patch release to pin rjson version and update of installation instruc…

…tion

DESCRIPTION

@@ -1,8 +1,8 @@
 Package: synapser
 Type: Package
 Title: R Language Bindings for Synapse API
-Version: 2.1.0
-Date: 2024-07-31
+Version: 2.1.1
+Date: 2024-08-20
 Authors@R: c(
   person("Dan", "Lu", role = c("aut", "cre"), email = "[email protected]"),
   person("Tom", "Yu", role = c("aut"), email = "[email protected]"),

Dockerfile

@@ -9,4 +9,4 @@ RUN apt-get update && \
     apt-get clean && \
     rm -rf /var/lib/apt/lists/*
 
-RUN R -e "install.packages('synapser', repos=c('http://ran.synapse.org', 'http://cran.fhcrc.org'))"
+RUN R -e "install.packages('synapser', repos=c('http://ran.synapse.org', 'https://cloud.r-project.org'))"

Dockerfile.rstudio

@@ -13,6 +13,6 @@ RUN apt-get update && \
 # Must install synapser as rstudio since we are relying on
 # the rstudio user to login
 USER rstudio
-RUN R -e "install.packages('synapser', repos=c('http://ran.synapse.org', 'http://cran.fhcrc.org'))"
+RUN R -e "install.packages('synapser', repos=c('http://ran.synapse.org', 'https://cloud.r-project.org'))"
 # when starting the container, it must run as root
 USER root

NEWS.md

@@ -1,3 +1,8 @@
+## synapser 2.1.1
+
+### Improvements
+* Pinned `rjson` package version to 0.2.21 to support R versions older than 4.4.0. 
+
 ## synapser 2.1.0
 
 ### Improvements

README.Rmd

@@ -47,13 +47,13 @@ adding the [Sage Bionetworks R Archive Network (RAN)](http://ran.synapse.org/) t
 repository list, e.g.:
 
 ```{r, eval=F}
-install.packages("synapser", repos=c("http://ran.synapse.org", "http://cran.fhcrc.org"))
+install.packages("synapser", repos=c("http://ran.synapse.org", "https://cloud.r-project.org"))
 ```
 
 Alternatively, edit your ~/.Rprofile and configure your default repositories:
 
 ```{r, eval=F}
-options(repos=c("http://ran.synapse.org", "http://cran.fhcrc.org"))
+options(repos=c("http://ran.synapse.org", "https://cloud.r-project.org"))
 ```
 
 after which you may run install.packages without specifying the repositories:

README.md

@@ -38,14 +38,14 @@ repository list, e.g.:
 
 
 ```r
-install.packages("synapser", repos=c("http://ran.synapse.org", "http://cran.fhcrc.org"))
+install.packages("synapser", repos=c("http://ran.synapse.org", "https://cloud.r-project.org"))
 ```
 
 Alternatively, edit your ~/.Rprofile and configure your default repositories:
 
 
 ```r
-options(repos=c("http://ran.synapse.org", "http://cran.fhcrc.org"))
+options(repos=c("http://ran.synapse.org", "https://cloud.r-project.org"))
 ```
 
 after which you may run install.packages without specifying the repositories: