Main tool KrakenTools
Code repository: https://github.com/jenniferlu717/KrakenTools
Additional tools:
- python 3.10.12
- biopython 1.84
- pandas 2.2.3
- numpy 2.1.2
Basic information on how to use this tool:
- executable: various python scripts
- help: most scripts have -h options
- version: most scripts do not have versioning information
- description: "KrakenTools is a suite of scripts to be used alongside the Kraken, KrakenUniq, Kraken 2, or Bracken programs. These scripts are designed to help Kraken users with downstream analysis of Kraken results."
Additional information:
Full documentation: https://github.com/jenniferlu717/KrakenTools
python3 /KrakenTools/extract_kraken_reads.py -h