update_freyja.yml

##### ------------------------------------------------------------------------------------------------ #####
##### This caller workflow tests, builds, and pushes the image to Docker Hub and Quay using the most   #####
##### recent version of Freyja and downloading the most recent variant information.                    #####
##### It takes no manual input.                                                                        #####
##### ------------------------------------------------------------------------------------------------ #####

name: Update Freyja

on: 
  workflow_dispatch:
  schedule:
    - cron: '30 7 * * 1'

run-name: Updating Freyja

jobs:
  update:
    runs-on: ubuntu-latest
    steps:    
      - name: pull repo
        uses: actions/checkout@v4     

      - name: set freyja version
        id: latest_version
        run: |
          version=1.5.2
          echo "version=$version" >> $GITHUB_OUTPUT 
          
          file=freyja/$version/Dockerfile
          ls $file
          echo "file=$file" >> $GITHUB_OUTPUT

      - name: set up docker buildx
        id: buildx
        uses: docker/setup-buildx-action@v3

      - name: build to test
        id: docker_build_to_test
        uses: docker/build-push-action@v5
        with:
          file: ${{ steps.latest_version.outputs.file }}
          target: test
          load: true
          push: false
          tags: freyja:update

      - name: get freyja database version
        id: db_version
        run: |
          docker run freyja:update freyja demix --version
          version=$(docker run freyja:update freyja demix --version | grep . | grep -v Barcode | head -n 1)
          echo "the latest version is $version"
          echo "version=$version" >> $GITHUB_OUTPUT

      - name: Get current date
        id: date
        run: |
          date=$(date '+%Y-%m-%d')
          echo "the date is $date"
          echo "date=$date" >> $GITHUB_OUTPUT
      
      - name: Login to DockerHub
        uses: docker/login-action@v3
        with:
          username: ${{ secrets.DOCKER_HUB_USERNAME }}
          password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }}

      - name: Login to Quay
        uses: docker/login-action@v3
        with:
          registry: quay.io
          username: ${{ secrets.QUAY_USERNAME }}
          password: ${{ secrets.QUAY_ROBOT_TOKEN }}

      - name: Build and push Dockerfile
        id: docker_build_and_push
        uses: docker/build-push-action@v5
        with:
          file: ${{ steps.latest_version.outputs.file }}
          target: app
          push: true
          tags: |
            staphb/freyja:${{ steps.latest_version.outputs.version }}-${{ steps.db_version.outputs.version }}-${{ steps.date.outputs.date }}
            staphb/freyja:latest
            quay.io/staphb/freyja:${{ steps.latest_version.outputs.version }}-${{ steps.db_version.outputs.version }}-${{ steps.date.outputs.date }}
            quay.io/staphb/freyja:latest

      - name: Image digest
        run: echo ${{ steps.docker_build_user_defined_tag.outputs.digest }}