article['content']
self.articles.append(
ArxivArticle(text=content, entry_id=id_, title=title, sections=[content])
)
logging.info(f"Finish preprocessing News articles. Loaded {len(self.articles)} documents.")
print(f"Finish preprocessing News articles. Loaded {len(self.articles)} documents.")
def beautify_context(self, context):
context = re.sub(r"\s+", " ", context)
return context
def get_self_information(text, num_retry = 5):
# text = text[:1000]
openai.api_key = os.environ["OPENAI_API_KEY"]
for _ in range(num_retry):
try:
r = openai.Completion.create(
model="curie",
prompt=f"<|endoftext|>{text}",
max_tokens=0,
temperature=0,
echo=True,
logprobs=0,
)
break
except Exception as e:
print(e)
time.sleep(1)
result = r['choices'][0]
tokens, logprobs = result["logprobs"]["tokens"][1:], result["logprobs"]["token_logprobs"][1:]
assert len(tokens) == len(logprobs), f"Expected {len(tokens)} logprobs, got {len(logprobs)}"
self_info = [ -logprob for logprob in logprobs]
# TODO: deal with the first delimiter
return tokens, self_info
if __name__ == "__main__":
context_path, = sys.argv[1:]
mask_type = "self-info-sent"
dataset_type = "arxiv"
dataset_manager = {
'arxiv': ArxivContextManager,
'conversations': ConversationContextManager,
}
context_manager = dataset_manager[dataset_type](context_path)
contexts = context_manager.generate_context(mask_type, mask_level='phrase')
print(contexts)
with open(f'{dataset_type}_contexts_{mask_type}.pkl', 'wb') as f:
pickle.dump(contexts, f)