diff --git a/requirements-lock.txt b/requirements-lock.txt index 1a5ec1b..0a2e6f9 100644 --- a/requirements-lock.txt +++ b/requirements-lock.txt @@ -1,64 +1,10 @@ aiosqlite==0.16.0 -antlr4-python3-runtime==4.9.2 -attrs==21.2.0 -bmt==0.6.0 -cachetools==4.2.2 -certifi==2021.5.30 -CFGraph==0.2.1 -chardet==4.0.0 +bmt-lite-1.8.2==1.0.2 click==7.1.2 -Deprecated==1.2.12 -deprecation==2.1.0 fastapi==0.65.2 -frozendict==2.0.3 -graphviz==0.16 -greenlet==1.1.0 h11==0.12.0 -hbreader==0.9.1 -idna==2.10 -iniconfig==1.1.1 -isodate==0.6.0 -jsonasobj==1.3.1 -jsonasobj2==1.0.4 -jsonschema==3.2.0 -linkml==1.0.1 -linkml-model==1.0.0 -linkml-runtime==1.0.10 -lxml==4.6.3 -packaging==21.0 -parse==1.19.0 -pbr==5.6.0 -pluggy==0.13.1 -prefixcommons==0.1.9 -prologterms==0.0.6 -py==1.10.0 pydantic==1.8.2 -PyJSG==0.11.6 -PyLD==2.0.3 -PyLDmod==2.0.5 -pyparsing==2.4.7 -pyrsistent==0.18.0 -PyShEx==0.7.20 -PyShExC==0.8.3 -pytest==6.2.4 -python-dateutil==2.8.1 -PyYAML==5.4.1 -rdflib==5.0.0 -rdflib-jsonld==0.5.0 -rdflib-pyldmod-compat==0.1.1 reasoner-pydantic==1.1.2.1 -requests==2.25.1 -ShExJSG==0.7.1 -six==1.16.0 -sparqlslurper==0.4.1 -SPARQLWrapper==1.8.5 -SQLAlchemy==1.4.20 -starlette==0.13.6 -stringcase==1.2.0 -testfixtures==6.17.1 -toml==0.10.2 +starlette==0.14.2 typing-extensions==3.10.0.0 -urllib3==1.26.6 uvicorn==0.12.3 -watchdog==2.1.3 -wrapt==1.12.1 diff --git a/requirements.txt b/requirements.txt index bb43f0e..70313c8 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,6 +1,5 @@ aiosqlite==0.16.0 -bmt==0.6.0 -linkml-model==1.0.0 +bmt-lite-1.8.2==1.0.2 fastapi==0.65.2 reasoner-pydantic==1.1.2.1 uvicorn==0.12.3 diff --git a/simple_kp/util.py b/simple_kp/util.py index e1834de..4fdce71 100644 --- a/simple_kp/util.py +++ b/simple_kp/util.py @@ -3,9 +3,7 @@ from bmt import Toolkit -BMT = Toolkit( - schema="https://raw.githubusercontent.com/biolink/biolink-model/1.8.2/biolink-model.yaml", -) +BMT = Toolkit() def get_subcategories(category):