Placing the calculated unfolded state energy

[MuhammadAttaElhamouly]

These documentations using_ncaas_protein_peptide_interface_design and unfolded_state_energy_calculator stating the same directory scoring/score_functions/unfolded/unfolded_state_residue_energies_mm_std , to place the calculated unfolded state energy.

I have done that, but because I need to use the Ref2015 energy function, it seems that the Unfolded energy is not calculated, unfolded_state_residue_energies_mm_std file isn't recalled to calculate. The Unfolded energy is one fixed value for all output.

I used the option -unfolded_energies_file inputs/unfolded_mm_std to be able to use it.

How to apply the unfolded energy for the NCAA only, not for the whole output, and how I can precisely use the Ref2015 energy function along with the unfolded state energy? Also, do I need to reweight the energy function due to this use, and if I need to do so, which weights I can use?

Note: Unfolded weight is different and ranging -0.9 to 1 according to different weights.