eb_hooks.py

# Hooks to customize how EasyBuild installs software in EESSI
# see https://docs.easybuild.io/en/latest/Hooks.html
import os
import re

from easybuild.easyblocks.generic.configuremake import obtain_config_guess
from easybuild.tools.build_log import EasyBuildError, print_msg
from easybuild.tools.config import build_option, update_build_option
from easybuild.tools.filetools import apply_regex_substitutions, copy_file, which
from easybuild.tools.run import run_cmd
from easybuild.tools.systemtools import AARCH64, POWER, X86_64, get_cpu_architecture, get_cpu_features
from easybuild.tools.toolchain.compiler import OPTARCH_GENERIC

EESSI_RPATH_OVERRIDE_ATTR = 'orig_rpath_override_dirs'


def get_eessi_envvar(eessi_envvar):
    """Get an EESSI environment variable from the environment"""

    eessi_envvar_value = os.getenv(eessi_envvar)
    if eessi_envvar_value is None:
        raise EasyBuildError("$%s is not defined!", eessi_envvar)

    return eessi_envvar_value


def get_rpath_override_dirs(software_name):
    # determine path to installations in software layer via $EESSI_SOFTWARE_PATH
    eessi_software_path = get_eessi_envvar('EESSI_SOFTWARE_PATH')

    # construct the rpath override directory stub
    rpath_injection_stub = os.path.join(
        # Make sure we are looking inside the `host_injections` directory
        eessi_software_path.replace('versions', 'host_injections', 1),
        # Add the subdirectory for the specific software
        'rpath_overrides',
        software_name,
        # We can't know the version, but this allows the use of a symlink
        # to facilitate version upgrades without removing files
        'system',
    )

    # Allow for libraries in lib or lib64
    rpath_injection_dirs = [os.path.join(rpath_injection_stub, x) for x in ('lib', 'lib64')]

    return rpath_injection_dirs


def parse_hook(ec, *args, **kwargs):
    """Main parse hook: trigger custom functions based on software name."""

    # determine path to Prefix installation in compat layer via $EPREFIX
    eprefix = get_eessi_envvar('EPREFIX')

    if ec.name in PARSE_HOOKS:
        PARSE_HOOKS[ec.name](ec, eprefix)


def pre_configure_hook(self, *args, **kwargs):
    """Main pre-configure hook: trigger custom functions based on software name."""

    if self.name in PRE_CONFIGURE_HOOKS:
        PRE_CONFIGURE_HOOKS[self.name](self, *args, **kwargs)


def pre_prepare_hook(self, *args, **kwargs):
    """Main pre-prepare hook: trigger custom functions."""

    # Check if we have an MPI family in the toolchain (returns None if there is not)
    mpi_family = self.toolchain.mpi_family()

    # Inject an RPATH override for MPI (if needed)
    if mpi_family:
        # Get list of override directories
        mpi_rpath_override_dirs = get_rpath_override_dirs(mpi_family)

        # update the relevant option (but keep the original value so we can reset it later)
        if hasattr(self, EESSI_RPATH_OVERRIDE_ATTR):
            raise EasyBuildError("'self' already has attribute %s! Can't use pre_prepare hook.",
                                 EESSI_RPATH_OVERRIDE_ATTR)

        setattr(self, EESSI_RPATH_OVERRIDE_ATTR, build_option('rpath_override_dirs'))
        if getattr(self, EESSI_RPATH_OVERRIDE_ATTR):
            # self.EESSI_RPATH_OVERRIDE_ATTR is (already) a colon separated string, let's make it a list
            orig_rpath_override_dirs = [getattr(self, EESSI_RPATH_OVERRIDE_ATTR)]
            rpath_override_dirs = ':'.join(orig_rpath_override_dirs + mpi_rpath_override_dirs)
        else:
            rpath_override_dirs = ':'.join(mpi_rpath_override_dirs)
        update_build_option('rpath_override_dirs', rpath_override_dirs)
        print_msg("Updated rpath_override_dirs (to allow overriding MPI family %s): %s",
                  mpi_family, rpath_override_dirs)


def gcc_postprepare(self, *args, **kwargs):
    """
    Post-configure hook for GCCcore:
    - copy RPATH wrapper script for linker commands to also have a wrapper in place with system type prefix like 'x86_64-pc-linux-gnu'
    """
    if self.name == 'GCCcore':
        config_guess = obtain_config_guess()
        system_type, _ = run_cmd(config_guess, log_all=True)
        cmd_prefix = '%s-' % system_type.strip()
        for cmd in ('ld', 'ld.gold', 'ld.bfd'):
            wrapper = which(cmd)
            self.log.info("Path to %s wrapper: %s" % (cmd, wrapper))
            wrapper_dir = os.path.dirname(wrapper)
            prefix_wrapper = os.path.join(wrapper_dir, cmd_prefix + cmd)
            copy_file(wrapper, prefix_wrapper)
            self.log.info("Path to %s wrapper with '%s' prefix: %s" % (cmd, cmd_prefix, which(prefix_wrapper)))

            # we need to tweak the copied wrapper script, so that:
            regex_subs = [
                # - CMD in the script is set to the command name without prefix, because EasyBuild's rpath_args.py
                #   script that is used by the wrapper script only checks for 'ld', 'ld.gold', etc.
                #   when checking whether or not to use -Wl
                ('^CMD=.*', 'CMD=%s' % cmd),
                # - the path to the correct actual binary is logged and called
                ('/%s ' % cmd, '/%s ' % (cmd_prefix + cmd)),
            ]
            apply_regex_substitutions(prefix_wrapper, regex_subs)
    else:
        raise EasyBuildError("GCCcore-specific hook triggered for non-GCCcore easyconfig?!")

def post_prepare_hook(self, *args, **kwargs):
    """Main post-prepare hook: trigger custom functions."""

    if hasattr(self, EESSI_RPATH_OVERRIDE_ATTR):
        # Reset the value of 'rpath_override_dirs' now that we are finished with it
        update_build_option('rpath_override_dirs', getattr(self, EESSI_RPATH_OVERRIDE_ATTR))
        print_msg("Resetting rpath_override_dirs to original value: %s", getattr(self, EESSI_RPATH_OVERRIDE_ATTR))
        delattr(self, EESSI_RPATH_OVERRIDE_ATTR)

    if self.name in POST_PREPARE_HOOKS:
        POST_PREPARE_HOOKS[self.name](self, *args, **kwargs)


def cgal_toolchainopts_precise(ec, eprefix):
    """Enable 'precise' rather than 'strict' toolchain option for CGAL on POWER."""
    if ec.name == 'CGAL':
        if get_cpu_architecture() == POWER:
            # 'strict' implies '-mieee-fp', which is not supported on POWER
            # see https://github.com/easybuilders/easybuild-framework/issues/2077
            ec['toolchainopts']['strict'] = False
            ec['toolchainopts']['precise'] = True
            print_msg("Tweaked toochainopts for %s: %s", ec.name, ec['toolchainopts'])
    else:
        raise EasyBuildError("CGAL-specific hook triggered for non-CGAL easyconfig?!")


def fontconfig_add_fonts(ec, eprefix):
    """Inject --with-add-fonts configure option for fontconfig."""
    if ec.name == 'fontconfig':
        # make fontconfig aware of fonts included with compat layer
        with_add_fonts = '--with-add-fonts=%s' % os.path.join(eprefix, 'usr', 'share', 'fonts')
        ec.update('configopts', with_add_fonts)
        print_msg("Added '%s' configure option for %s", with_add_fonts, ec.name)
    else:
        raise EasyBuildError("fontconfig-specific hook triggered for non-fontconfig easyconfig?!")


def ucx_eprefix(ec, eprefix):
    """Make UCX aware of compatibility layer via additional configuration options."""
    if ec.name == 'UCX':
        ec.update('configopts', '--with-sysroot=%s' % eprefix)
        ec.update('configopts', '--with-rdmacm=%s' % os.path.join(eprefix, 'usr'))
        print_msg("Using custom configure options for %s: %s", ec.name, ec['configopts'])
    else:
        raise EasyBuildError("UCX-specific hook triggered for non-UCX easyconfig?!")


def pre_configure_hook(self, *args, **kwargs):
    """Main pre-configure hook: trigger custom functions based on software name."""
    if self.name in PRE_CONFIGURE_HOOKS:
        PRE_CONFIGURE_HOOKS[self.name](self, *args, **kwargs)


def libfabric_disable_psm3_x86_64_generic(self, *args, **kwargs):
    """Add --disable-psm3 to libfabric configure options when building with --optarch=GENERIC on x86_64."""
    if self.name == 'libfabric':
        if get_cpu_architecture() == X86_64:
            generic = build_option('optarch') == OPTARCH_GENERIC
            no_avx = 'avx' not in get_cpu_features()
            if generic or no_avx:
                self.cfg.update('configopts', '--disable-psm3')
                print_msg("Using custom configure options for %s: %s", self.name, self.cfg['configopts'])
    else:
        raise EasyBuildError("libfabric-specific hook triggered for non-libfabric easyconfig?!")


def metabat_preconfigure(self, *args, **kwargs):
    """
    Pre-configure hook for MetaBAT:
    - take into account that zlib is a filtered dependency,
      and that there's no libz.a in the EESSI compat layer
    """
    if self.name == 'MetaBAT':
        configopts = self.cfg['configopts']
        regex = re.compile(r"\$EBROOTZLIB/lib/libz.a")
        self.cfg['configopts'] = regex.sub('$EPREFIX/usr/lib64/libz.so', configopts)
    else:
        raise EasyBuildError("MetaBAT-specific hook triggered for non-MetaBAT easyconfig?!")


def wrf_preconfigure(self, *args, **kwargs):
    """
    Pre-configure hook for WRF:
    - patch arch/configure_new.defaults so building WRF with foss toolchain works on aarch64
    """
    if self.name == 'WRF':
        if get_cpu_architecture() == AARCH64:
            pattern = "Linux x86_64 ppc64le, gfortran"
            repl = "Linux x86_64 aarch64 ppc64le, gfortran"
            self.cfg.update('preconfigopts', "sed -i 's/%s/%s/g' arch/configure_new.defaults && " % (pattern, repl))
            print_msg("Using custom preconfigopts for %s: %s", self.name, self.cfg['preconfigopts'])
    else:
        raise EasyBuildError("WRF-specific hook triggered for non-WRF easyconfig?!")


PARSE_HOOKS = {
    'CGAL': cgal_toolchainopts_precise,
    'fontconfig': fontconfig_add_fonts,
    'UCX': ucx_eprefix,
}

POST_PREPARE_HOOKS = {
    'GCCcore': gcc_postprepare,
}

PRE_CONFIGURE_HOOKS = {
    'libfabric': libfabric_disable_psm3_x86_64_generic,
    'MetaBAT': metabat_preconfigure,
    'WRF': wrf_preconfigure,
}