Dockerfile

FROM quay.io/uninett/jupyterhub-singleuser:20191012-5691f5c

MAINTAINER Anne Fouilloux <annefou@geo.uio.no>

# Install packages
USER root
RUN apt-get update && apt-get install -y vim

# Install requirements for Python 3
ADD jupyterhub_environment.yml jupyterhub_environment.yml

RUN conda env create -f jupyterhub_environment.yml

RUN source activate esmvaltool && \
    /opt/conda/bin/ipython kernel install --user --name esmvaltool && \
    /opt/conda/bin/python -m ipykernel install --user --name=esmvaltool && \
    /opt/conda/bin/jupyter labextension install @jupyterlab/hub-extension \
                           @jupyter-widgets/jupyterlab-manager && \
    /opt/conda/bin/jupyter labextension install jupyterlab-datawidgets && \
    /opt/conda/bin/jupyter labextension install @jupyter-widgets/jupyterlab-sidecar && \
    /opt/conda/bin/jupyter labextension install @pyviz/jupyterlab_pyviz \
                           jupyter-leaflet

# Install requirements for cesm 
ADD cesm_environment.yml cesm_environment.yml

# Python packages
RUN conda env create -f cesm_environment.yml && conda clean -yt
RUN ["/bin/bash" , "-c", ". /opt/conda/etc/profile.d/conda.sh && \
    conda activate cesm && \
    python -m pip install ipykernel && \
    ipython kernel install --user --name cesm && \
    python -m ipykernel install --user --name=cesm && \
    jupyter labextension install @jupyterlab/hub-extension \
            @jupyter-widgets/jupyterlab-manager && \
    jupyter labextension install jupyterlab-datawidgets && \
    conda deactivate && \
    conda init bash"]

# Fix hub failure
RUN fix-permissions $HOME

# Install other packages
USER notebook