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Kaptive

Main tool: Kaptive

Example Usage

# K locus, A. baumannii
kaptive.py -a assembly.fasta -k /kaptive/reference_database/Acinetobacter_baumannii_k_locus_primary_reference.gbk
# O locus, A. baumannii
kaptive.py -a assembly.fasta -k /kaptive/reference_database/Acinetobacter_baumannii_OC_locus_primary_reference.gbk

# K locus, K. pneumoniae
kaptive.py -a assembly.fasta -k /kaptive/reference_database/Klebsiella_k_locus_primary_reference.gbk
# O locus, K. pneumoniae
kaptive.py -a assembly.fasta -k /kaptive/reference_database/Klebsiella_o_locus_primary_reference.gbk