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Error producing bam file for IRMA #9

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DrB-S opened this issue Mar 20, 2024 · 1 comment
Closed

Error producing bam file for IRMA #9

DrB-S opened this issue Mar 20, 2024 · 1 comment
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@DrB-S
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DrB-S commented Mar 20, 2024

Description of the bug

Missing output bam file during ASSEMBLY_TYPING_CLADE_VARIABLES:IRMA (TP20230307)

Command used and terminal output

nextflow.cli.Launcher - $> nextflow run -r v.2.0.0 UPHL-BioNGS/walkercreek -profile singularity --max_cpus 100 --input samplesheet_orig.csv --outdir 19March2024

Output: see nextflow.log

Relevant files

nextflow.log
errors.txt

System information

N E X T F L O W ~ version 23.10.1
Amazon
Singularity
Amazon Linux 2
2.0.0
@DrB-S DrB-S added the bug Something isn't working label Mar 20, 2024
@tives82
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tives82 commented Apr 10, 2024

This issue has been corrected with the latest release (v.2.0.1).

@tives82 tives82 closed this as completed Apr 10, 2024
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@tives82 @DrB-S