From e352da4b981d3391ce02da901c8665875b95ca06 Mon Sep 17 00:00:00 2001 From: Tatu Aalto Date: Tue, 7 Jun 2022 16:44:57 +0300 Subject: [PATCH 1/3] fix: Remove not used dependecies from pyproject.toml --- poetry.lock | 2690 ++++++++++++++++++++++++------------------------ pyproject.toml | 120 ++- 2 files changed, 1387 insertions(+), 1423 deletions(-) diff --git a/poetry.lock b/poetry.lock index 96ad1fd..2ab0ed5 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,1362 +1,1328 @@ -[[package]] -name = "atomicwrites" -version = "1.4.0" -description = "Atomic file writes." -category = "dev" -optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" - -[[package]] -name = "attrs" -version = "21.4.0" -description = "Classes Without Boilerplate" -category = "dev" -optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" - -[package.extras] -dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit", "cloudpickle"] -docs = ["furo", "sphinx", "zope.interface", "sphinx-notfound-page"] -tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "cloudpickle"] -tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "cloudpickle"] - -[[package]] -name = "black" -version = "22.3.0" -description = "The uncompromising code formatter." -category = "dev" -optional = false -python-versions = ">=3.6.2" - -[package.dependencies] -click = ">=8.0.0" -mypy-extensions = ">=0.4.3" -pathspec = ">=0.9.0" -platformdirs = ">=2" -tomli = {version = ">=1.1.0", markers = "python_version < \"3.11\""} -typing-extensions = {version = ">=3.10.0.0", markers = "python_version < \"3.10\""} - -[package.extras] -colorama = ["colorama (>=0.4.3)"] -d = ["aiohttp (>=3.7.4)"] -jupyter = ["ipython (>=7.8.0)", "tokenize-rt (>=3.2.0)"] -uvloop = ["uvloop (>=0.15.2)"] - -[[package]] -name = "bleach" -version = "5.0.0" -description = "An easy safelist-based HTML-sanitizing tool." -category = "dev" -optional = false -python-versions = ">=3.7" - -[package.dependencies] -six = ">=1.9.0" -webencodings = "*" - -[package.extras] -css = ["tinycss2 (>=1.1.0)"] -dev = ["pip-tools (==6.5.1)", "pytest (==7.1.1)", "flake8 (==4.0.1)", "tox (==3.24.5)", "sphinx (==4.3.2)", "twine (==4.0.0)", "wheel (==0.37.1)", "hashin (==0.17.0)", "black (==22.3.0)", "mypy (==0.942)"] - -[[package]] -name = "certifi" -version = "2022.5.18.1" -description = "Python package for providing Mozilla's CA Bundle." -category = "dev" -optional = false -python-versions = ">=3.6" - -[[package]] -name = "cffi" -version = "1.15.0" -description = "Foreign Function Interface for Python calling C code." -category = "dev" -optional = false -python-versions = "*" - -[package.dependencies] -pycparser = "*" - -[[package]] -name = "charset-normalizer" -version = "2.0.12" -description = "The Real First Universal Charset Detector. 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-classifiers = [ - "Development Status :: 3 - Alpha", - "Programming Language :: Python :: 3", - "Programming Language :: Python :: 3.8", - "Programming Language :: Python :: 3.9", - "Programming Language :: Python :: 3.10", - "License :: OSI Approved :: Apache Software License", - "Operating System :: OS Independent", - "Topic :: Software Development :: Testing", -] -packages = [ - { include = "failure_analysis", from="."} -] - -[tool.poetry.scripts] -failures-analysis = "failure_analysis.failure_analysis:main" - -[tool.poetry.urls] -"Change log" = "https://github.com/F-Secure/failures-analysis/blob/main/CHANGELOG.md" - -[tool.poetry.dependencies] -python = "^3.8" -jellyfish = "^0.9.0" -numpy = "^1.22.4" -pandas = "^1.4.2" -sklearn = "^0.0" -lxml = "^4.9.0" -python-Levenshtein = "^0.12.2" - -[tool.poetry.dev-dependencies] -pytest = "^7.1.2" -black = "^22.3.0" -isort = "^5.10.1" -invoke = "^1.7.1" -mypy = "^0.961" -flake8 = "^4.0.1" -python-semantic-release = "7.28.1" - -[build-system] 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:: Testing", +] +packages = [ + { include = "failure_analysis", from="."} +] + +[tool.poetry.scripts] +failures-analysis = "failure_analysis.failure_analysis:main" + +[tool.poetry.urls] +"Change log" = "https://github.com/F-Secure/failures-analysis/blob/main/CHANGELOG.md" + +[tool.poetry.dependencies] +python = "^3.8" +numpy = "^1.22.4" +pandas = "^1.4.2" +sklearn = "^0.0" +lxml = "^4.9.0" + +[tool.poetry.dev-dependencies] +pytest = "^7.1.2" +black = "^22.3.0" +isort = "^5.10.1" +invoke = "^1.7.1" +mypy = "^0.961" +flake8 = "^4.0.1" +python-semantic-release = "7.28.1" + +[build-system] +requires = ["poetry-core>=1.0.0"] +build-backend = "poetry.core.masonry.api" + +[tool.black] +line-length = 120 +target-version = ['py38'] + +[tool.semantic_release] +version_toml = [ + "pyproject.toml:tool.poetry.version", + "failure_analysis/__init__.py:__version__" +] +branch = "main" +build_command = "poetry build" From da4436309d8fd445a0e03809fe38546f215557cb Mon Sep 17 00:00:00 2001 From: Tatu Aalto Date: Tue, 7 Jun 2022 17:18:57 +0300 Subject: [PATCH 2/3] test: make test easier to understand --- failure_analysis/failure_analysis.py | 15 +-- poetry.lock | 98 ++++++++++++++++++- pyproject.toml | 1 + utest/test_similarity.py | 19 ++-- ...imilarity.test_console_output.approved.txt | 13 +++ ...similarity.test_finding_files.approved.txt | 12 +++ 6 files changed, 130 insertions(+), 28 deletions(-) create mode 100644 utest/test_similarity.test_console_output.approved.txt create mode 100644 utest/test_similarity.test_finding_files.approved.txt diff --git a/failure_analysis/failure_analysis.py b/failure_analysis/failure_analysis.py index a9d3742..f412df2 100644 --- a/failure_analysis/failure_analysis.py +++ b/failure_analysis/failure_analysis.py @@ -35,12 +35,6 @@ def parse_xml(path: Path): return failure, testname, filename, classname -def jaccard_similarity(list1, list2): - s1 = set(list1) - s2 = set(list2) - return float(len(s1.intersection(s2)) / len(s1.union(s2))) - - def cosine_sim_vectors(vec1, vec2): """Takes in 2 vectors and returns a cosine similiarity between two vectors.""" vec1 = vec1.reshape(1, -1) @@ -49,19 +43,14 @@ def cosine_sim_vectors(vec1, vec2): def score_failures(failures): - """takes in a list of tuples of failures and returns 5 lists of 5 different string similiarity algorithms. + """takes in a list of tuples of failures and returns a lists of cosine similarity. - sm_ratios, list of similiarity scores between two items in a tuple coss, a list of cosine similiarity scores between two items in a tuple - jaccards, a list of jaccard scores between two items in a tuple - jaros, a list of jaro scores between two items in a tuple - levens, a list of levenshtein ratio scores between two items in a tuple """ coss = [] for failure in failures: str1 = failure[0] str2 = failure[1] - vectorizer = CountVectorizer().fit_transform([str1, str2]) vectors = vectorizer.toarray() cos = cosine_sim_vectors(vectors[0], vectors[1]) @@ -83,8 +72,6 @@ def run(path: str): failures = list(itertools.permutations(failure, 2)) filenames = list(itertools.permutations(filename, 2)) classnames = list(itertools.permutations(classname, 2)) - - # sm_ratios, coss, jaccards, jaros, levens = score_failures(failures) coss = score_failures(failures) items = [ diff --git a/poetry.lock b/poetry.lock index 2ab0ed5..1421fe2 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,3 +1,34 @@ +[[package]] +name = "allpairspy" +version = "2.5.0" +description = "Pairwise test combinations generator" +category = "dev" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" + +[package.dependencies] +six = ">=1.10.0,<2.0.0" + +[package.extras] +build = ["twine", "wheel"] +release = ["releasecmd (>=0.0.18,<0.1.0)"] +test = ["pytest"] + +[[package]] +name = "approvaltests" +version = "5.2.0" +description = "Assertion/verification library to aid testing" +category = "dev" +optional = false +python-versions = ">=3.6.1" + 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= [ {file = "flake8-4.0.1-py2.py3-none-any.whl", hash = "sha256:479b1304f72536a55948cb40a32dce8bb0ffe3501e26eaf292c7e60eb5e0428d"}, {file = "flake8-4.0.1.tar.gz", hash = "sha256:806e034dda44114815e23c16ef92f95c91e4c71100ff52813adf7132a6ad870d"}, @@ -1186,6 +1275,9 @@ pyparsing = [ {file = "pyparsing-3.0.9-py3-none-any.whl", hash = "sha256:5026bae9a10eeaefb61dab2f09052b9f4307d44aee4eda64b309723d8d206bbc"}, {file = "pyparsing-3.0.9.tar.gz", hash = "sha256:2b020ecf7d21b687f219b71ecad3631f644a47f01403fa1d1036b0c6416d70fb"}, ] +pyperclip = [ + {file = "pyperclip-1.8.2.tar.gz", hash = "sha256:105254a8b04934f0bc84e9c24eb360a591aaf6535c9def5f29d92af107a9bf57"}, +] pytest = [ {file = "pytest-7.1.2-py3-none-any.whl", hash = "sha256:13d0e3ccfc2b6e26be000cb6568c832ba67ba32e719443bfe725814d3c42433c"}, {file = "pytest-7.1.2.tar.gz", hash = "sha256:a06a0425453864a270bc45e71f783330a7428defb4230fb5e6a731fde06ecd45"}, @@ -1290,6 +1382,10 @@ smmap = [ {file = "smmap-5.0.0-py3-none-any.whl", hash = "sha256:2aba19d6a040e78d8b09de5c57e96207b09ed71d8e55ce0959eeee6c8e190d94"}, {file = "smmap-5.0.0.tar.gz", hash = "sha256:c840e62059cd3be204b0c9c9f74be2c09d5648eddd4580d9314c3ecde0b30936"}, ] +soupsieve = [ + {file = "soupsieve-2.3.2.post1-py3-none-any.whl", hash = "sha256:3b2503d3c7084a42b1ebd08116e5f81aadfaea95863628c80a3b774a11b7c759"}, + {file = "soupsieve-2.3.2.post1.tar.gz", hash = "sha256:fc53893b3da2c33de295667a0e19f078c14bf86544af307354de5fcf12a3f30d"}, +] threadpoolctl = [ {file = "threadpoolctl-3.1.0-py3-none-any.whl", hash = "sha256:8b99adda265feb6773280df41eece7b2e6561b772d21ffd52e372f999024907b"}, {file = "threadpoolctl-3.1.0.tar.gz", hash = "sha256:a335baacfaa4400ae1f0d8e3a58d6674d2f8828e3716bb2802c44955ad391380"}, diff --git a/pyproject.toml b/pyproject.toml index ba8e5c8..2a82a7a 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -41,6 +41,7 @@ invoke = "^1.7.1" mypy = "^0.961" flake8 = "^4.0.1" python-semantic-release = "7.28.1" +approvaltests = "^5.2.0" [build-system] requires = ["poetry-core>=1.0.0"] diff --git a/utest/test_similarity.py b/utest/test_similarity.py index 0525074..2cfdada 100644 --- a/utest/test_similarity.py +++ b/utest/test_similarity.py @@ -6,8 +6,9 @@ import itertools import pytest +from approvaltests import verify -from failure_analysis.failure_analysis import jaccard_similarity, cosine_sim_vectors, score_failures, run +from failure_analysis.failure_analysis import cosine_sim_vectors, score_failures, run UTEST_ROOT = Path(__file__).resolve().parent XUNIT_FILES_DIR = UTEST_ROOT / "resources" @@ -34,14 +35,6 @@ def test_02(): """ # noqa: W291 -def test_jaccard_similarity(): - list1 = ["one", "two"] - list2 = ["one", "two"] - list3 = ["three", "four"] - assert jaccard_similarity(list1, list2) == 1 - assert jaccard_similarity(list1, list3) == 0 - - def test_cosine_sim_vectors(): vector1 = np.array([1, 1, 1]) vector2 = np.array([1, 1, 1]) @@ -63,9 +56,7 @@ def test_invalid_path(): def test_console_output(capsys): run(str(XUNIT_FILES_DIR)) captured = capsys.readouterr() - assert EXPECTED_OUTPUT_START in captured.out - assert EXPECTED_OUTPUT_END in captured.out - assert "test_me.py:6: AssertionError\n" in captured.out + verify(captured.out) def test_no_failures(capsys): @@ -83,7 +74,7 @@ def test_no_failures(capsys): assert captured.out == "NO FAILURES FOUND" -def test_finding_files(): +def test_finding_files(capsys): with tempfile.TemporaryDirectory() as temp_folder: folder_match_filter_patters = Path(temp_folder) / "xmlxml" folder_match_filter_patters.mkdir(parents=True) @@ -91,3 +82,5 @@ def test_finding_files(): shutil.copy(FAIL_01_FILE_PATH, folder_match_filter_patters / FAIL_01_FILE_NAME) shutil.copy(FAIL_02_FILE_PATH, folder_match_filter_patters / FAIL_02_FILE_NAME) run(temp_folder) + captured = capsys.readouterr() + verify(captured.out) diff --git a/utest/test_similarity.test_console_output.approved.txt b/utest/test_similarity.test_console_output.approved.txt new file mode 100644 index 0000000..12f2005 --- /dev/null +++ b/utest/test_similarity.test_console_output.approved.txt @@ -0,0 +1,13 @@ +============== FAILURE START ================= +def test_02(): +> assert False +E assert False + + +tests\test_me.py:6: AssertionError +============== FAILURE END ================= + cos +suitename2 testname2 filename2 +tests.test_me test_02 failing_01_.xml 1.0 + failing_02_.xml 1.0 + failing_03_.xml 1.0 diff --git a/utest/test_similarity.test_finding_files.approved.txt b/utest/test_similarity.test_finding_files.approved.txt new file mode 100644 index 0000000..7132c0a --- /dev/null +++ b/utest/test_similarity.test_finding_files.approved.txt @@ -0,0 +1,12 @@ +============== FAILURE START ================= +def test_02(): +> assert False +E assert False + + +tests\test_me.py:6: AssertionError +============== FAILURE END ================= + cos +suitename2 testname2 filename2 +tests.test_me test_02 failing_01_.xml 1.0 + failing_02_.xml 1.0 From e5e0a956a8f6813839628101fc7b229abb3ad502 Mon Sep 17 00:00:00 2001 From: Tatu Aalto Date: Tue, 7 Jun 2022 17:24:20 +0300 Subject: [PATCH 3/3] test: fix test import --- utest/test_similarity.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/utest/test_similarity.py b/utest/test_similarity.py index 2cfdada..1c07ce0 100644 --- a/utest/test_similarity.py +++ b/utest/test_similarity.py @@ -6,7 +6,7 @@ import itertools import pytest -from approvaltests import verify +from approvaltests import verify # type: ignore from failure_analysis.failure_analysis import cosine_sim_vectors, score_failures, run