README.md

Private-Edit-Distance-Approximation

Link to the paper: http://www.cs.umd.edu/~wangxiao/papers/ped.pdf

Compilation and Setup:

1.Get the code

git clone [email protected]:SPQ-EditDistance/code.git

cd code

git submodule init && git submodule update

2.Compile and preprocess data

./compile.sh

mkdir processed

java -cp bin/ offline.DataPreprocessor listOfGenome processed/

Run the protocols

3.Run Protocols

./run.py gen ptcl1 & ./run.py eva ptcl1

or

./run.py gen ptcl2 & ./run.py eva ptcl2

4.Try to change parameters in Conf.conf and rerun

More data can be obtained from PGP project: http://www.personalgenomes.org/ Certains genome files has slightly different format and may need slightly changes on preprocessing code.

To run over internet, update the address in Conf.conf to generator's ip address. Make sure each party has their own files.

Question about the code?

please email me at wangxiao (aT) cs (Dot) umd (dOt) edu