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.gitlab-ci.yml
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workflow:
rules:
- if: '$CI_PIPELINE_SOURCE=="schedule" && $CI_COMMIT_REF_NAME=="master"' ## nightly scheduled pipeline at 4:15 UTC
- if: '$CI_PIPELINE_SOURCE=="web"' ## manually started from web UI
- if: '$CI_PIPELINE_SOURCE=="push" && $CI_COMMIT_REF_NAME!="master"' ## branches pushed to GL directly, mirror is set for master branch only
variables:
CRAN_MIRROR: "https://cloud.r-project.org"
_R_CHECK_FORCE_SUGGESTS_: "false"
_R_CHECK_NO_STOP_ON_TEST_ERROR_: "true"
_R_CHECK_SYSTEM_CLOCK_: "false" ## https://stackoverflow.com/questions/63613301/r-cmd-check-note-unable-to-verify-current-time
_R_CHECK_TESTS_NLINES_: "0"
TZ: "UTC" ## to avoid 'Failed to create bus connection' from timedatectl via Sys.timezone() on Docker with R 3.4.
## Setting TZ for all GLCI jobs to isolate them from timezone. We could have a new GLCI job to test under
## a non-UTC timezone, although, that's what we do routinely in dev.
R_REL_VERSION: "4.4" # only raise when RTOOLS for REL is available
R_REL_WIN_BIN: "https://cloud.r-project.org/bin/windows/base/old/4.4.1/R-4.4.1-win.exe"
R_DEV_VERSION: "4.5"
R_DEV_WIN_BIN: "https://cloud.r-project.org/bin/windows/base/R-devel-win.exe"
R_OLD_VERSION: "4.3"
R_OLD_WIN_BIN: "https://cloud.r-project.org/bin/windows/base/old/4.3.3/R-4.3.3-win.exe"
R_REL_MAC_BIN: "https://cloud.r-project.org/bin/macosx/big-sur-arm64/base/R-4.4.1-arm64.pkg"
R_OLD_MAC_BIN: "https://cloud.r-project.org/bin/macosx/big-sur-arm64/base/R-4.3.3-arm64.pkg"
stages:
- dependencies
- build
- test
- integration
- deploy
.artifacts-template: &artifacts
artifacts:
expire_in: 2 weeks
when: always
paths:
- bus/$CI_JOB_NAME
## mirror packages
# download all recursive dependencies once to be used across multiple test jobs
# sources and binaries for r-release, r-devel and r-oldrel
# cache between runs
mirror-packages:
stage: dependencies
tags:
- saas-linux-medium-amd64
image: registry.gitlab.com/jangorecki/dockerfiles/r-base-minimal
cache:
paths:
- bus/$CI_JOB_NAME/cran
script:
- echo 'source(".ci/ci.R")' >> .Rprofile
- mkdir -p bus/$CI_JOB_NAME/cran/src/contrib
- Rscript -e 'mirror.packages(dcf.dependencies("DESCRIPTION", "all"), repos=Sys.getenv("CRAN_MIRROR"), repodir="bus/mirror-packages/cran")'
- Rscript -e 'sapply(simplify=FALSE, setNames(nm=Sys.getenv(c("R_REL_VERSION","R_DEV_VERSION","R_OLD_VERSION"))), function(binary.ver) mirror.packages(type="win.binary", dcf.dependencies("DESCRIPTION", "all"), repos=Sys.getenv("CRAN_MIRROR"), repodir="bus/mirror-packages/cran", binary.ver=binary.ver))'
- Rscript -e 'sapply(simplify=FALSE, setNames(nm=Sys.getenv(c("R_REL_VERSION","R_OLD_VERSION"))), function(binary.ver) mirror.packages(type="mac.binary.big-sur-arm64", dcf.dependencies("DESCRIPTION", "all"), repos=Sys.getenv("CRAN_MIRROR"), repodir="bus/mirror-packages/cran", binary.ver=binary.ver))'
<<: *artifacts
## install deps alias
.test-install-deps: &install-deps
- Rscript -e 'source(".ci/ci.R"); install.packages(dcf.dependencies("DESCRIPTION", which="all"), repos=file.path("file:", normalizePath("bus/mirror-packages/cran", mustWork=FALSE)), quiet=TRUE)'
## build
# sources as tar.gz archive
# build vignettes
build:
stage: build
tags:
- saas-linux-medium-amd64
image: registry.gitlab.com/jangorecki/dockerfiles/r-base-gcc
needs: ["mirror-packages"]
before_script:
- *install-deps
- rm -r bus
script:
- sed -i '/^[[:space:]]*$/d' ./DESCRIPTION ## make last line end abruptly; i.e. without a final \n
- echo "Revision:" $CI_COMMIT_SHA >> ./DESCRIPTION
- R CMD build .
- mkdir -p bus/$CI_JOB_NAME/
- mv $(ls -1t data.table_*.tar.gz | head -n 1) bus/$CI_JOB_NAME/
<<: *artifacts
.test-template: &test
stage: test
needs: ["mirror-packages","build"]
allow_failure: true
<<: *artifacts
.test-lin-template: &test-lin
<<: *test
tags:
- saas-linux-medium-amd64
before_script:
- cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) .
- mkdir -p ~/.R
after_script:
- mkdir -p bus/$CI_JOB_NAME
- echo $CI_JOB_ID > bus/$CI_JOB_NAME/id
- echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status
- echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image
- '[ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/'
## most comprehensive tests
# force all suggests
# flags: gcc -O3 -flto=auto -fno-common -Wunused-result
# tests for compilation warnings
test-lin-rel:
<<: *test-lin
image: registry.gitlab.com/jangorecki/dockerfiles/r-data.table
variables:
_R_CHECK_COMPILATION_FLAGS_KNOWN_: "-Wvla"
_R_CHECK_CRAN_INCOMING_: "FALSE"
_R_CHECK_CRAN_INCOMING_REMOTE_: "FALSE"
_R_CHECK_FORCE_SUGGESTS_: "TRUE"
OPENBLAS_MAIN_FREE: "1"
script:
- *install-deps
- echo 'CFLAGS=-g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' > ~/.R/Makevars
- echo 'CXXFLAGS=-g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars
- R CMD check $(ls -1t data.table_*.tar.gz | head -n 1)
- (! grep "warning:" data.table.Rcheck/00install.out)
## vanilla minimal
# no zlib
# no suggested deps
# no vignettes or manuals
# no openmp
# flags: gcc -O0 -fno-openmp
test-lin-rel-vanilla:
<<: *test-lin
image: registry.gitlab.com/jangorecki/dockerfiles/r-base-gcc
variables:
_R_CHECK_COMPILATION_FLAGS_KNOWN_: "-Wvla"
script:
- echo 'CFLAGS=-g -O0 -fno-openmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' > ~/.R/Makevars
- echo 'CXXFLAGS=-g -O0 -fno-openmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars
- R CMD check --no-manual --ignore-vignettes $(ls -1t data.table_*.tar.gz | head -n 1)
## R-release on Linux
# strict checks for 0 NOTEs
# extra NOTEs check and build pdf manual thus not from cran-lin template
test-lin-rel-cran:
<<: *test-lin
image: registry.gitlab.com/jangorecki/dockerfiles/r-base
variables:
_R_CHECK_CRAN_INCOMING_: "TRUE" ## stricter --as-cran checks should run in dev pipelines continuously (not sure what they are though)
_R_CHECK_CRAN_INCOMING_REMOTE_: "FALSE" ## Other than no URL checking (takes many minutes) or 'Days since last update 0' NOTEs needed, #3284
_R_CHECK_CRAN_INCOMING_TARBALL_THRESHOLD_: "7500000" ## bytes
_R_CHECK_PKG_SIZES_THRESHOLD_: "10" ## MB 'checking installed package size' NOTE increased due to po
script:
- *install-deps
- echo 'CFLAGS=-g -O2 -fopenmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' > ~/.R/Makevars
- echo 'CXXFLAGS=-g -O2 -fopenmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars
- R CMD check --as-cran $(ls -1t data.table_*.tar.gz | head -n 1)
- >-
Rscript -e 'l=tail(readLines("data.table.Rcheck/00check.log"), 1L); if (!identical(l, "Status: OK")) stop("Last line of ", shQuote("00check.log"), " is not ", shQuote("Status: OK"), " but ", shQuote(l)) else q("no")'
## R-devel on Linux gcc strict
# R built with --enable-strict-barrier --disable-long-double
# tests for compilation warnings
# tests for new notes
test-lin-dev-gcc-strict-cran:
<<: *test-lin
image: registry.gitlab.com/jangorecki/dockerfiles/r-devel-gcc-strict
variables:
_R_CHECK_COMPILATION_FLAGS_KNOWN_: "-Wvla"
_R_CHECK_CRAN_INCOMING_: "TRUE"
_R_CHECK_CRAN_INCOMING_REMOTE_: "FALSE"
_R_S3_METHOD_LOOKUP_BASEENV_AFTER_GLOBALENV_: "FALSE" ## detects S3 method lookup found on search path #4777
_R_S3_METHOD_LOOKUP_REPORT_SEARCH_PATH_USES_: "TRUE"
script:
- echo 'CFLAGS=-g -O2 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' > ~/.R/Makevars
- echo 'CXXFLAGS=-g -O2 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars
- *install-deps
- R CMD check --as-cran $(ls -1t data.table_*.tar.gz | head -n 1)
- (! grep "warning:" data.table.Rcheck/00install.out)
- >-
Rscript -e 'l=tail(readLines("data.table.Rcheck/00check.log"), 1L); notes<-"Status: 3 NOTEs"; if (!identical(l, notes)) stop("Last line of ", shQuote("00check.log"), " is not ", shQuote(notes), " (size of tarball, installed package size, non-API calls) but ", shQuote(l)) else q("no")'
## R-devel on Linux clang
# R compiled with clang, flags removed: -flto=auto -fopenmp
# tests for compilation warnings
# tests for new notes
test-lin-dev-clang-cran:
<<: *test-lin
image: registry.gitlab.com/jangorecki/dockerfiles/r-devel-clang
variables:
_R_CHECK_COMPILATION_FLAGS_KNOWN_: "-Wvla"
_R_CHECK_CRAN_INCOMING_: "TRUE"
_R_CHECK_CRAN_INCOMING_REMOTE_: "FALSE"
_R_S3_METHOD_LOOKUP_BASEENV_AFTER_GLOBALENV_: "FALSE"
_R_S3_METHOD_LOOKUP_REPORT_SEARCH_PATH_USES_: "TRUE"
script:
- echo 'CFLAGS=-g -O2 -fno-common -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' > ~/.R/Makevars
- echo 'CXXFLAGS=-g -O2 -fno-common -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars
- *install-deps
- R CMD check --as-cran $(ls -1t data.table_*.tar.gz | head -n 1)
- (! grep "warning:" data.table.Rcheck/00install.out)
- >-
Rscript -e 'l=tail(readLines("data.table.Rcheck/00check.log"), 1L); notes<-"Status: 2 NOTEs"; if (!identical(l, notes)) stop("Last line of ", shQuote("00check.log"), " is not ", shQuote(notes), " (size of tarball, non-API calls) but ", shQuote(l)) else q("no")'
# stated dependency on R
test-lin-ancient-cran:
<<: *test-lin
image: registry.gitlab.com/jangorecki/dockerfiles/r-3.3.0
variables:
_R_CHECK_FORCE_SUGGESTS_: "FALSE" # can be removed if all dependencies are available (knitr, xts, etc.)
script:
- *install-deps
# knitr requires evaluate, which requires R 3.6.0.
# Restore checking vignettes if upgrading our R dependency means knitr can be installed.
- R CMD check --no-manual --no-build-vignettes --ignore-vignettes $(ls -1t data.table_*.tar.gz | head -n 1)
.test-win-template: &test-win
<<: *test
tags:
- saas-windows-medium-amd64
before_script:
- Invoke-WebRequest -Uri $R_BIN -OutFile ../R-win.exe -ErrorAction Stop; if (!(Test-Path -Path ..\R-win.exe)) {Write-Error "R-win.exe not found, download failed?"}
- Start-Process -FilePath ..\R-win.exe -ArgumentList "/VERYSILENT /DIR=C:\R" -NoNewWindow -Wait
- $VERSION = $RTOOLS_VERSION -replace '\.', ''
# persist RTOOLSXX_HOME="/c/rtools" which is needed for finding gcc #6552
- Add-Content -Path ".\.Renviron" -Value "RTOOLS${VERSION}_HOME='/c/rtools'"
- $RTOOLS_BIN="https://github.com/r-hub/rtools${VERSION}/releases/download/latest/rtools${VERSION}.exe"
- Invoke-WebRequest -Uri $RTOOLS_BIN -OutFile ../rtools.exe -ErrorAction Stop; if (!(Test-Path -Path ..\rtools.exe)) {Write-Error "rtools.exe not found, download failed?"}
- Start-Process -FilePath ..\rtools.exe -ArgumentList "/VERYSILENT /DIR=C:\rtools" -NoNewWindow -Wait
- $env:PATH = "C:\R\bin;C:\rtools\usr\bin;$env:PATH"
- Rscript.exe -e "source('.ci/ci.R'); install.packages(dcf.dependencies('DESCRIPTION', which='all'), repos=file.path('file://',getwd(),'bus/mirror-packages/cran'), quiet=TRUE)"
- cp.exe $(ls.exe -1t bus/build/data.table_*.tar.gz | head.exe -n 1) .
script:
- R.exe CMD check --no-manual $(ls.exe -1t data.table_*.tar.gz | head.exe -n 1)
- R.exe CMD INSTALL --build $(ls.exe -1t data.table_*.tar.gz | head.exe -n 1)
- -not (grep.exe "warning:" data.table.Rcheck\00install.out)
after_script:
- $env:PATH = "C:\R\bin;C:\rtools\usr\bin;$env:PATH"
- mkdir.exe -p bus/$CI_JOB_NAME
- Rscript.exe -e "cat(Sys.getenv('CI_JOB_ID'), file=file.path('bus', Sys.getenv('CI_JOB_NAME'), 'id'))"
- Rscript.exe -e "cat(Sys.getenv('CI_JOB_STATUS'), file=file.path('bus', Sys.getenv('CI_JOB_NAME'), 'status'))"
- Rscript.exe -e "cat(Sys.getenv('CI_JOB_IMAGE'), file=file.path('bus', Sys.getenv('CI_JOB_NAME'), 'image'))"
- Rscript.exe -e "to<-file.path('bus', Sys.getenv('CI_JOB_NAME'), 'data.table.Rcheck'); if (dir.exists(from<-'data.table.Rcheck')) invisible(file.rename(from, to)); dir.exists(to)"
- Rscript.exe -e "from<-tail(list.files(pattern='^data\\.table_.*\\.zip$'), 1L); to<-file.path('bus', Sys.getenv('CI_JOB_NAME'), from); if (length(from)) invisible(file.rename(from, to)); length(to)&&file.exists(to)"
## R-release on Windows
# test and build binaries
test-win-rel:
<<: *test-win
variables:
R_BIN: "$R_REL_WIN_BIN"
RTOOLS_VERSION: "$R_REL_VERSION"
## R-devel on Windows
# test and build binaries
test-win-dev:
<<: *test-win
variables:
R_BIN: "$R_DEV_WIN_BIN"
RTOOLS_VERSION: "$R_REL_VERSION"
## R-oldrel on Windows
# test and build binaries
test-win-old:
<<: *test-win
variables:
R_BIN: "$R_OLD_WIN_BIN"
RTOOLS_VERSION: "$R_OLD_VERSION"
.test-mac-template: &test-mac
<<: *test
tags:
- saas-macos-medium-m1
before_script:
- curl -O $R_BIN
- sudo installer -pkg "$(ls -1t R-*-arm64.pkg | head -n 1)" -target /
- *install-deps
- cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) .
script:
- R CMD check --no-manual $(ls -1t data.table_*.tar.gz | head -n 1)
- R CMD INSTALL --build $(ls -1t data.table_*.tar.gz | head -n 1)
after_script:
- mkdir -p bus/$CI_JOB_NAME
- '[ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/'
- '[ -f data.table_*.tgz ] && mv $(ls -1t data.table_*.tgz | head -n 1) bus/$CI_JOB_NAME/'
- echo $CI_JOB_ID > bus/$CI_JOB_NAME/id
- echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status
- echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image
## R-release on MacOS
test-mac-rel:
<<: *test-mac
variables:
R_VERSION: "$R_REL_VERSION"
R_BIN: "$R_REL_MAC_BIN"
## R-oldrel on MacOS
test-mac-old:
<<: *test-mac
variables:
R_VERSION: "$R_OLD_VERSION"
R_BIN: "$R_OLD_MAC_BIN"
## integrate artifacts
# merging package tarballs and binaries into single R repository
# rendering documentation
# setting up CRAN-like structure
# generating pkgdown website
integration:
stage: integration
image: registry.gitlab.com/jangorecki/dockerfiles/r-pkgdown
tags:
- saas-linux-medium-amd64
only:
- master
needs: ["mirror-packages","build","test-lin-rel","test-lin-rel-cran","test-lin-dev-gcc-strict-cran","test-lin-dev-clang-cran","test-lin-rel-vanilla","test-lin-ancient-cran","test-win-rel","test-win-dev" ,"test-win-old","test-mac-rel","test-mac-old"]
script:
- R --version
- *install-deps ## markdown pkg not present in r-pkgdown image
- mkdir -p ./pkgdown/favicon/ && cp .graphics/favicon/* ./pkgdown/favicon/ ## copy favicons
- Rscript -e 'pkgdown::build_site(override=list(destination="./website"))'
## html manual, vignettes, repos, cran_web, cran_checks
- echo 'source(".ci/ci.R"); source(".ci/publish.R")' >> .Rprofile
## list of available test-* jobs dynamically based on bus/test-* directories
- Rscript -e 'cat("\ntest.jobs <- c(\n"); cat(paste0(" \"",list.files("bus",pattern="^test-"),"\" = \"data.table\""), sep=",\n"); cat(")\n")' >> .Rprofile
- Rscript -e 'sapply(names(test.jobs), check.test, pkg="data.table", simplify=FALSE)'
- mkdir -p bus/$CI_JOB_NAME
## delete any existing non-dev version of data.table
- rm -f bus/mirror-packages/cran/src/contrib/data.table_*.tar.gz
- rm -f bus/mirror-packages/cran/bin/windows/contrib/$R_REL_VERSION/data.table_*.zip
- rm -f bus/mirror-packages/cran/bin/windows/contrib/$R_DEV_VERSION/data.table_*.zip
- rm -f bus/mirror-packages/cran/bin/windows/contrib/$R_OLD_VERSION/data.table_*.zip
- rm -f bus/mirror-packages/cran/bin/macosx/big-sur-arm64/contrib/$R_REL_VERSION/data.table_*.tgz
# - rm -f bus/mirror-packages/cran/bin/macosx/big-sur-arm64/contrib/$R_DEV_VERSION/data.table_*.tgz
- rm -f bus/mirror-packages/cran/bin/macosx/big-sur-arm64/contrib/$R_OLD_VERSION/data.table_*.tgz
## merge mirror-packages and R devel packages
- mv bus/mirror-packages/cran bus/$CI_JOB_NAME/
## publish package sources
- mkdir -p bus/$CI_JOB_NAME/cran/library bus/$CI_JOB_NAME/cran/doc
- mv $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) bus/$CI_JOB_NAME/cran/src/contrib
- Rscript -e 'tools::write_PACKAGES(contrib.url("bus/integration/cran", type="source"), type="source", fields="Revision", addFiles=TRUE)'
## publish binaries
- mkdir -p bus/integration/cran/bin/windows/contrib/$R_REL_VERSION/
- mkdir -p bus/integration/cran/bin/windows/contrib/$R_DEV_VERSION/
- mkdir -p bus/integration/cran/bin/windows/contrib/$R_OLD_VERSION/
- '[ -f bus/test-win-rel/data.table_*.zip ] && cp bus/test-win-rel/data.table_*.zip bus/integration/cran/bin/windows/contrib/$R_REL_VERSION/'
- ls -1 "bus/integration/cran/bin/windows/contrib/$R_REL_VERSION"/data.table_*.zip || true
- '[ -f bus/test-win-dev/data.table_*.zip ] && cp bus/test-win-dev/data.table_*.zip bus/integration/cran/bin/windows/contrib/$R_DEV_VERSION/'
- ls -1 "bus/integration/cran/bin/windows/contrib/$R_DEV_VERSION"/data.table_*.zip || true
- '[ -f bus/test-win-old/data.table_*.zip ] && cp bus/test-win-old/data.table_*.zip bus/integration/cran/bin/windows/contrib/$R_OLD_VERSION/'
- ls -1 "bus/integration/cran/bin/windows/contrib/$R_OLD_VERSION"/data.table_*.zip || true
- Rscript -e 'tools::write_PACKAGES(contrib.url("bus/integration/cran", type="win.binary", ver=Sys.getenv("R_REL_VERSION")), type="win.binary", fields="Revision", addFiles=TRUE)'
- Rscript -e 'tools::write_PACKAGES(contrib.url("bus/integration/cran", type="win.binary", ver=Sys.getenv("R_DEV_VERSION")), type="win.binary", fields="Revision", addFiles=TRUE)'
- Rscript -e 'tools::write_PACKAGES(contrib.url("bus/integration/cran", type="win.binary", ver=Sys.getenv("R_OLD_VERSION")), type="win.binary", fields="Revision", addFiles=TRUE)'
#### macos mkdir cran/bin/.../contrib/...
- mkdir -p bus/integration/cran/bin/macosx/big-sur-arm64/contrib/$R_REL_VERSION/
# - mkdir -p bus/integration/cran/bin/macosx/big-sur-arm64/contrib/$R_DEV_VERSION/
- mkdir -p bus/integration/cran/bin/macosx/big-sur-arm64/contrib/$R_OLD_VERSION/
#### macos move binaries
- '[ -f bus/test-mac-rel/data.table_*.tgz ] && cp bus/test-mac-rel/data.table_*.tgz bus/integration/cran/bin/macosx/big-sur-arm64/contrib/$R_REL_VERSION/'
- ls -1 "bus/integration/cran/bin/macosx/big-sur-arm64/contrib/$R_REL_VERSION"/data.table_*.tgz || true
# - '[ -f bus/test-mac-dev/data.table_*.tgz ] && cp bus/test-mac-dev/data.table_*.tgz bus/integration/cran/bin/macosx/big-sur-arm64/contrib/$R_DEV_VERSION/'
# - ls -1 "bus/integration/cran/bin/macosx/big-sur-arm64/contrib/$R_DEV_VERSION"/data.table_*.tgz || true
- '[ -f bus/test-mac-old/data.table_*.tgz ] && cp bus/test-mac-old/data.table_*.tgz bus/integration/cran/bin/macosx/big-sur-arm64/contrib/$R_OLD_VERSION/'
- ls -1 "bus/integration/cran/bin/macosx/big-sur-arm64/contrib/$R_OLD_VERSION"/data.table_*.tgz || true
#### macos write_PACKAGES
- Rscript -e 'tools::write_PACKAGES(contrib.url("bus/integration/cran", type="mac.binary.big-sur-arm64", ver=Sys.getenv("R_REL_VERSION")), type="mac.binary", fields="Revision", addFiles=TRUE)'
# - Rscript -e 'tools::write_PACKAGES(contrib.url("bus/integration/cran", type="mac.binary.big-sur-arm64", ver=Sys.getenv("R_DEV_VERSION")), type="mac.binary", fields="Revision", addFiles=TRUE)'
- Rscript -e 'tools::write_PACKAGES(contrib.url("bus/integration/cran", type="mac.binary.big-sur-arm64", ver=Sys.getenv("R_OLD_VERSION")), type="mac.binary", fields="Revision", addFiles=TRUE)'
## install pkg to render html
- mkdir -p /tmp/opencran/library /tmp/opencran/doc/html
- Rscript -e 'install.packages("data.table", lib="/tmp/opencran/library", repos=file.path("file:",normalizePath("bus/integration/cran")), INSTALL_opts="--html", quiet=TRUE)'
- Rscript -e 'packageVersion("data.table", lib.loc="/tmp/opencran/library")'
## CRAN style web/CRAN_web.css
- wget -q -P bus/integration/cran/web https://cran.r-project.org/web/CRAN_web.css
## web/packages/$pkg/index.html
- Rscript -e 'sapply(setNames(nm=rownames(installed.packages(lib.loc="/tmp/opencran/library", priority="NA"))), package.index, lib.loc="/tmp/opencran/library")'
## R docs, html, css, icons
- Rscript -e 'doc.copy(repodir="/tmp/opencran")'
## Update packages.html, fix paths
- Rscript -e 'setwd("/tmp/opencran/doc/html"); make.packages.html(lib.loc="../../library", docdir="/tmp/opencran/doc"); tmp<-readLines(f<-"/tmp/opencran/doc/html/packages.html"); writeLines(gsub("file:///../../library","../../library", tmp, fixed=TRUE), f)'
- mv /tmp/opencran/doc bus/integration/cran/
## library html manual, vignettes
- Rscript -e 'lib.copy(lib.from="/tmp/opencran/library")'
## web/checks/$pkg/$job 00install.out, 00check.log, *.Rout
- Rscript -e 'sapply(names(test.jobs), check.copy)'
## web/packages/$pkg/$pkg.pdf
- Rscript -e 'pdf.copy("data.table", "test-lin-rel")'
## web/checks/check_results_$pkg.html
- Rscript -e 'check.index("data.table", names(test.jobs))'
## web/checks/check_flavors.html
- Rscript -e 'check.flavors(names(test.jobs))'
## pkgdown merge
- Rscript -e 'common_files<-function(path1, path2) intersect(list.files(path1, all.files=TRUE, no..=TRUE), list.files(path2, all.files=TRUE, no..=TRUE)); msg = if (length(f<-common_files("website","bus/integration/cran"))) paste(c("Following artifacts will be overwritten by pkgdown artifacts:", paste0(" ", f)), collapse="\n") else "No overlapping files from pkgdown artifacts"; message(msg); q("no")'
- mv website/* bus/integration/cran/
## add plausible.io stats
- find bus/integration/cran -type f -iname "*.html" | xargs sed -i 's!<head>!<head><script defer data-domain="rdatatable.gitlab.io/data.table" src="https://plausible.io/js/script.js"></script>!g'
<<: *artifacts
## publish
# R repository
# test jobs summaries
# html documentation of all packages in repo
# pkgdown website
pages:
stage: deploy
environment: production
tags:
- saas-linux-medium-amd64
only:
- master
image: ubuntu
needs: ["integration"]
script:
- mkdir -p public
- cp -r bus/integration/cran/* public
- cat public/src/contrib/PACKAGES
artifacts:
expire_in: 2 weeks
paths:
- public