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validate_submissions_v3.yml
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name: Validate Submissions V3
on:
pull_request_target:
branches:
- main
paths:
- 'model-output/**'
- 'model-metadata/*'
- '!**README**'
- '!**.md'
- '!**.MD'
jobs:
validate-submission_job:
runs-on: ubuntu-latest
outputs:
changed_files: ${{ steps.get_changed_files.outputs.all_changed_files }}
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
PR_NUMBER: ${{ github.event.pull_request.number }}
steps:
- name: Checkout repository
uses: actions/checkout@v3
with:
ref: ${{ github.event.pull_request.head.sha }}
fetch-depth: 1
# Checkout the python tools repo
# -------------------------------------------
- name: checkout python tools repo
uses: actions/checkout@v3
with:
repository: 'european-modelling-hubs/hub-tools'
ref: 'main'
path: './tools/'
# Get changes from pull request for later use
# --------------------------------------------
- name: Get changes
id: get_changed_files
uses: tj-actions/changed-files@v41
# DEBUG ONLY
- name: List all changed files
run: |
for file in ${{ steps.get_changed_files.outputs.all_changed_files }}; do
echo "$file was changed"
done
# TEST ONLY -----------------------------------
- uses: r-lib/actions/setup-r@v2
with:
install-r: false
use-public-rspm: true
# Install System dependencies
- name: Install system dependencies
run: |
sudo apt-get update
sudo apt-get install libcurl4-openssl-dev libv8-dev
# Install hubValidations package from HubVerse
- uses: r-lib/actions/setup-r-dependencies@v2
with:
packages: hubverse-org/hubValidations, any::sessioninfo
# Run Pyton code
# -------------------------
- uses: actions/setup-python@v4
with:
python-version: '3.10'
- run: pip install pandas pyarrow
# Validate data submission
- name: Run validations
env:
files: ${{ steps.get_changed_files.outputs.all_changed_files }}
PR_NUMBER: ${{ github.event.number }}
run: |
library("hubValidations")
v <- hubValidations::validate_pr(
gh_repo = Sys.getenv("GITHUB_REPOSITORY"),
pr_number = Sys.getenv("PR_NUMBER"),
skip_submit_window_check = FALSE,
derived_task_ids = c("target_end_date", "pop_group")
)
hubValidations::check_for_errors(v, verbose = TRUE)
shell: Rscript {0}
- name: Validate derived task ids
env:
input_list: ${{ steps.get_changed_files.outputs.all_changed_files }}
run: |
python ./tools/code/validate_derived_task_ids.py
# Eventually comment on it
- name: Comment PR
uses: thollander/actions-comment-pull-request@v2
with:
message: |
All validation checks completed successfully.
pr_number: ${{ github.event.pull_request.number }}
# Approve pull request
# ---------------------------
- name: Approve Pull Request
uses: juliangruber/[email protected]
with:
github-token: ${{ secrets.GITHUB_TOKEN }}
number: ${{ github.event.pull_request.number }}
# And then merge it
# ---------------------------
- name: Merge the pull request
id: merge_pr
run: |
echo ">>> Merging PR URL: ${{ github.event.pull_request.html_url }}"
gh pr merge --auto --squash $PR_URL
env:
PR_URL: ${{ github.event.pull_request.html_url }}
GH_TOKEN: ${{ github.token }}
call-persisting-wf:
needs: validate-submission_job
uses: Testing-Forecast-Actions/ScenarioModellingHub/.github/workflows/persist_changes.yml@main
with:
changes-list: ${{ needs.validate-submission_job.outputs.changed_files }}
secrets:
envPAT: ${{ secrets.GITHUB_TOKEN }}