Automatic curation with metrics #5106
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
name: Testing deepinterpolation | |
on: | |
pull_request: | |
types: [synchronize, opened, reopened] | |
branches: | |
- main | |
concurrency: # Cancel previous workflows on the same pull request | |
group: ${{ github.workflow }}-${{ github.ref }} | |
cancel-in-progress: true | |
jobs: | |
build-and-test: | |
name: Test on ${{ matrix.os }} OS | |
runs-on: ${{ matrix.os }} | |
strategy: | |
fail-fast: false | |
matrix: | |
os: ["ubuntu-latest"] | |
steps: | |
- uses: actions/checkout@v4 | |
- uses: actions/setup-python@v5 | |
with: | |
python-version: '3.9' | |
- name: Get changed files | |
id: changed-files | |
uses: tj-actions/changed-files@v41 | |
- name: Deepinteprolation changes | |
id: modules-changed | |
run: | | |
for file in ${{ steps.changed-files.outputs.all_changed_files }}; do | |
if [[ $file == *"/deepinterpolation/"* ]]; then | |
echo "DeepInterpolation changed" | |
echo "DEEPINTERPOLATION_CHANGED=true" >> $GITHUB_OUTPUT | |
fi | |
done | |
- name: Install dependencies | |
if: ${{ steps.modules-changed.outputs.DEEPINTERPOLATION_CHANGED == 'true' }} | |
run: | | |
python -m pip install -U pip # Official recommended way | |
# install deepinteprolation | |
pip install tensorflow==2.7.0 | |
pip install deepinterpolation@git+https://github.com/AllenInstitute/deepinterpolation.git | |
pip install protobuf==3.20.* | |
pip install -e .[full,test_core] | |
- name: Test DeepInterpolation with pytest | |
if: ${{ steps.modules-changed.outputs.DEEPINTERPOLATION_CHANGED == 'true' }} | |
run: | | |
pytest -v src/spikeinterface/preprocessing/deepinterpolation | |
shell: bash # Necessary for pipeline to work on windows |