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Document quality information such as read depth #13

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laceysanderson opened this issue Nov 27, 2019 · 1 comment
Closed

Document quality information such as read depth #13

laceysanderson opened this issue Nov 27, 2019 · 1 comment

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@laceysanderson
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This request came up in response to #12 as if you are searching for the data we have for a given germplasm you also need to know the amount and quality of that data. However, it will also be good feedback for the wetlab.

The plan to is make a TripalImporter for quality data which will have at least the following required columns:

  • Run name (must match existing record in lims)
  • Sample Name (must match sample name in specified run)
  • Sample Accession (could be looked up?)
  • Number of Bases
  • Number of Reads
  • Depth

As for display, the current thought is to make a separate table to display quality information on the run page with the preference being a tabbed interface between sample info and quality.

@laceysanderson
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PR Merged 🎉

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