DESCRIPTION

Package: BPCellsArray
Title: Using BPCells as a DelayedArray Backend
Version: 0.0.0.9000
Authors@R: 
    person("Yun", "Peng", , "yunyunp96@gmail.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0003-2801-3332"))
Description: Implements a DelayedArray backend for reading and
    writing arrays in the BPCells storage layout. The resulting 
    BPCells*Arrays are compatible with all Bioconductor
    pipelines that can accept DelayedArray instances.
BugReports: https://github.com/Yunuuuu/BPCellsArray
License: MIT + file LICENSE
Imports: 
    methods,
    BPCells (>= 0.2.0),
    DelayedArray (>= 0.28.0),
    SparseArray,
    Matrix,
    MatrixGenerics,
    BiocGenerics,
    cli,
    rlang (>= 1.1.0),
    S4Vectors,
    BiocSingular
Remotes: 
    bnprks/BPCells/r
Suggests: 
    SingleCellExperiment,
    BiocNeighbors,
    bluster,
    knitr,
    rmarkdown,
    roxygen2,
    RSpectra,
    S4Arrays,
    scater,
    scran,
    scuttle,
    testthat (>= 3.0.0)
Encoding: UTF-8
biocViews: Software, DataImport, DataRepresentation, Infrastructure
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Collate: 
    'BPCellsSeed.R'
    'Class-Delayed.R'
    'utils-BPCells.R'
    'Class-BPCellsMatrix.R'
    'Class-BPCellsSeed.R'
    'Class-Transformed.R'
    'IO-10xHDF5.R'
    'IO-AnnHDF5.R'
    'IO-Dir.R'
    'IO-HDF5.R'
    'IO-Mem.R'
    'Method-Arith.R'
    'Method-BindMatrix.R'
    'Method-Compare.R'
    'Method-Convert.R'
    'Method-Mask.R'
    'Method-Math.R'
    'Method-Multiply.R'
    'Method-RankTransform.R'
    'Method-RenameDims.R'
    'Method-Subassign.R'
    'Method-Subset.R'
    'Method-apply.R'
    'Method-axis.R'
    'Method-crossprod.R'
    'Method-internal.R'
    'Method-pmin.R'
    'Method-summarization.R'
    'Method-tcrossprod.R'
    'import-standalone-assert.R'
    'import-standalone-cli.R'
    'import-standalone-obj-type.R'
    'runSVD.R'
    'showtree.R'
    'utils-Rd.R'
    'utils-check.R'
    'utils.R'
    'zzz.R'
Config/testthat/edition: 3
VignetteBuilder: knitr