NCBIGene:6052 doesn't have a label, although it should

[gaurav]

NCBIGene:6052 doesn't have a label, but it does have one at https://www.ncbi.nlm.nih.gov/gene/?term=6052

It also has name and label information in gene_info.gz:

#tax_id GeneID  Symbol  LocusTag        Synonyms        dbXrefs chromosome      map_location    description     type_of_gene    Symbol_from_nomenclature_authority      Full_name_from_nomenclature_authority   Nomenclature_status     Other_designations      Modification_date       Feature_type
9606    6052    RNR1    -       -       MIM:180450|HGNC:HGNC:10082      13      13p12   RNA, ribosomal 45S cluster 1    other   RNR1    RNA, ribosomal 45S cluster 1    O       45S rDNA cluster 1|RNA, ribosomal 1|RNA, ribosomal cluster 1|Ribosomal RNA-1    20220508        -       

This appears to be because it is type other, which is skipped when generating label and synonym files:

https://github.com/TranslatorSRI/Babel/blob/f7ed8f0736c799c1389d3f5b0a2d045634da2e46/src/datahandlers/ncbigene.py#L60-L61

We should pick up a preferred label from OMIM, but we don't appear to use OMIM labels at all.

[gaurav]

I guess the logic is that since this is a "ribosomal 45S cluster", we don't want it show up as a gene at all. But we're pulling it in from OMIM: it shows up in babel_downloads/OMIM/mim2gene.txt:

180450	gene	6052	RNR1

So we should either:

1. Add OMIM labels so we can apply a label to this entry.
2. Include other entries from NCBIGene so this looks more like a Gene in NodeNorm.
3. Come up with some way to correctly classify this entry as a non-Gene thing based on OMIM information.

@cbizon Any thoughts? I'm considering just classifying this as "Non-urgent" to deal with later, but I don't know if non-gene OMIM entries are likely to show up in results, and therefore should be properly dealt with.