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@haowang-bioinfo haowang-bioinfo released this 25 Feb 09:05
v2.2.0
a4602fe
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Main improvements in this release:

  • fix:
    • getKEGGModelForOrganism various bug fixes on HMMs file extraction (PR #203), argument optimization (PR #207, #209)
    • ravenCobraWrapper now regenerates comps field if missing in a COBRA model (PR #200)
    • getBlastFromExcel bug fix reported in #180 (PR #201)
    • addTransport misc bugfixes (PR #195)
    • FSEOF differiciate missing or empty subSystems elements, standardizeGrRules output rxn ids instead of index (PR #194)
  • feature:
    • randomSampling can output the reactions that are not part of loops for subsequent runs (PR #197)
    • specifying prefix, retaining order of reactions and informative transport/exchange reaction names now supported when adding new reactions (PR #189)
    • improved features and new function added for tINIT reconstructions (PR #170)
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