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It looked like some files were treated with jupytext and others weren't. Consider keeping consistent in one method to convert notebook files to python modules. One way to do this may be to use a [`pyproject.toml` config for Jupytext](https://jupytext.readthedocs.io/en/latest/config.html#global-pairing).
jupytext converts .ipynb with R kernel into .py files which is an issue. I haven't found nbconvert to be compatible with precommit. Will have to pick one over the other...
Originally posted by @d33bs in #56 (comment)
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