-
Notifications
You must be signed in to change notification settings - Fork 70
/
.gitmodules
339 lines (336 loc) · 15.3 KB
/
.gitmodules
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
# Most of these are listed as relative paths to allow for https/ssh matching with the primary Rosetta repo
# But we do explicitly specify RosettaCommons, to allow things to work for forks
############################
# External Modules
############################
[submodule "source/external/msgpack/msgpack-c.upstream"]
path = source/external/msgpack/msgpack-c.upstream
url = https://github.com/msgpack/msgpack-c.git
[submodule "source/external/c-cmaes/c-cmaes"]
path = source/external/c-cmaes/c-cmaes
url = https://github.com/CMA-ES/c-cmaes.git
[submodule "source/external/libzmq"]
path = source/external/libzmq
url = ../../RosettaCommons/libzmq.git
[submodule "source/external/mmtf/mmtf-cpp"]
path = source/external/mmtf/mmtf-cpp
url = ../../RosettaCommons/mmtf-cpp.git
[submodule "source/external/rdkit/rdkit.upstream"]
path = source/external/rdkit/rdkit.upstream
url = ../../RosettaCommons/rdkit.git
[submodule "source/external/bcl"]
path = source/external/bcl
url = https://github.com/RosettaCommons/bcl_rosetta
branch = bcl_rosetta
############################
# Boost Modules
############################
# Rosetta forks
[submodule "source/external/boost_submod/integer"]
path = source/external/boost_submod/integer
url = https://github.com/RosettaCommons/boost_integer.git
[submodule "source/external/boost_submod/lexical_cast"]
path = source/external/boost_submod/lexical_cast
url = https://github.com/RosettaCommons/boost_lexical_cast.git
[submodule "source/external/boost_submod/multi_index"]
path = source/external/boost_submod/multi_index
url = https://github.com/RosettaCommons/boost_multi_index.git
# Original boost modules
[submodule "source/external/boost_submod/accumulators"]
path = source/external/boost_submod/accumulators
url = https://github.com/boostorg/accumulators.git
[submodule "source/external/boost_submod/algorithm"]
path = source/external/boost_submod/algorithm
url = https://github.com/boostorg/algorithm.git
[submodule "source/external/boost_submod/any"]
path = source/external/boost_submod/any
url = https://github.com/boostorg/any.git
[submodule "source/external/boost_submod/array"]
path = source/external/boost_submod/array
url = https://github.com/boostorg/array.git
[submodule "source/external/boost_submod/assert"]
path = source/external/boost_submod/assert
url = https://github.com/boostorg/assert.git
[submodule "source/external/boost_submod/assign"]
path = source/external/boost_submod/assign
url = https://github.com/boostorg/assign.git
[submodule "source/external/boost_submod/atomic"]
path = source/external/boost_submod/atomic
url = https://github.com/boostorg/atomic.git
[submodule "source/external/boost_submod/bimap"]
path = source/external/boost_submod/bimap
url = https://github.com/boostorg/bimap.git
[submodule "source/external/boost_submod/bind"]
path = source/external/boost_submod/bind
url = https://github.com/boostorg/bind.git
[submodule "source/external/boost_submod/chrono"]
path = source/external/boost_submod/chrono
url = https://github.com/boostorg/chrono.git
[submodule "source/external/boost_submod/circular_buffer"]
path = source/external/boost_submod/circular_buffer
url = https://github.com/boostorg/circular_buffer.git
[submodule "source/external/boost_submod/compute"]
path = source/external/boost_submod/compute
url = https://github.com/boostorg/compute.git
[submodule "source/external/boost_submod/concept_check"]
path = source/external/boost_submod/concept_check
url = https://github.com/boostorg/concept_check.git
[submodule "source/external/boost_submod/config"]
path = source/external/boost_submod/config
url = https://github.com/boostorg/config.git
[submodule "source/external/boost_submod/container"]
path = source/external/boost_submod/container
url = https://github.com/boostorg/container.git
[submodule "source/external/boost_submod/container_hash"]
path = source/external/boost_submod/container_hash
url = https://github.com/boostorg/container_hash.git
[submodule "source/external/boost_submod/conversion"]
path = source/external/boost_submod/conversion
url = https://github.com/boostorg/conversion.git
[submodule "source/external/boost_submod/core"]
path = source/external/boost_submod/core
url = https://github.com/boostorg/core.git
[submodule "source/external/boost_submod/date_time"]
path = source/external/boost_submod/date_time
url = https://github.com/boostorg/date_time.git
[submodule "source/external/boost_submod/detail"]
path = source/external/boost_submod/detail
url = https://github.com/boostorg/detail.git
[submodule "source/external/boost_submod/dynamic_bitset"]
path = source/external/boost_submod/dynamic_bitset
url = https://github.com/boostorg/dynamic_bitset.git
[submodule "source/external/boost_submod/endian"]
path = source/external/boost_submod/endian
url = https://github.com/boostorg/endian.git
[submodule "source/external/boost_submod/exception"]
path = source/external/boost_submod/exception
url = https://github.com/boostorg/exception.git
[submodule "source/external/boost_submod/filesystem"]
path = source/external/boost_submod/filesystem
url = https://github.com/boostorg/filesystem.git
[submodule "source/external/boost_submod/foreach"]
path = source/external/boost_submod/foreach
url = https://github.com/boostorg/foreach.git
[submodule "source/external/boost_submod/format"]
path = source/external/boost_submod/format
url = https://github.com/boostorg/format.git
[submodule "source/external/boost_submod/function"]
path = source/external/boost_submod/function
url = https://github.com/boostorg/function.git
[submodule "source/external/boost_submod/functional"]
path = source/external/boost_submod/functional
url = https://github.com/boostorg/functional.git
[submodule "source/external/boost_submod/function_types"]
path = source/external/boost_submod/function_types
url = https://github.com/boostorg/function_types.git
[submodule "source/external/boost_submod/fusion"]
path = source/external/boost_submod/fusion
url = https://github.com/boostorg/fusion.git
[submodule "source/external/boost_submod/geometry"]
path = source/external/boost_submod/geometry
url = https://github.com/boostorg/geometry.git
[submodule "source/external/boost_submod/graph"]
path = source/external/boost_submod/graph
url = https://github.com/boostorg/graph.git
[submodule "source/external/boost_submod/interval"]
path = source/external/boost_submod/interval
url = https://github.com/boostorg/interval.git
[submodule "source/external/boost_submod/intrusive"]
path = source/external/boost_submod/intrusive
url = https://github.com/boostorg/intrusive.git
[submodule "source/external/boost_submod/io"]
path = source/external/boost_submod/io
url = https://github.com/boostorg/io.git
[submodule "source/external/boost_submod/iostreams"]
path = source/external/boost_submod/iostreams
url = https://github.com/boostorg/iostreams.git
[submodule "source/external/boost_submod/iterator"]
path = source/external/boost_submod/iterator
url = https://github.com/boostorg/iterator.git
[submodule "source/external/boost_submod/locale"]
path = source/external/boost_submod/locale
url = https://github.com/boostorg/locale.git
[submodule "source/external/boost_submod/math"]
path = source/external/boost_submod/math
url = https://github.com/boostorg/math.git
[submodule "source/external/boost_submod/move"]
path = source/external/boost_submod/move
url = https://github.com/boostorg/move.git
[submodule "source/external/boost_submod/mp11"]
path = source/external/boost_submod/mp11
url = https://github.com/boostorg/mp11.git
[submodule "source/external/boost_submod/mpi"]
path = source/external/boost_submod/mpi
url = https://github.com/boostorg/mpi.git
[submodule "source/external/boost_submod/mpl"]
path = source/external/boost_submod/mpl
url = https://github.com/boostorg/mpl.git
[submodule "source/external/boost_submod/multiprecision"]
path = source/external/boost_submod/multiprecision
url = https://github.com/boostorg/multiprecision.git
[submodule "source/external/boost_submod/numeric_conversion"]
path = source/external/boost_submod/numeric_conversion
url = https://github.com/boostorg/numeric_conversion.git
[submodule "source/external/boost_submod/optional"]
path = source/external/boost_submod/optional
url = https://github.com/boostorg/optional.git
[submodule "source/external/boost_submod/parameter"]
path = source/external/boost_submod/parameter
url = https://github.com/boostorg/parameter.git
[submodule "source/external/boost_submod/phoenix"]
path = source/external/boost_submod/phoenix
url = https://github.com/boostorg/phoenix.git
[submodule "source/external/boost_submod/pool"]
path = source/external/boost_submod/pool
url = https://github.com/boostorg/pool.git
[submodule "source/external/boost_submod/predef"]
path = source/external/boost_submod/predef
url = https://github.com/boostorg/predef.git
[submodule "source/external/boost_submod/preprocessor"]
path = source/external/boost_submod/preprocessor
url = https://github.com/boostorg/preprocessor.git
[submodule "source/external/boost_submod/property_map"]
path = source/external/boost_submod/property_map
url = https://github.com/boostorg/property_map.git
[submodule "source/external/boost_submod/property_tree"]
path = source/external/boost_submod/property_tree
url = https://github.com/boostorg/property_tree.git
[submodule "source/external/boost_submod/proto"]
path = source/external/boost_submod/proto
url = https://github.com/boostorg/proto.git
[submodule "source/external/boost_submod/ptr_container"]
path = source/external/boost_submod/ptr_container
url = https://github.com/boostorg/ptr_container.git
[submodule "source/external/boost_submod/python"]
path = source/external/boost_submod/python
url = https://github.com/boostorg/python.git
[submodule "source/external/boost_submod/qvm"]
path = source/external/boost_submod/qvm
url = https://github.com/boostorg/qvm.git
[submodule "source/external/boost_submod/random"]
path = source/external/boost_submod/random
url = https://github.com/boostorg/random.git
[submodule "source/external/boost_submod/range"]
path = source/external/boost_submod/range
url = https://github.com/boostorg/range.git
[submodule "source/external/boost_submod/ratio"]
path = source/external/boost_submod/ratio
url = https://github.com/boostorg/ratio.git
[submodule "source/external/boost_submod/rational"]
path = source/external/boost_submod/rational
url = https://github.com/boostorg/rational.git
[submodule "source/external/boost_submod/regex"]
path = source/external/boost_submod/regex
url = https://github.com/boostorg/regex.git
[submodule "source/external/boost_submod/serialization"]
path = source/external/boost_submod/serialization
url = https://github.com/boostorg/serialization.git
[submodule "source/external/boost_submod/smart_ptr"]
path = source/external/boost_submod/smart_ptr
url = https://github.com/boostorg/smart_ptr.git
[submodule "source/external/boost_submod/spirit"]
path = source/external/boost_submod/spirit
url = https://github.com/boostorg/spirit.git
[submodule "source/external/boost_submod/static_assert"]
path = source/external/boost_submod/static_assert
url = https://github.com/boostorg/static_assert.git
[submodule "source/external/boost_submod/system"]
path = source/external/boost_submod/system
url = https://github.com/boostorg/system.git
[submodule "source/external/boost_submod/thread"]
path = source/external/boost_submod/thread
url = https://github.com/boostorg/thread.git
[submodule "source/external/boost_submod/throw_exception"]
path = source/external/boost_submod/throw_exception
url = https://github.com/boostorg/throw_exception.git
[submodule "source/external/boost_submod/timer"]
path = source/external/boost_submod/timer
url = https://github.com/boostorg/timer.git
[submodule "source/external/boost_submod/tokenizer"]
path = source/external/boost_submod/tokenizer
url = https://github.com/boostorg/tokenizer.git
[submodule "source/external/boost_submod/tti"]
path = source/external/boost_submod/tti
url = https://github.com/boostorg/tti.git
[submodule "source/external/boost_submod/tuple"]
path = source/external/boost_submod/tuple
url = https://github.com/boostorg/tuple.git
[submodule "source/external/boost_submod/type_index"]
path = source/external/boost_submod/type_index
url = https://github.com/boostorg/type_index.git
[submodule "source/external/boost_submod/typeof"]
path = source/external/boost_submod/typeof
url = https://github.com/boostorg/typeof.git
[submodule "source/external/boost_submod/type_traits"]
path = source/external/boost_submod/type_traits
url = https://github.com/boostorg/type_traits.git
[submodule "source/external/boost_submod/ublas"]
path = source/external/boost_submod/ublas
url = https://github.com/boostorg/ublas.git
[submodule "source/external/boost_submod/unordered"]
path = source/external/boost_submod/unordered
url = https://github.com/boostorg/unordered.git
[submodule "source/external/boost_submod/utility"]
path = source/external/boost_submod/utility
url = https://github.com/boostorg/utility.git
[submodule "source/external/boost_submod/uuid"]
path = source/external/boost_submod/uuid
url = https://github.com/boostorg/uuid.git
[submodule "source/external/boost_submod/variant"]
path = source/external/boost_submod/variant
url = https://github.com/boostorg/variant.git
[submodule "source/external/boost_submod/winapi"]
path = source/external/boost_submod/winapi
url = https://github.com/boostorg/winapi.git
[submodule "source/external/boost_submod/xpressive"]
path = source/external/boost_submod/xpressive
url = https://github.com/boostorg/xpressive.git
[submodule "source/external/boost_submod/crc"]
path = source/external/boost_submod/crc
url = https://github.com/boostorg/crc.git
[submodule "source/external/boost_submod/flyweight"]
path = source/external/boost_submod/flyweight
url = https://github.com/boostorg/flyweight.git
[submodule "source/external/boost_submod/multi_array"]
path = source/external/boost_submod/multi_array
url = https://github.com/boostorg/multi_array.git
############################
# PyRosetta-build-related
###########################
[submodule "source/src/python/PyRosetta/binder"]
path = source/src/python/PyRosetta/binder
url = ../../RosettaCommons/binder.git
[submodule "source/external/pybind11"]
path = source/external/pybind11
url = ../../RosettaCommons/pybind11.git
###########################
# Rosetta modules
###########################
[submodule "tools"]
path = tools
url = ../../RosettaCommons/tools.git
[submodule "demos"]
path = demos
url = ../../RosettaCommons/demos.git
[submodule "documentation"]
path = documentation
url = ../../RosettaCommons/documentation.git
[submodule "database/additional_protocol_data"]
path = database/additional_protocol_data
url = ../../RosettaCommons/additional_protocol_data.git
[submodule "tests/scientific/data"]
path = tests/scientific/data
url = ../../RosettaCommons/scientific_benchmark_data.git
[submodule "rosetta_scripts_scripts"]
path = rosetta_scripts_scripts
url = ../../RosettaCommons/rosetta_scripts_scripts.git
[submodule "pyrosetta_scripts"]
path = pyrosetta_scripts
url = ../../RosettaCommons/pyrosetta_scripts.git
[submodule "PyRosetta.notebooks"]
path = PyRosetta.notebooks
url = ../../RosettaCommons/PyRosetta.notebooks.git
############################
[submodule "database/protocol_data/tensorflow_graphs/tensorflow_graph_repo_submodule"]
path = database/protocol_data/tensorflow_graphs/tensorflow_graph_repo_submodule
url = ../../RosettaCommons/tensorflow_graphs.git