Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

tripal pub skipping terms #11

Open
bradfordcondon opened this issue May 30, 2018 · 1 comment
Open

tripal pub skipping terms #11

bradfordcondon opened this issue May 30, 2018 · 1 comment

Comments

@bradfordcondon
Copy link
Contributor

the following terms get skipped when importing the no_ws @laceysanderson 's input file.

[site http://default] [TRIPAL ERROR] [TRIPAL_PUB] Cannot find term: 'Url'. Skipping.
WD tripal_pub: Cannot find term: 'Month'. Skipping.                                                                              [error]
[site http://default] [TRIPAL ERROR] [TRIPAL_PUB] Cannot find term: 'Month'. Skipping.
WD tripal_pub: Cannot find term: 'Doi'. Skipping.                                                                                [error]
[site http://default] [TRIPAL ERROR] [TRIPAL_PUB] Cannot find term: 'Doi'. Skipping.
WD tripal_pub: Cannot find term: 'Pmid'. Skipping.                                                                               [error]
[site http://default] [TRIPAL ERROR] [TRIPAL_PUB] Cannot find term: 'Pmid'. Skipping.

NOTE: publishing records is performed using a database transaction.
If the load fails or is terminated prematurely then the entire set of
is rolled back with no changes to the database

I'm assuming this is going to end up being a tripal_pub issue? I know that DOI at least should be a valid tag, probably needs to be to_upper or to_lower'd....

@laceysanderson
Copy link
Member

Yes, this is within tripal_pub_add_publication(). We could
A) change the parsed record to match formats we know tripal pub expects
or B) File an issue over on Tripal to request tripal_pub_add_publication() be more tolerant.

What are your thoughts?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants