diff --git a/.github/workflows/build_docs.yml b/.github/workflows/build_docs.yml index 36e4e919..b50b4940 100644 --- a/.github/workflows/build_docs.yml +++ b/.github/workflows/build_docs.yml @@ -25,7 +25,7 @@ jobs: build: runs-on: ubuntu-22.04 - container: ghcr.io/scientificcomputing/fenics:2023-01-16 + container: ghcr.io/scientificcomputing/fenics-gmsh:2023-02-17a env: DEB_PYTHON_INSTALL_LAYOUT: deb_system PUBLISH_DIR: ./_build/html diff --git a/.github/workflows/test_fenics_stubs.yml b/.github/workflows/test_fenics_stubs.yml index 3c5a3cb4..9c42f7e7 100644 --- a/.github/workflows/test_fenics_stubs.yml +++ b/.github/workflows/test_fenics_stubs.yml @@ -17,7 +17,7 @@ jobs: check-code: runs-on: ubuntu-22.04 # Runs against FEniCS main branch built the 16-01-2023 - container: ghcr.io/scientificcomputing/fenics:2023-01-16 + container: ghcr.io/scientificcomputing/fenics-gmsh:2023-02-17a steps: # This action sets the current path to the root of your github repo - uses: actions/checkout@v3 diff --git a/docker/Dockerfile_dev b/docker/Dockerfile_dev index 5ea85b96..e2ae2671 100644 --- a/docker/Dockerfile_dev +++ b/docker/Dockerfile_dev @@ -10,7 +10,7 @@ # $ docker run -ti --name stubs --init -p 8080:8888 -v $HOME:/home/fenics/shared stubs:latest # Base fenics dev image -FROM quay.io/fenicsproject/dev +FROM ghcr.io/scientificcomputing/fenics:2023-01-16 # ====================================================== @@ -87,8 +87,9 @@ RUN python3 -m pip install tikzplotlib # this is to install just the dependencies so that we can use the local version of stubs RUN python3 -m pip install fenics-stubs RUN python3 -m pip uninstall --yes fenics-stubs -# now we add the local repo to the pythonpath -ENV PYTHONPATH "${PYTHONPATH}:$FENICS_HOME/shared/gitrepos/stubs" +# now we add the local repo to the pythonpath +ENV FENICS_HOME "/root" +ENV PYTHONPATH "/root/shared/gitrepos/stubs-dev" # bashrc settings (this appends to the top of the file) @@ -142,13 +143,4 @@ highlight ColorColumn ctermbg=7" >> $FENICS_HOME/.vimrc RUN ["/bin/bash", "-c", "source $FENICS_HOME/.bashrc"] #RUN cd $FENICS_SRC_DIR/dolfin #build cmake -#build pybind11 cd $FENICS_SRC_DIR/dolfin - - - - -# dont want my email floating around on the internet -RUN email_name="justinglaughlin" -RUN git config --global user.email "$email_name@gmail.com" -RUN git config --global user.name "justinlaughlin" - +#build pybind11 cd $FENICS_SRC_DIR/dolfin \ No newline at end of file diff --git a/examples/example1/example1.ipynb b/examples/example1/example1.ipynb index 63961d89..cf4d6d7a 100644 --- a/examples/example1/example1.ipynb +++ b/examples/example1/example1.ipynb @@ -25,7 +25,7 @@ }, { "cell_type": "code", - "execution_count": 5, + "execution_count": null, "id": "cc398816", "metadata": {}, "outputs": [], @@ -50,7 +50,7 @@ }, { "cell_type": "code", - "execution_count": 6, + "execution_count": null, "id": "4f4023cf", "metadata": {}, "outputs": [], @@ -78,7 +78,7 @@ }, { "cell_type": "code", - "execution_count": 7, + "execution_count": null, "id": "09079b17", "metadata": {}, "outputs": [], @@ -169,4013 +169,11 @@ }, { "cell_type": "code", - "execution_count": 8, + "execution_count": null, "id": "fe56e162", "metadata": {}, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "\u001b[32m[2023-02-28 time=02:39:12] Creating dolfin object for space-dependent initial condition R1\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[35m!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\u001b[0m\n", - "\u001b[35m!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\u001b[0m\n", - "\u001b[35m!!!!!\u001b[0m \u001b[31m[2023-02-28 time=02:39:12] Warning! Pre-integrating parameter j1pulse. Make sure that expressions j1pulse appears in have no other time-dependent variables.\u001b[0m \u001b[35m!!!!!\u001b[0m\n", - "\u001b[35m!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\u001b[0m\n", - "\u001b[35m!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\u001b[0m\n", - "\n", - "\n", - "\u001b[35m!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\u001b[0m\n", - "\u001b[35m!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\u001b[0m\n", - "\u001b[35m!!!!!\u001b[0m \u001b[31m[2023-02-28 time=02:39:12] Warning! Pre-integrating parameter j1pulse. Make sure that expressions j1pulse appears in have no other time-dependent variables.\u001b[0m \u001b[35m!!!!!\u001b[0m\n", - "\u001b[35m!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\u001b[0m\n", - "\u001b[35m!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\u001b[0m\n", - "\n", - "\u001b[32m[2023-02-28 time=02:39:12] Time-dependent parameter j1pulse evaluated from expression.\u001b[0m \u001b[97m\u001b[0m\n", - "HDF5 mesh, \"parent_mesh\", successfully loaded from file: mesh/DemoCuboidsMesh.h5!\n", - "['FFC', 'UFL', 'djitso', 'dolfin']\n", - "['FFC', 'UFL', 'djitso', 'dolfin']\n", - "\n", - "\u001b[36m======================================================================================================================\u001b[0m\n", - "\u001b[36m========================\u001b[0m \u001b[35m[2023-02-28 time=02:39:12] Checking validity of model (step 1 of ZZ)\u001b[0m \u001b[36m========================\u001b[0m\n", - "\u001b[36m======================================================================================================================\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:12] Check that mesh/compartment dimensionalities match\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:12] Checking for namespace conflicts\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[36m=====================\u001b[0m \u001b[35m[2023-02-28 time=02:39:12] Step 1 of initialization completed successfully!\u001b[0m \u001b[36m=====================\u001b[0m\n", - "\n", - "\u001b[36m=======================================================================================================================\u001b[0m\n", - "\u001b[36m=================\u001b[0m \u001b[35m[2023-02-28 time=02:39:12] Cross-Container Dependent Initializations (step 2 of ZZ)\u001b[0m \u001b[36m=================\u001b[0m\n", - "\u001b[36m=======================================================================================================================\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:12] Turning reactions into unsigned symbolic flux strings\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:12] Make sure all reactions have parameters/species defined\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:12] Linking parameters, species, and compartments to reactions\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:12] Checking for unused parameters, species, or compartments\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:12] Linking compartments and compartment dimensionality to species\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:12] Linking species to compartments\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:12] Getting indices for species for each compartment\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[36m=====================\u001b[0m \u001b[35m[2023-02-28 time=02:39:12] Step 2 of initialization completed successfully!\u001b[0m \u001b[36m=====================\u001b[0m\n", - "\n", - "\u001b[36m======================================================================================================================\u001b[0m\n", - "\u001b[36m=======================\u001b[0m \u001b[35m[2023-02-28 time=02:39:12] Mesh-related Initializations (step 3 of ZZ)\u001b[0m \u001b[36m=======================\u001b[0m\n", - "\u001b[36m======================================================================================================================\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:12] Defining child meshes\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:12] Defining parent mesh functions\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:12] Extracting submeshes using MeshView\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:12] Building MeshView mappings between all child mesh pairs\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[35m!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\u001b[0m\n", - "\u001b[35m!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\u001b[0m\n", - "\u001b[35m!!!!!!!!!!!!!!!!!!!!!!!!!\u001b[0m \u001b[31m[2023-02-28 time=02:39:12] DEBUGGING 3_5, 3_6 (mesh intersections)\u001b[0m \u001b[35m!!!!!!!!!!!!!!!!!!!!!!!!!\u001b[0m\n", - "\u001b[35m!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\u001b[0m\n", - "\u001b[35m!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\u001b[0m\n", - "\n", - "\u001b[32m[2023-02-28 time=02:39:12] Getting integration measures for parent mesh and child meshes\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[97m.....................\u001b[0m \u001b[35m[2023-02-28 time=02:39:12] Step 3 of initialization completed successfully!\u001b[0m \u001b[97m.....................\u001b[0m\n", - "\n", - "\u001b[36m======================================================================================================================\u001b[0m\n", - "\u001b[36m==========================\u001b[0m \u001b[35m[2023-02-28 time=02:39:12] Dolfin Initializations (step 4 of ZZ)\u001b[0m \u001b[36m==========================\u001b[0m\n", - "\u001b[36m======================================================================================================================\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:12] Defining dolfin function spaces for compartments\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:12] Defining function space for ERm (dim: 2, species: 2, dofs: 0)\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:12] Defining function space for ER (dim: 3, species: 1, dofs: 0)\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:12] Defining function space for Cyto (dim: 3, species: 2, dofs: 0)\u001b[0m \u001b[97m\u001b[0m\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the ma\u001b[32m[2023-02-28 time=02:39:12] Defining dolfin functions\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:12] Extracting subfunctions/function spaces/dofmap for each species\u001b[0m \u001b[97m\u001b[0m\n", - "pping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Inde\u001b[32m[2023-02-28 time=02:39:12] Naming functions and subfunctions\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:12] Checking that dolfin functions were created correctly\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:12] Set function values to initial conditions\u001b[0m \u001b[97m\u001b[0m\n", - "x not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :In\n", - "\u001b[36m======================================================================================================================\u001b[0m\n", - "\u001b[36m================\u001b[0m \u001b[35m[2023-02-28 time=02:39:12] Dolfin fluxes, forms, and problems+solvers (step 5 of ZZ)\u001b[0m \u001b[36m================\u001b[0m\n", - "\u001b[36m======================================================================================================================\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:12] Convert reactions to flux objects\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:12] Getting fluxes for reaction r4\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[32m[2023-02-28 time=02:39:12] Flux r4 [A (f)] scaled by 0.0016605390404271648 micrometer ** 3 * micromolar / molecule\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:12] Old flux units: 1.0 micrometer * micromolar / second\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:12] New flux units: 1.0 micrometer * micromolar / second\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\n", - "DEBUGGING INTEGRATION MEASURE (only fully defined domains are enabled for now)\n", - "\n", - "\u001b[32m[2023-02-28 time=02:39:12] Flux r4 [AER (f)] scaled by 0.0016605390404271648 micrometer ** 3 * micromolar / molecule\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:12] Old flux units: 1.0 micrometer * micromolar / second\u001b[0m \u001b[97m\u001b[0m\n", - "dex not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in \u001b[32m[2023-02-28 time=02:39:12] New flux units: 1.0 micrometer * micromolar / second\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\n", - "DEBUGGING INTEGRATION MEASURE (only fully defined domains are enabled for now)\n", - "\u001b[32m[2023-02-28 time=02:39:12] Getting fluxes for reaction r3\u001b[0m \u001b[97m\u001b[0m\n", - "DEBUGGING INTEGRATION MEASURE (only fully defined domains are enabled for now)\n", - "DEBUGGING INTEGRATION MEASURE (only fully defined domains are enabled for now)\n", - "DEBUGGING INTEGRATION MEASURE (only fully defined domains are enabled for now)\n", - "DEBUGGING INTEGRATION MEASURE (only fully defined domains are enabled for now)\n", - "\n", - "\u001b[32m[2023-02-28 time=02:39:12] Flux r3 [B (f)] scaled by 0.0016605390404271648 micrometer ** 3 * micromolar / molecule\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:12] Old flux units: 1.0 micrometer * micromolar / second\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:12] New flux units: 1.0 micrometer * micromolar / second\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\n", - "DEBUGGING INTEGRATION MEASURE (only fully defined domains are enabled for now)\n", - "\n", - "\u001b[32m[2023-02-28 time=02:39:12] Flux r3 [B (r)] scaled by 0.0016605390404271648 micrometer ** 3 * micromolar / molecule\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:12] Old flux units: 1.0 micrometer * micromolar / second\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:12] New flux units: 1.0 micrometer * micromolar / second\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\n", - "DEBUGGING INTEGRATION MEASURE (only fully defined domains are enabled for now)\n", - "\u001b[32m[2023-02-28 time=02:39:12] Getting fluxes for reaction r2\u001b[0m \u001b[97m\u001b[0m\n", - "building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (88\u001b[32m[2023-02-28 time=02:39:12] Getting fluxes for reaction r1\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[32m[2023-02-28 time=02:39:12] Flux r1 [B (f)] scaled by 0.0016605390404271648 micrometer ** 3 * micromolar / molecule\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:12] Old flux units: 1.0 micrometer * micromolar / second\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:12] New flux units: 1.0 micrometer * micromolar / second\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\n", - "DEBUGGING INTEGRATION MEASURE (only fully defined domains are enabled for now)\n", - "\u001b[32m[2023-02-28 time=02:39:12] Creating functional forms\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:12] Compartment PM has no diffusive forms.\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m=======================================================================================================================\u001b[0m\n", - "\u001b[36m==============================\u001b[0m \u001b[35m[2023-02-28 time=02:39:12] Model finished initialization!\u001b[0m \u001b[36m==============================\u001b[0m\n", - "\u001b[36m=======================================================================================================================\u001b[0m\n", - "╒═════════╤═════════════════════════╤═════════════════════╤═════════════════════════════════╤═════════╤═════════╕\n", - "│ │ quantity │ is_time_dependent │ sym_expr │ notes │ group │\n", - "╞═════════╪═════════════════════════╪═════════════════════╪═════════════════════════════════╪═════════╪═════════╡\n", - "│ k4Vmax │ 2.00×10³ 1/s/µM │ False │ │ │ │\n", - "├─────────┼─────────────────────────┼─────────────────────┼─────────────────────────────────┼─────────┼─────────┤\n", - "│ k3r │ 1.00×10² 1/s │ False │ │ │ │\n", - "├─────────┼─────────────────────────┼─────────────────────┼─────────────────────────────────┼─────────┼─────────┤\n", - "│ k3f │ 1.00×10² 1/s/µM │ False │ │ │ │\n", - "├─────────┼─────────────────────────┼─────────────────────┼─────────────────────────────────┼─────────┼─────────┤\n", - "│ k2f │ 1.00×10¹ 1/s │ False │ │ │ │\n", - "├─────────┼─────────────────────────┼─────────────────────┼─────────────────────────────────┼─────────┼─────────┤\n", - "│ j1pulse │ 2.49×10² molecule/s/µm² │ True │ 100000/(40000*(t - 0.1)**2 + 1) │ │ │\n", - "╘═════════╧═════════════════════════╧═════════════════════╧═════════════════════════════════╧═════════╧═════════╛\n", - "╒═════╤════════════════════╤═════════════╤═════════════════╕\n", - "│ │ compartment_name │ dof_index │ Diffusion │\n", - "╞═════╪════════════════════╪═════════════╪═════════════════╡\n", - "│ R1o │ ERm │ 0 │ 2.00×10⁻² µm²/s │\n", - "├─────┼────────────────────┼─────────────┼─────────────────┤\n", - "│ R1 │ ERm │ 1 │ 2.00×10⁻² µm²/s │\n", - "├─────┼────────────────────┼─────────────┼─────────────────┤\n", - "│ AER │ ER │ 0 │ 5.00×10⁰ µm²/s │\n", - "├─────┼────────────────────┼─────────────┼─────────────────┤\n", - "│ B │ Cyto │ 0 │ 1.00×10⁰ µm²/s │\n", - "├─────┼────────────────────┼─────────────┼─────────────────┤\n", - "│ A │ Cyto │ 1 │ 1.00×10⁰ µm²/s │\n", - "╘═════╧════════════════════╧═════════════╧═════════════════╛\n", - "╒══════╤═══════════╤══════════════════╤═══════════════╤════════════════╤════════════╤══════════════════╤═════════════╤═══════════════╤═══════════════╕\n", - "│ │ mesh_id │ dimensionality │ num_species │ num_vertices │ num_dofs │ num_dofs_local │ num_cells │ cell_marker │ nvolume │\n", - "╞══════╪═══════════╪══════════════════╪═══════════════╪════════════════╪════════════╪══════════════════╪═════════════╪═══════════════╪═══════════════╡\n", - "│ ERm │ 8862 │ 2 │ 2 │ 218 │ 436 │ 436 │ 432 │ 12 │ 8.44×10⁻¹ µm² │\n", - "├──────┼───────────┼──────────────────┼───────────────┼────────────────┼────────────┼──────────────────┼─────────────┼───────────────┼───────────────┤\n", - "│ ER │ 8868 │ 3 │ 1 │ 343 │ 343 │ 343 │ 1296 │ 2 │ 5.27×10⁻² µm³ │\n", - "├──────┼───────────┼──────────────────┼───────────────┼────────────────┼────────────┼──────────────────┼─────────────┼───────────────┼───────────────┤\n", - "│ PM │ 8874 │ 2 │ 0 │ 289 │ 0 │ 0 │ 512 │ 10 │ 1.00×10⁰ µm² │\n", - "├──────┼───────────┼──────────────────┼───────────────┼────────────────┼────────────┼──────────────────┼─────────────┼───────────────┼───────────────┤\n", - "│ Cyto │ 8880 │ 3 │ 2 │ 4788 │ 9576 │ 9576 │ 23280 │ 1 │ 9.47×10⁻¹ µm³ │\n", - "╘══════╧═══════════╧══════════════════╧═══════════════╧════════════════╧════════════╧══════════════════╧═════════════╧═══════════════╧═══════════════╛\n", - "74, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not fou╒════╤═════════════╤══════╤══════════════════╤═════════════╤══════════════╤════════════════╕\n", - "│ │ name │ id │ dimensionality │ num_cells │ num_facets │ num_vertices │\n", - "╞════╪═════════════╪══════╪══════════════════╪═════════════╪══════════════╪════════════════╡\n", - "│ 0 │ parent_mesh │ 8848 │ 3 │ 24576 │ 50688 │ 4913 │\n", - "├────┼─────────────┼──────┼──────────────────┼─────────────┼──────────────┼────────────────┤\n", - "│ 1 │ ERm │ 8862 │ 2 │ 432 │ 648 │ 218 │\n", - "├────┼─────────────┼──────┼──────────────────┼─────────────┼──────────────┼────────────────┤\n", - "│ 2 │ ER │ 8868 │ 3 │ 1296 │ 2808 │ 343 │\n", - "├────┼─────────────┼──────┼──────────────────┼─────────────┼──────────────┼────────────────┤\n", - "│ 3 │ PM │ 8874 │ 2 │ 512 │ 0 │ 289 │\n", - "├────┼─────────────┼──────┼──────────────────┼─────────────┼──────────────┼────────────────┤\n", - "│ 4 │ Cyto │ 8880 │ 3 │ 23280 │ 48312 │ 4788 │\n", - "╘════╧═════════════╧══════╧══════════════════╧═════════════╧══════════════╧════════════════╛\n", - "╒════╤═════════════╤═════════╤═══════════════════════╤═════════════╕\n", - "│ │ lhs │ rhs │ eqn_f_str │ eqn_r_str │\n", - "╞════╪═════════════╪═════════╪═══════════════════════╪═════════════╡\n", - "│ r4 │ ['AER'] │ ['A'] │ R1o*k4Vmax*(-A + AER) │ │\n", - "├────┼─────────────┼─────────┼───────────────────────┼─────────────┤\n", - "│ r3 │ ['B', 'R1'] │ ['R1o'] │ k3f*B*R1 │ k3r*R1o │\n", - "├────┼─────────────┼─────────┼───────────────────────┼─────────────┤\n", - "│ r2 │ ['B'] │ [] │ k2f*B │ │\n", - "├────┼─────────────┼─────────┼───────────────────────┼─────────────┤\n", - "│ r1 │ [] │ ['B'] │ j1pulse │ │\n", - "╘════╧═════════════╧═════════╧═══════════════════════╧═════════════╛\n", - "\u001b[32m[2023-02-28 time=02:39:12] Formulating problem as F(u;v) == 0 for newton iterations\u001b[0m \u001b[97m\u001b[0m\n", - "nd.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not f\u001b[31m[2023-02-28 time=02:39:12] J01 = dF[ERm])/du[ER] is empty\u001b[0m \u001b[97m\u001b[0m\n" - ] - }, - { - "name": "stderr", - "output_type": "stream", - "text": [ - "/root/shared/stubs/model_assembly.py:1241: DeprecationWarning: Call to deprecated function stubs_expressions.\n", - " modules=common.stubs_expressions(gset[\"dolfin_expressions\"]),\n", - "/root/shared/stubs/model_assembly.py:1241: DeprecationWarning: Call to deprecated function stubs_expressions.\n", - " modules=common.stubs_expressions(gset[\"dolfin_expressions\"]),\n", - "/root/shared/stubs/model_assembly.py:1241: DeprecationWarning: Call to deprecated function stubs_expressions.\n", - " modules=common.stubs_expressions(gset[\"dolfin_expressions\"]),\n", - "/root/shared/stubs/model_assembly.py:1241: DeprecationWarning: Call to deprecated function stubs_expressions.\n", - " modules=common.stubs_expressions(gset[\"dolfin_expressions\"]),\n", - "/root/shared/stubs/model_assembly.py:1241: DeprecationWarning: Call to deprecated function stubs_expressions.\n", - " modules=common.stubs_expressions(gset[\"dolfin_expressions\"]),\n", - "/root/shared/stubs/model_assembly.py:1241: DeprecationWarning: Call to deprecated function stubs_expressions.\n", - " modules=common.stubs_expressions(gset[\"dolfin_expressions\"]),\n", - "/root/shared/stubs/model_assembly.py:1241: DeprecationWarning: Call to deprecated function stubs_expressions.\n", - " modules=common.stubs_expressions(gset[\"dolfin_expressions\"]),\n", - "/root/shared/stubs/model_assembly.py:1241: DeprecationWarning: Call to deprecated function stubs_expressions.\n", - " modules=common.stubs_expressions(gset[\"dolfin_expressions\"]),\n", - "/root/shared/stubs/model_assembly.py:1241: DeprecationWarning: Call to deprecated function stubs_expressions.\n", - " modules=common.stubs_expressions(gset[\"dolfin_expressions\"]),\n", - "/root/shared/stubs/model_assembly.py:1241: DeprecationWarning: Call to deprecated function stubs_expressions.\n", - " modules=common.stubs_expressions(gset[\"dolfin_expressions\"]),\n", - "/usr/lib/python3/dist-packages/pandas/core/dtypes/cast.py:1784: UnitStrippedWarning: The unit of the quantity is stripped when downcasting to ndarray.\n", - " result[:] = values\n", - "/root/shared/stubs/model_assembly.py:188: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", - " df = df.append(\n", - "/usr/lib/python3/dist-packages/pandas/core/dtypes/cast.py:1784: UnitStrippedWarning: The unit of the quantity is stripped when downcasting to ndarray.\n", - " result[:] = values\n", - "/root/shared/stubs/model_assembly.py:188: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", - " df = df.append(\n", - "/usr/lib/python3/dist-packages/pandas/core/dtypes/cast.py:1784: UnitStrippedWarning: The unit of the quantity is stripped when downcasting to ndarray.\n", - " result[:] = values\n", - "/root/shared/stubs/model_assembly.py:188: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", - " df = df.append(\n", - "/usr/lib/python3/dist-packages/pandas/core/dtypes/cast.py:1784: UnitStrippedWarning: The unit of the quantity is stripped when downcasting to ndarray.\n", - " result[:] = values\n", - "/root/shared/stubs/model_assembly.py:188: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", - " df = df.append(\n", - "/usr/lib/python3/dist-packages/pandas/core/dtypes/cast.py:1784: UnitStrippedWarning: The unit of the quantity is stripped when downcasting to ndarray.\n", - " result[:] = values\n", - "/root/shared/stubs/model_assembly.py:188: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", - " df = df.append(\n", - "/usr/lib/python3/dist-packages/pandas/core/dtypes/cast.py:1784: UnitStrippedWarning: The unit of the quantity is stripped when downcasting to ndarray.\n", - " result[:] = values\n", - "/root/shared/stubs/model_assembly.py:188: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", - " df = df.append(\n", - "/usr/lib/python3/dist-packages/pandas/core/dtypes/cast.py:1784: UnitStrippedWarning: The unit of the quantity is stripped when downcasting to ndarray.\n", - " result[:] = values\n", - "/root/shared/stubs/model_assembly.py:188: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", - " df = df.append(\n", - "/usr/lib/python3/dist-packages/pandas/core/dtypes/cast.py:1784: UnitStrippedWarning: The unit of the quantity is stripped when downcasting to ndarray.\n", - " result[:] = values\n", - "/root/shared/stubs/model_assembly.py:188: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", - " df = df.append(\n", - "/usr/lib/python3/dist-packages/pandas/core/dtypes/cast.py:1784: UnitStrippedWarning: The unit of the quantity is stripped when downcasting to ndarray.\n", - " result[:] = values\n", - "/root/shared/stubs/model_assembly.py:188: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", - " df = df.append(\n", - "/usr/lib/python3/dist-packages/pandas/core/dtypes/cast.py:1784: UnitStrippedWarning: The unit of the quantity is stripped when downcasting to ndarray.\n", - " result[:] = values\n", - "/root/shared/stubs/model_assembly.py:188: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", - " df = df.append(\n", - "/usr/lib/python3/dist-packages/pandas/core/dtypes/cast.py:1784: UnitStrippedWarning: The unit of the quantity is stripped when downcasting to ndarray.\n", - " result[:] = values\n", - "/root/shared/stubs/model_assembly.py:188: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", - " df = df.append(\n", - "/usr/lib/python3/dist-packages/pandas/core/dtypes/cast.py:1784: UnitStrippedWarning: The unit of the quantity is stripped when downcasting to ndarray.\n", - " result[:] = values\n", - "/root/shared/stubs/model_assembly.py:188: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", - " df = df.append(\n", - "/usr/lib/python3/dist-packages/pandas/core/dtypes/cast.py:1784: UnitStrippedWarning: The unit of the quantity is stripped when downcasting to ndarray.\n", - " result[:] = values\n", - "/root/shared/stubs/model_assembly.py:188: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", - " df = df.append(\n", - "/usr/lib/python3/dist-packages/pandas/core/dtypes/cast.py:1784: UnitStrippedWarning: The unit of the quantity is stripped when downcasting to ndarray.\n", - " result[:] = values\n", - "/root/shared/stubs/model_assembly.py:188: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", - " df = df.append(\n", - "/root/shared/stubs/model.py:2405: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", - " df = df.append(tempseries, ignore_index=True)\n", - "/root/shared/stubs/model.py:2412: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", - " df = df.append(tempseries, ignore_index=True)\n", - "/root/shared/stubs/model.py:2412: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", - " df = df.append(tempseries, ignore_index=True)\n", - "/root/shared/stubs/model.py:2412: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", - " df = df.append(tempseries, ignore_index=True)\n", - "/root/shared/stubs/model.py:2412: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", - " df = df.append(tempseries, ignore_index=True)\n", - "/root/shared/stubs/model_assembly.py:188: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", - " df = df.append(\n", - "/root/shared/stubs/model_assembly.py:188: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", - " df = df.append(\n", - "/root/shared/stubs/model_assembly.py:188: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", - " df = df.append(\n", - "/root/shared/stubs/model_assembly.py:188: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", - " df = df.append(\n" - ] - }, - { - "name": "stdout", - "output_type": "stream", - "text": [ - "ound.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building \u001b[32m[2023-02-28 time=02:39:12] Initial L2-norm of compartment ERm is 0.059164222265370874\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:12] Initial L2-norm of compartment ER is 0.0\u001b[0m \u001b[97m\u001b[0m\n", - "the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not\u001b[32m[2023-02-28 time=02:39:12] Initial L2-norm of compartment Cyto is 0.025073880749126056\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:12] Using SNES solver\u001b[0m \u001b[97m\u001b[0m\n", - " found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8\u001b[32m[2023-02-28 time=02:39:12] cpu 0: (ijk)=(0, 0, 0) (436, 436, 436, 436)\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:12] snes initialize zero matrices (iter 1) finished in 3.528594 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:12] cpu 0: (ijk)=(0, 2, 0) (436, 9576, 436, 9576)\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:12] cpu 0: (ijk)=(1, 0, 0) (343, 436, 343, 436)\u001b[0m \u001b[97m\u001b[0m\n", - "868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "E\u001b[32m[2023-02-28 time=02:39:12] cpu 0: (ijk)=(1, 1, 0) (343, 343, 343, 343)\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:12] cpu 0: (ijk)=(1, 1, 1) (343, 343, 343, 343)\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:12] cpu 0: (ijk)=(1, 2, 0) (343, 9576, 343, 9576)\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:12] cpu 0: (ijk)=(2, 0, 0) (9576, 436, 9576, 436)\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:12] cpu 0: (ijk)=(2, 1, 0) (9576, 343, 9576, 343)\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:12] cpu 0: (ijk)=(2, 2, 0) (9576, 9576, 9576, 9576)\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:12] cpu 0: (ijk)=(2, 2, 1) (9576, 9576, 9576, 9576)\u001b[0m \u001b[97m\u001b[0m\n", - "rror in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the map\n", - "\n", - "\n", - "\n", - "\n", - "\n", - "\n", - "\n", - "\n", - "Jpetsc_nest assembled, size = (10355, 10355)\n", - "ping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "Error in building the mapping (8874, 8868) :Index not found.\n", - "\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-28 time=02:39:12] Beginning time-step 1 [time=0.010000, dt=0.010000]\u001b[0m \u001b[36m....................\u001b[0m\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:12] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 277.00547618870814\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:12] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:13] snes residual assemble (iter 1) finished in 0.025827 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:13] snes jacobian assemble (iter 1) finished in 0.049693 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:13] snes residual assemble (iter 2) finished in 0.027988 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:13] snes jacobian assemble (iter 2) finished in 0.052976 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:13] snes residual assemble (iter 3) finished in 0.025901 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:13] snes jacobian assemble (iter 3) finished in 0.049153 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:13] snes residual assemble (iter 4) finished in 0.027663 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-28 time=02:39:13] Completed time-step 1 [time=0.010000, dt=0.010000]\u001b[0m \u001b[36m....................\u001b[0m\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:13] snes initialize zero matrices finished in 3.528594 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:13] snes jacobian assemble finished in 0.151823 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:13] snes residual assemble finished in 0.107380 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:13] snes total assemble finished in 0.259239 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:13] snes total solve finished in 0.256233 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:13] snes all finished in 0.515473 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:13] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:13] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:13] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:13] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:13] KSP residual norm: 5.945296455171196e-13\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:13] Total time step finished in 0.516293 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-28 time=02:39:13] Beginning time-step 2 [time=0.020000, dt=0.010000]\u001b[0m \u001b[36m....................\u001b[0m\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:13] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 346.0152375120174\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:13] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:13] snes residual assemble (iter 1) finished in 0.027795 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:13] snes jacobian assemble (iter 1) finished in 0.052284 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:13] snes residual assemble (iter 2) finished in 0.026683 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:13] snes jacobian assemble (iter 2) finished in 0.052616 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:13] snes residual assemble (iter 3) finished in 0.026797 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:13] snes jacobian assemble (iter 3) finished in 0.049901 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:14] snes residual assemble (iter 4) finished in 0.028185 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-28 time=02:39:14] Completed time-step 2 [time=0.020000, dt=0.010000]\u001b[0m \u001b[36m....................\u001b[0m\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:14] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:14] snes jacobian assemble finished in 0.154803 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:14] snes residual assemble finished in 0.109461 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:14] snes total assemble finished in 0.264265 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:14] snes total solve finished in 0.280950 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:14] snes all finished in 0.545215 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:14] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:14] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:14] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:14] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:14] KSP residual norm: 1.3398118572830607e-12\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:14] Total time step finished in 0.546035 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-28 time=02:39:14] Beginning time-step 3 [time=0.030000, dt=0.010000]\u001b[0m \u001b[36m....................\u001b[0m\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:14] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 444.4327394666516\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:14] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:14] snes residual assemble (iter 1) finished in 0.029858 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:14] snes jacobian assemble (iter 1) finished in 0.059573 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:14] snes residual assemble (iter 2) finished in 0.029618 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:14] snes jacobian assemble (iter 2) finished in 0.055803 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:14] snes residual assemble (iter 3) finished in 0.029375 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:14] snes jacobian assemble (iter 3) finished in 0.054504 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:14] snes residual assemble (iter 4) finished in 0.029625 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-28 time=02:39:14] Completed time-step 3 [time=0.030000, dt=0.010000]\u001b[0m \u001b[36m....................\u001b[0m\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:14] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:14] snes jacobian assemble finished in 0.169881 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:14] snes residual assemble finished in 0.118478 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:14] snes total assemble finished in 0.288359 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:14] snes total solve finished in 0.326288 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:14] snes all finished in 0.614648 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:14] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:14] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:14] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:14] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:14] KSP residual norm: 2.121315296824693e-12\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:14] Total time step finished in 0.615785 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-28 time=02:39:14] Beginning time-step 4 [time=0.040000, dt=0.010000]\u001b[0m \u001b[36m....................\u001b[0m\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:14] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 591.6883551575438\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:14] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:14] snes residual assemble (iter 1) finished in 0.030361 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:14] snes jacobian assemble (iter 1) finished in 0.053909 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:14] snes residual assemble (iter 2) finished in 0.028610 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:14] snes jacobian assemble (iter 2) finished in 0.054620 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:15] snes residual assemble (iter 3) finished in 0.027008 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:15] snes jacobian assemble (iter 3) finished in 0.052233 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:15] snes residual assemble (iter 4) finished in 0.027249 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-28 time=02:39:15] Completed time-step 4 [time=0.040000, dt=0.010000]\u001b[0m \u001b[36m....................\u001b[0m\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:15] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:15] snes jacobian assemble finished in 0.160763 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:15] snes residual assemble finished in 0.113229 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:15] snes total assemble finished in 0.273993 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:15] snes total solve finished in 0.289645 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:15] snes all finished in 0.563638 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:15] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:15] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:15] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:15] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:15] KSP residual norm: 2.7356353237777675e-12\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:15] Total time step finished in 0.564601 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-28 time=02:39:15] Beginning time-step 5 [time=0.050000, dt=0.010000]\u001b[0m \u001b[36m....................\u001b[0m\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:15] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 826.3710301360334\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:15] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:15] snes residual assemble (iter 1) finished in 0.027115 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:15] snes jacobian assemble (iter 1) finished in 0.053401 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:15] snes residual assemble (iter 2) finished in 0.026459 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:15] snes jacobian assemble (iter 2) finished in 0.050836 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:15] snes residual assemble (iter 3) finished in 0.026943 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:15] snes jacobian assemble (iter 3) finished in 0.052779 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:15] snes residual assemble (iter 4) finished in 0.026449 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-28 time=02:39:15] Completed time-step 5 [time=0.050000, dt=0.010000]\u001b[0m \u001b[36m....................\u001b[0m\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:15] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:15] snes jacobian assemble finished in 0.157018 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:15] snes residual assemble finished in 0.106966 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:15] snes total assemble finished in 0.263985 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:15] snes total solve finished in 0.292840 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:15] snes all finished in 0.556825 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:15] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:15] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:15] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:15] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:15] KSP residual norm: 2.147080073185055e-14\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:15] Total time step finished in 0.557642 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-28 time=02:39:15] Beginning time-step 6 [time=0.060000, dt=0.010000]\u001b[0m \u001b[36m....................\u001b[0m\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:15] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 1234.3171027799826\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:15] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:15] snes residual assemble (iter 1) finished in 0.027140 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:15] snes jacobian assemble (iter 1) finished in 0.052490 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:16] snes residual assemble (iter 2) finished in 0.026996 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:16] snes jacobian assemble (iter 2) finished in 0.051388 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:16] snes residual assemble (iter 3) finished in 0.027221 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:16] snes jacobian assemble (iter 3) finished in 0.051770 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:16] snes residual assemble (iter 4) finished in 0.026795 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-28 time=02:39:16] Completed time-step 6 [time=0.060000, dt=0.010000]\u001b[0m \u001b[36m....................\u001b[0m\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:16] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:16] snes jacobian assemble finished in 0.155650 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:16] snes residual assemble finished in 0.108153 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:16] snes total assemble finished in 0.263803 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:16] snes total solve finished in 0.277058 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:16] snes all finished in 0.540861 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:16] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:16] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:16] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:16] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:16] KSP residual norm: 5.883957929928724e-15\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:16] Total time step finished in 0.541694 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-28 time=02:39:16] Beginning time-step 7 [time=0.070000, dt=0.010000]\u001b[0m \u001b[36m....................\u001b[0m\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:16] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 2039.684143393265\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:16] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:16] snes residual assemble (iter 1) finished in 0.029603 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:16] snes jacobian assemble (iter 1) finished in 0.048494 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:16] snes residual assemble (iter 2) finished in 0.026107 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:16] snes jacobian assemble (iter 2) finished in 0.049849 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:16] snes residual assemble (iter 3) finished in 0.025973 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:16] snes jacobian assemble (iter 3) finished in 0.050222 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:16] snes residual assemble (iter 4) finished in 0.026358 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:16] snes jacobian assemble (iter 4) finished in 0.051058 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:17] snes residual assemble (iter 5) finished in 0.025955 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-28 time=02:39:17] Completed time-step 7 [time=0.070000, dt=0.010000]\u001b[0m \u001b[36m....................\u001b[0m\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:17] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:17] snes jacobian assemble finished in 0.199625 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:17] snes residual assemble finished in 0.133997 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:17] snes total assemble finished in 0.333623 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:17] snes total solve finished in 0.331058 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:17] snes all finished in 0.664681 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:17] Non-linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:17] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:17] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:17] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:17] KSP residual norm: 2.4150439760536233e-17\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:17] Total time step finished in 0.665376 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-28 time=02:39:17] Beginning time-step 8 [time=0.080000, dt=0.010000]\u001b[0m \u001b[36m....................\u001b[0m\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:17] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 3991.49928561186\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:17] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:17] snes residual assemble (iter 1) finished in 0.026235 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:17] snes jacobian assemble (iter 1) finished in 0.052284 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:17] snes residual assemble (iter 2) finished in 0.027089 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:17] snes jacobian assemble (iter 2) finished in 0.052402 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:17] snes residual assemble (iter 3) finished in 0.027418 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:17] snes jacobian assemble (iter 3) finished in 0.050242 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:17] snes residual assemble (iter 4) finished in 0.025734 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:17] snes jacobian assemble (iter 4) finished in 0.049615 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:17] snes residual assemble (iter 5) finished in 0.026717 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-28 time=02:39:17] Completed time-step 8 [time=0.080000, dt=0.010000]\u001b[0m \u001b[36m....................\u001b[0m\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:17] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:17] snes jacobian assemble finished in 0.204545 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:17] snes residual assemble finished in 0.133195 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:17] snes total assemble finished in 0.337741 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:17] snes total solve finished in 0.335481 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:17] snes all finished in 0.673222 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:17] Non-linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:17] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:17] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:17] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:17] KSP residual norm: 1.8993749949044448e-14\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:17] Total time step finished in 0.673880 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-28 time=02:39:17] Beginning time-step 9 [time=0.090000, dt=0.010000]\u001b[0m \u001b[36m....................\u001b[0m\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:17] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 10933.44729369711\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:17] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:17] snes residual assemble (iter 1) finished in 0.029005 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:17] snes jacobian assemble (iter 1) finished in 0.053595 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:17] snes residual assemble (iter 2) finished in 0.027632 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:18] snes jacobian assemble (iter 2) finished in 0.051510 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:18] snes residual assemble (iter 3) finished in 0.028899 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:18] snes jacobian assemble (iter 3) finished in 0.055023 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:18] snes residual assemble (iter 4) finished in 0.045975 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:18] snes jacobian assemble (iter 4) finished in 0.051654 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:18] snes residual assemble (iter 5) finished in 0.026747 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-28 time=02:39:18] Completed time-step 9 [time=0.090000, dt=0.010000]\u001b[0m \u001b[36m....................\u001b[0m\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:18] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:18] snes jacobian assemble finished in 0.211784 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:18] snes residual assemble finished in 0.158261 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:18] snes total assemble finished in 0.370045 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:18] snes total solve finished in 0.380738 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:18] snes all finished in 0.750783 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:18] Non-linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:18] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:18] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:18] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:18] KSP residual norm: 1.6914556655168534e-13\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:18] Total time step finished in 0.751528 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:18] Beginning time-step 10 [time=0.100000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:18] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 55357.43588970452\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:18] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:18] snes residual assemble (iter 1) finished in 0.027373 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:18] snes jacobian assemble (iter 1) finished in 0.054801 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:18] snes residual assemble (iter 2) finished in 0.028790 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:18] snes jacobian assemble (iter 2) finished in 0.052476 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:18] snes residual assemble (iter 3) finished in 0.027876 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:18] snes jacobian assemble (iter 3) finished in 0.056250 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:19] snes residual assemble (iter 4) finished in 0.028356 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:19] snes jacobian assemble (iter 4) finished in 0.053586 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:19] snes residual assemble (iter 5) finished in 0.027291 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:19] Completed time-step 10 [time=0.100000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:19] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:19] snes jacobian assemble finished in 0.217114 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:19] snes residual assemble finished in 0.139688 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:19] snes total assemble finished in 0.356803 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:19] snes total solve finished in 0.393735 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:19] snes all finished in 0.750538 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:19] Non-linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:19] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:19] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:19] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:19] KSP residual norm: 2.7151692062349364e-11\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:19] Total time step finished in 0.751244 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:19] Beginning time-step 11 [time=0.110000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:19] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 55357.43588970452\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:19] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:19] snes residual assemble (iter 1) finished in 0.028134 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:19] snes jacobian assemble (iter 1) finished in 0.055076 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:19] snes residual assemble (iter 2) finished in 0.029557 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:19] snes jacobian assemble (iter 2) finished in 0.055941 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:19] snes residual assemble (iter 3) finished in 0.029980 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:19] snes jacobian assemble (iter 3) finished in 0.056646 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:19] snes residual assemble (iter 4) finished in 0.030915 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:19] snes jacobian assemble (iter 4) finished in 0.052277 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:20] snes residual assemble (iter 5) finished in 0.027280 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:20] snes jacobian assemble (iter 5) finished in 0.052575 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:20] snes residual assemble (iter 6) finished in 0.027576 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:20] Completed time-step 11 [time=0.110000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:20] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:20] snes jacobian assemble finished in 0.272518 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:20] snes residual assemble finished in 0.173445 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:20] snes total assemble finished in 0.445963 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:20] snes total solve finished in 0.510991 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:20] snes all finished in 0.956955 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:20] Non-linear solver iterations: 5\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:20] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:20] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:20] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:20] KSP residual norm: 2.154663579101259e-14\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:20] Total time step finished in 0.957788 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:20] Beginning time-step 12 [time=0.120000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:20] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 10933.44729369711\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:20] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:20] snes residual assemble (iter 1) finished in 0.029134 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:20] snes jacobian assemble (iter 1) finished in 0.056206 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:20] snes residual assemble (iter 2) finished in 0.028349 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:20] snes jacobian assemble (iter 2) finished in 0.050130 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:20] snes residual assemble (iter 3) finished in 0.026589 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:20] snes jacobian assemble (iter 3) finished in 0.051342 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:20] snes residual assemble (iter 4) finished in 0.027930 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:20] snes jacobian assemble (iter 4) finished in 0.052858 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:20] snes residual assemble (iter 5) finished in 0.027477 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:21] snes jacobian assemble (iter 5) finished in 0.053606 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:21] snes residual assemble (iter 6) finished in 0.026463 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:21] Completed time-step 12 [time=0.120000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:21] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:21] snes jacobian assemble finished in 0.264144 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:21] snes residual assemble finished in 0.165945 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:21] snes total assemble finished in 0.430090 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:21] snes total solve finished in 0.496320 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:21] snes all finished in 0.926411 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:21] Non-linear solver iterations: 5\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:21] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:21] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:21] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:21] KSP residual norm: 3.0025851794818706e-13\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:21] Total time step finished in 0.927195 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:21] Beginning time-step 13 [time=0.130000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:21] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 3991.4992856118715\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:21] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:21] snes residual assemble (iter 1) finished in 0.026614 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:21] snes jacobian assemble (iter 1) finished in 0.051476 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:21] snes residual assemble (iter 2) finished in 0.027200 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:21] snes jacobian assemble (iter 2) finished in 0.051719 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:21] snes residual assemble (iter 3) finished in 0.027469 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:21] snes jacobian assemble (iter 3) finished in 0.051859 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:21] snes residual assemble (iter 4) finished in 0.027085 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:21] snes jacobian assemble (iter 4) finished in 0.052239 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:21] snes residual assemble (iter 5) finished in 0.027316 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:21] snes jacobian assemble (iter 5) finished in 0.053132 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:22] snes residual assemble (iter 6) finished in 0.026991 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:22] Completed time-step 13 [time=0.130000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:22] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:22] snes jacobian assemble finished in 0.260426 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:22] snes residual assemble finished in 0.162678 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:22] snes total assemble finished in 0.423105 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:22] snes total solve finished in 0.460647 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:22] snes all finished in 0.883752 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:22] Non-linear solver iterations: 5\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:22] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:22] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:22] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:22] KSP residual norm: 4.4704885115408854e-14\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:22] Total time step finished in 0.884454 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:22] Beginning time-step 14 [time=0.140000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:22] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 2039.684143393265\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:22] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:22] snes residual assemble (iter 1) finished in 0.026864 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:22] snes jacobian assemble (iter 1) finished in 0.051744 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:22] snes residual assemble (iter 2) finished in 0.027717 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:22] snes jacobian assemble (iter 2) finished in 0.051868 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:22] snes residual assemble (iter 3) finished in 0.026784 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:22] snes jacobian assemble (iter 3) finished in 0.051354 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:22] snes residual assemble (iter 4) finished in 0.030099 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:22] snes jacobian assemble (iter 4) finished in 0.052639 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:22] snes residual assemble (iter 5) finished in 0.026617 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:22] Completed time-step 14 [time=0.140000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:22] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:22] snes jacobian assemble finished in 0.207606 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:22] snes residual assemble finished in 0.138083 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:22] snes total assemble finished in 0.345690 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:22] snes total solve finished in 0.423064 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:22] snes all finished in 0.768754 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:22] Non-linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:22] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:22] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:22] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:22] KSP residual norm: 6.752136621673154e-14\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:22] Total time step finished in 0.769532 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:22] Beginning time-step 15 [time=0.150000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:22] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 1234.3171027799713\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:22] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:22] snes residual assemble (iter 1) finished in 0.027157 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:22] snes jacobian assemble (iter 1) finished in 0.053984 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:23] snes residual assemble (iter 2) finished in 0.026590 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:23] snes jacobian assemble (iter 2) finished in 0.052159 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:23] snes residual assemble (iter 3) finished in 0.027695 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:23] snes jacobian assemble (iter 3) finished in 0.059972 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:23] snes residual assemble (iter 4) finished in 0.027578 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:23] snes jacobian assemble (iter 4) finished in 0.052938 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:23] snes residual assemble (iter 5) finished in 0.027442 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:23] Completed time-step 15 [time=0.150000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:23] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:23] snes jacobian assemble finished in 0.219055 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:23] snes residual assemble finished in 0.136465 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:23] snes total assemble finished in 0.355520 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:23] snes total solve finished in 0.385091 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:23] snes all finished in 0.740612 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:23] Non-linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:23] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:23] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:23] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:23] KSP residual norm: 2.645426022757027e-12\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:23] Total time step finished in 0.741315 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:23] Beginning time-step 16 [time=0.160000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:23] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 826.3710301360334\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:23] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:23] snes residual assemble (iter 1) finished in 0.028182 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:23] snes jacobian assemble (iter 1) finished in 0.053669 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:23] snes residual assemble (iter 2) finished in 0.027796 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:23] snes jacobian assemble (iter 2) finished in 0.052692 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:23] snes residual assemble (iter 3) finished in 0.030399 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:24] snes jacobian assemble (iter 3) finished in 0.051987 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:24] snes residual assemble (iter 4) finished in 0.027149 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:24] snes jacobian assemble (iter 4) finished in 0.052839 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:24] snes residual assemble (iter 5) finished in 0.027949 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:24] Completed time-step 16 [time=0.160000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:24] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:24] snes jacobian assemble finished in 0.211189 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:24] snes residual assemble finished in 0.141477 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:24] snes total assemble finished in 0.352667 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:24] snes total solve finished in 0.381071 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:24] snes all finished in 0.733738 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:24] Non-linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:24] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:24] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:24] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:24] KSP residual norm: 2.647353156334168e-12\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:24] Total time step finished in 0.734565 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:24] Beginning time-step 17 [time=0.170000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:24] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 591.6883551575438\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:24] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:24] snes residual assemble (iter 1) finished in 0.027449 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:24] snes jacobian assemble (iter 1) finished in 0.053388 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:24] snes residual assemble (iter 2) finished in 0.027963 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:24] snes jacobian assemble (iter 2) finished in 0.052791 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:24] snes residual assemble (iter 3) finished in 0.027313 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:24] snes jacobian assemble (iter 3) finished in 0.052354 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:24] snes residual assemble (iter 4) finished in 0.027400 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:24] snes jacobian assemble (iter 4) finished in 0.052915 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:25] snes residual assemble (iter 5) finished in 0.027386 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:25] Completed time-step 17 [time=0.170000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:25] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:25] snes jacobian assemble finished in 0.211450 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:25] snes residual assemble finished in 0.137513 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:25] snes total assemble finished in 0.348963 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:25] snes total solve finished in 0.385212 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:25] snes all finished in 0.734176 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:25] Non-linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:25] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:25] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:25] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:25] KSP residual norm: 2.3766260486552772e-12\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:25] Total time step finished in 0.734872 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:25] Beginning time-step 18 [time=0.180000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:25] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 444.4327394666516\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:25] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:25] snes residual assemble (iter 1) finished in 0.028668 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:25] snes jacobian assemble (iter 1) finished in 0.053179 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:25] snes residual assemble (iter 2) finished in 0.027295 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:25] snes jacobian assemble (iter 2) finished in 0.052720 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:25] snes residual assemble (iter 3) finished in 0.027634 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:25] snes jacobian assemble (iter 3) finished in 0.057699 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:25] snes residual assemble (iter 4) finished in 0.027553 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:25] snes jacobian assemble (iter 4) finished in 0.052594 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:25] snes residual assemble (iter 5) finished in 0.027324 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:25] Completed time-step 18 [time=0.180000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:25] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:25] snes jacobian assemble finished in 0.216193 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:25] snes residual assemble finished in 0.138475 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:25] snes total assemble finished in 0.354669 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:25] snes total solve finished in 0.383817 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:25] snes all finished in 0.738487 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:25] Non-linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:25] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:25] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:25] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:25] KSP residual norm: 1.8542541469384584e-12\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:25] Total time step finished in 0.739245 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:25] Beginning time-step 19 [time=0.190000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:25] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 346.0152375120174\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:25] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:25] snes residual assemble (iter 1) finished in 0.027954 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:25] snes jacobian assemble (iter 1) finished in 0.053038 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:26] snes residual assemble (iter 2) finished in 0.028092 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:26] snes jacobian assemble (iter 2) finished in 0.050070 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:26] snes residual assemble (iter 3) finished in 0.027065 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:26] snes jacobian assemble (iter 3) finished in 0.051071 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:26] snes residual assemble (iter 4) finished in 0.027792 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:26] snes jacobian assemble (iter 4) finished in 0.052209 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:26] snes residual assemble (iter 5) finished in 0.026519 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:26] Completed time-step 19 [time=0.190000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:26] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:26] snes jacobian assemble finished in 0.206390 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:26] snes residual assemble finished in 0.137424 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:26] snes total assemble finished in 0.343814 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:26] snes total solve finished in 0.386954 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:26] snes all finished in 0.730769 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:26] Non-linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:26] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:26] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:26] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:26] KSP residual norm: 1.4974826319368577e-12\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:26] Total time step finished in 0.731460 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:26] Beginning time-step 20 [time=0.200000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:26] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 277.00547618870814\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:26] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:26] snes residual assemble (iter 1) finished in 0.026736 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:26] snes jacobian assemble (iter 1) finished in 0.052780 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:26] snes residual assemble (iter 2) finished in 0.026744 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:26] snes jacobian assemble (iter 2) finished in 0.051255 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:26] snes residual assemble (iter 3) finished in 0.027271 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:26] snes jacobian assemble (iter 3) finished in 0.052186 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:27] snes residual assemble (iter 4) finished in 0.026901 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:27] snes jacobian assemble (iter 4) finished in 0.051676 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:27] snes residual assemble (iter 5) finished in 0.027958 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:27] Completed time-step 20 [time=0.200000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:27] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:27] snes jacobian assemble finished in 0.207899 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:27] snes residual assemble finished in 0.135613 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:27] snes total assemble finished in 0.343512 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:27] snes total solve finished in 0.366283 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:27] snes all finished in 0.709795 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:27] Non-linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:27] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:27] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:27] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:27] KSP residual norm: 1.2263590991708265e-12\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:27] Total time step finished in 0.710568 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:27] Beginning time-step 21 [time=0.210000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:27] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 226.75581501829356\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:27] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:27] snes residual assemble (iter 1) finished in 0.026770 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:27] snes jacobian assemble (iter 1) finished in 0.053339 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:27] snes residual assemble (iter 2) finished in 0.026751 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:27] snes jacobian assemble (iter 2) finished in 0.051525 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:27] snes residual assemble (iter 3) finished in 0.028375 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:27] snes jacobian assemble (iter 3) finished in 0.050535 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:27] snes residual assemble (iter 4) finished in 0.027601 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:27] snes jacobian assemble (iter 4) finished in 0.053434 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:28] snes residual assemble (iter 5) finished in 0.028752 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:28] Completed time-step 21 [time=0.210000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:28] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:28] snes jacobian assemble finished in 0.208835 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:28] snes residual assemble finished in 0.138251 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:28] snes total assemble finished in 0.347086 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:28] snes total solve finished in 0.370460 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:28] snes all finished in 0.717547 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:28] Non-linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:28] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:28] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:28] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:28] KSP residual norm: 1.022554680276151e-12\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:28] Total time step finished in 0.718360 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:28] Beginning time-step 22 [time=0.220000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:28] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 189.03501614942115\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:28] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:28] snes residual assemble (iter 1) finished in 0.028104 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:28] snes jacobian assemble (iter 1) finished in 0.054111 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:28] snes residual assemble (iter 2) finished in 0.028154 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:28] snes jacobian assemble (iter 2) finished in 0.053657 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:28] snes residual assemble (iter 3) finished in 0.027667 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:28] snes jacobian assemble (iter 3) finished in 0.053521 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:28] snes residual assemble (iter 4) finished in 0.028245 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:28] snes jacobian assemble (iter 4) finished in 0.054236 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:28] snes residual assemble (iter 5) finished in 0.026467 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:28] Completed time-step 22 [time=0.220000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:28] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:28] snes jacobian assemble finished in 0.215527 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:28] snes residual assemble finished in 0.138638 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:28] snes total assemble finished in 0.354166 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:28] snes total solve finished in 0.372948 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:28] snes all finished in 0.727114 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:28] Non-linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:28] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:28] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:28] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:28] KSP residual norm: 8.452092570000453e-13\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:28] Total time step finished in 0.727800 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:28] Beginning time-step 23 [time=0.230000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:28] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 159.999453870023\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:28] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:28] snes residual assemble (iter 1) finished in 0.026891 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:28] snes jacobian assemble (iter 1) finished in 0.051857 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:28] snes residual assemble (iter 2) finished in 0.027210 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:29] snes jacobian assemble (iter 2) finished in 0.051464 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:29] snes residual assemble (iter 3) finished in 0.026472 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:29] snes jacobian assemble (iter 3) finished in 0.052490 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:29] snes residual assemble (iter 4) finished in 0.027773 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:29] snes jacobian assemble (iter 4) finished in 0.052556 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:29] snes residual assemble (iter 5) finished in 0.027598 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:29] Completed time-step 23 [time=0.230000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:29] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:29] snes jacobian assemble finished in 0.208368 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:29] snes residual assemble finished in 0.135947 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:29] snes total assemble finished in 0.344315 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:29] snes total solve finished in 0.364099 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:29] snes all finished in 0.708415 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:29] Non-linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:29] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:29] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:29] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:29] KSP residual norm: 7.029267719534019e-13\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:29] Total time step finished in 0.709178 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:29] Beginning time-step 24 [time=0.240000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:29] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 137.17386709321318\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:29] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:29] snes residual assemble (iter 1) finished in 0.027990 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:29] snes jacobian assemble (iter 1) finished in 0.053594 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:29] snes residual assemble (iter 2) finished in 0.030899 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:29] snes jacobian assemble (iter 2) finished in 0.054186 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:29] snes residual assemble (iter 3) finished in 0.028296 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:29] snes jacobian assemble (iter 3) finished in 0.058149 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:30] snes residual assemble (iter 4) finished in 0.026268 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:30] snes jacobian assemble (iter 4) finished in 0.051912 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:30] snes residual assemble (iter 5) finished in 0.026532 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:30] Completed time-step 24 [time=0.240000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:30] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:30] snes jacobian assemble finished in 0.217842 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:30] snes residual assemble finished in 0.139987 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:30] snes total assemble finished in 0.357830 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:30] snes total solve finished in 0.396294 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:30] snes all finished in 0.754124 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:30] Non-linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:30] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:30] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:30] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:30] KSP residual norm: 5.84448841292691e-13\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:30] Total time step finished in 0.754828 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:30] Beginning time-step 25 [time=0.250000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:30] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 118.90584005383289\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:30] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:30] snes residual assemble (iter 1) finished in 0.027544 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:30] snes jacobian assemble (iter 1) finished in 0.051726 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:30] snes residual assemble (iter 2) finished in 0.026632 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:30] snes jacobian assemble (iter 2) finished in 0.051883 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:30] snes residual assemble (iter 3) finished in 0.026790 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:30] snes jacobian assemble (iter 3) finished in 0.052790 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:30] snes residual assemble (iter 4) finished in 0.026909 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:30] snes jacobian assemble (iter 4) finished in 0.060464 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:30] snes residual assemble (iter 5) finished in 0.037384 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:30] Completed time-step 25 [time=0.250000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:30] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:30] snes jacobian assemble finished in 0.216865 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:30] snes residual assemble finished in 0.145261 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:30] snes total assemble finished in 0.362127 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:30] snes total solve finished in 0.384164 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:30] snes all finished in 0.746291 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:30] Non-linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:30] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:30] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:30] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:30] KSP residual norm: 4.836238906681229e-13\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:30] Total time step finished in 0.747167 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:30] Beginning time-step 26 [time=0.260000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:30] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 104.05812239894203\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:30] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:31] snes residual assemble (iter 1) finished in 0.033237 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:31] snes jacobian assemble (iter 1) finished in 0.052451 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:31] snes residual assemble (iter 2) finished in 0.028097 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:31] snes jacobian assemble (iter 2) finished in 0.052171 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:31] snes residual assemble (iter 3) finished in 0.027114 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:31] snes jacobian assemble (iter 3) finished in 0.051960 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:31] snes residual assemble (iter 4) finished in 0.027687 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:31] snes jacobian assemble (iter 4) finished in 0.052662 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:31] snes residual assemble (iter 5) finished in 0.033490 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:31] Completed time-step 26 [time=0.260000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:31] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:31] snes jacobian assemble finished in 0.209246 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:31] snes residual assemble finished in 0.149627 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:31] snes total assemble finished in 0.358873 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:31] snes total solve finished in 0.389530 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:31] snes all finished in 0.748404 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:31] Non-linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:31] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:31] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:31] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:31] KSP residual norm: 3.9695403104641764e-13\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:31] Total time step finished in 0.749380 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:31] Beginning time-step 27 [time=0.270000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:31] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 91.82726131316485\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:31] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:31] snes residual assemble (iter 1) finished in 0.029329 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:31] snes jacobian assemble (iter 1) finished in 0.053317 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:31] snes residual assemble (iter 2) finished in 0.028339 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:32] snes jacobian assemble (iter 2) finished in 0.053577 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:32] snes residual assemble (iter 3) finished in 0.026851 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:32] snes jacobian assemble (iter 3) finished in 0.051940 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:32] snes residual assemble (iter 4) finished in 0.026900 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:32] snes jacobian assemble (iter 4) finished in 0.051962 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:32] snes residual assemble (iter 5) finished in 0.027108 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:32] Completed time-step 27 [time=0.270000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:32] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:32] snes jacobian assemble finished in 0.210798 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:32] snes residual assemble finished in 0.138530 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:32] snes total assemble finished in 0.349328 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:32] snes total solve finished in 0.363033 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:32] snes all finished in 0.712361 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:32] Non-linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:32] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:32] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:32] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:32] KSP residual norm: 3.226212106586519e-13\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:32] Total time step finished in 0.713139 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:32] Beginning time-step 28 [time=0.280000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:32] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 81.63258052919673\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:32] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:32] snes residual assemble (iter 1) finished in 0.026363 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:32] snes jacobian assemble (iter 1) finished in 0.051690 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:32] snes residual assemble (iter 2) finished in 0.033046 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:32] snes jacobian assemble (iter 2) finished in 0.052551 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:32] snes residual assemble (iter 3) finished in 0.027283 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:32] snes jacobian assemble (iter 3) finished in 0.053231 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:33] snes residual assemble (iter 4) finished in 0.027585 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:33] snes jacobian assemble (iter 4) finished in 0.052395 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:33] snes residual assemble (iter 5) finished in 0.030784 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:33] Completed time-step 28 [time=0.280000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:33] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:33] snes jacobian assemble finished in 0.209869 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:33] snes residual assemble finished in 0.145063 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:33] snes total assemble finished in 0.354933 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:33] snes total solve finished in 0.390086 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:33] snes all finished in 0.745019 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:33] Non-linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:33] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:33] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:33] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:33] KSP residual norm: 2.5949701165266665e-13\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:33] Total time step finished in 0.745736 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:33] Beginning time-step 29 [time=0.290000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:33] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 73.04596702495019\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:33] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:33] snes residual assemble (iter 1) finished in 0.028360 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:33] snes jacobian assemble (iter 1) finished in 0.052860 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:33] snes residual assemble (iter 2) finished in 0.027887 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:33] snes jacobian assemble (iter 2) finished in 0.059184 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:33] snes residual assemble (iter 3) finished in 0.028402 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:33] snes jacobian assemble (iter 3) finished in 0.054167 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:33] snes residual assemble (iter 4) finished in 0.028116 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:33] snes jacobian assemble (iter 4) finished in 0.053648 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:34] snes residual assemble (iter 5) finished in 0.028662 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:34] Completed time-step 29 [time=0.290000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:34] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:34] snes jacobian assemble finished in 0.219860 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:34] snes residual assemble finished in 0.141429 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:34] snes total assemble finished in 0.361289 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:34] snes total solve finished in 0.409219 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:34] snes all finished in 0.770509 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:34] Non-linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:34] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:34] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:34] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:34] KSP residual norm: 2.0594467010492146e-13\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:34] Total time step finished in 0.771310 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:34] Beginning time-step 30 [time=0.300000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:34] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 65.74618170009217\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:34] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:34] snes residual assemble (iter 1) finished in 0.028662 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:34] snes jacobian assemble (iter 1) finished in 0.054909 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:34] snes residual assemble (iter 2) finished in 0.025718 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:34] snes jacobian assemble (iter 2) finished in 0.056311 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:34] snes residual assemble (iter 3) finished in 0.027038 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:34] snes jacobian assemble (iter 3) finished in 0.052264 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:34] snes residual assemble (iter 4) finished in 0.036781 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:34] snes jacobian assemble (iter 4) finished in 0.060428 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:34] snes residual assemble (iter 5) finished in 0.029216 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:34] Completed time-step 30 [time=0.300000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:34] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:34] snes jacobian assemble finished in 0.223913 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:34] snes residual assemble finished in 0.147418 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:34] snes total assemble finished in 0.371332 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:34] snes total solve finished in 0.411554 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:34] snes all finished in 0.782886 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:34] Non-linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:34] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:34] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:34] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:34] KSP residual norm: 1.6057412692633598e-13\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:34] Total time step finished in 0.783644 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:34] Beginning time-step 31 [time=0.310000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:34] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 59.488371692509645\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:34] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:34] snes residual assemble (iter 1) finished in 0.033705 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:34] snes jacobian assemble (iter 1) finished in 0.058806 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:35] snes residual assemble (iter 2) finished in 0.028203 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:35] snes jacobian assemble (iter 2) finished in 0.052835 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:35] snes residual assemble (iter 3) finished in 0.027240 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:35] snes jacobian assemble (iter 3) finished in 0.053517 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:35] snes residual assemble (iter 4) finished in 0.032579 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:35] snes jacobian assemble (iter 4) finished in 0.053242 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:35] snes residual assemble (iter 5) finished in 0.027432 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:35] Completed time-step 31 [time=0.310000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:35] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:35] snes jacobian assemble finished in 0.218402 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:35] snes residual assemble finished in 0.149161 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:35] snes total assemble finished in 0.367564 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:35] snes total solve finished in 0.373803 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:35] snes all finished in 0.741368 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:35] Non-linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:35] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:35] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:35] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:35] KSP residual norm: 1.2196238244310764e-13\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:35] Total time step finished in 0.742210 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:35] Beginning time-step 32 [time=0.320000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:35] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 54.083267171449734\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:35] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:35] snes residual assemble (iter 1) finished in 0.027080 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:35] snes jacobian assemble (iter 1) finished in 0.054039 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:35] snes residual assemble (iter 2) finished in 0.027230 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:35] snes jacobian assemble (iter 2) finished in 0.059096 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:35] snes residual assemble (iter 3) finished in 0.032608 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:36] snes jacobian assemble (iter 3) finished in 0.054796 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:36] snes residual assemble (iter 4) finished in 0.028579 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:36] snes jacobian assemble (iter 4) finished in 0.054876 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:36] snes residual assemble (iter 5) finished in 0.028496 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:36] Completed time-step 32 [time=0.320000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:36] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:36] snes jacobian assemble finished in 0.222807 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:36] snes residual assemble finished in 0.143994 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:36] snes total assemble finished in 0.366802 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:36] snes total solve finished in 0.387362 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:36] snes all finished in 0.754165 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:36] Non-linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:36] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:36] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:36] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:36] KSP residual norm: 5.5313762751979194e-14\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:36] Total time step finished in 0.754967 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:36] Beginning time-step 33 [time=0.330000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:36] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 49.38269999241811\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:36] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:36] snes residual assemble (iter 1) finished in 0.030250 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:36] snes jacobian assemble (iter 1) finished in 0.062721 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:36] snes residual assemble (iter 2) finished in 0.029698 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:36] snes jacobian assemble (iter 2) finished in 0.055634 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:36] snes residual assemble (iter 3) finished in 0.028068 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:36] snes jacobian assemble (iter 3) finished in 0.059616 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:36] snes residual assemble (iter 4) finished in 0.028865 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:36] snes jacobian assemble (iter 4) finished in 0.059941 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:37] snes residual assemble (iter 5) finished in 0.028114 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:37] Completed time-step 33 [time=0.330000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:37] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:37] snes jacobian assemble finished in 0.237912 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:37] snes residual assemble finished in 0.144997 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:37] snes total assemble finished in 0.382909 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:37] snes total solve finished in 0.384299 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:37] snes all finished in 0.767208 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:37] Non-linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:37] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:37] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:37] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:37] KSP residual norm: 4.733958838046303e-14\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:37] Total time step finished in 0.768048 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:37] Beginning time-step 34 [time=0.340000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:37] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 45.26934027878724\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:37] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:37] snes residual assemble (iter 1) finished in 0.028645 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:37] snes jacobian assemble (iter 1) finished in 0.053926 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:37] snes residual assemble (iter 2) finished in 0.028058 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:37] snes jacobian assemble (iter 2) finished in 0.054380 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:37] snes residual assemble (iter 3) finished in 0.027858 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:37] snes jacobian assemble (iter 3) finished in 0.053827 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:37] snes residual assemble (iter 4) finished in 0.037390 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:37] snes jacobian assemble (iter 4) finished in 0.064276 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:37] snes residual assemble (iter 5) finished in 0.029619 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:37] Completed time-step 34 [time=0.340000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:37] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:37] snes jacobian assemble finished in 0.226411 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:37] snes residual assemble finished in 0.151572 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:37] snes total assemble finished in 0.377983 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:37] snes total solve finished in 0.376132 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:37] snes all finished in 0.754116 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:37] Non-linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:37] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:37] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:37] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:37] KSP residual norm: 3.938416220372038e-14\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:37] Total time step finished in 0.754833 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:37] Beginning time-step 35 [time=0.350000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:37] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 41.64930315331503\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:37] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:37] snes residual assemble (iter 1) finished in 0.028764 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:37] snes jacobian assemble (iter 1) finished in 0.055576 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:38] snes residual assemble (iter 2) finished in 0.029233 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:38] snes jacobian assemble (iter 2) finished in 0.055642 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:38] snes residual assemble (iter 3) finished in 0.029273 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:38] snes jacobian assemble (iter 3) finished in 0.058657 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:38] snes residual assemble (iter 4) finished in 0.031878 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:38] snes jacobian assemble (iter 4) finished in 0.060468 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:38] snes residual assemble (iter 5) finished in 0.027390 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:38] Completed time-step 35 [time=0.350000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:38] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:38] snes jacobian assemble finished in 0.230344 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:38] snes residual assemble finished in 0.146541 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:38] snes total assemble finished in 0.376885 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:38] snes total solve finished in 0.391853 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:38] snes all finished in 0.768738 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:38] Non-linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:38] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:38] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:38] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:38] KSP residual norm: 3.49508314604738e-14\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:38] Total time step finished in 0.769466 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:38] Beginning time-step 36 [time=0.360000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:38] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 38.44674367217067\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:38] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:38] snes residual assemble (iter 1) finished in 0.028523 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:38] snes jacobian assemble (iter 1) finished in 0.055160 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:38] snes residual assemble (iter 2) finished in 0.032708 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:38] snes jacobian assemble (iter 2) finished in 0.069379 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:39] snes residual assemble (iter 3) finished in 0.031647 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:39] snes jacobian assemble (iter 3) finished in 0.059769 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:39] snes residual assemble (iter 4) finished in 0.035631 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:39] snes jacobian assemble (iter 4) finished in 0.060689 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:39] snes residual assemble (iter 5) finished in 0.029949 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:39] Completed time-step 36 [time=0.360000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:39] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:39] snes jacobian assemble finished in 0.244999 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:39] snes residual assemble finished in 0.158460 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:39] snes total assemble finished in 0.403460 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:39] snes total solve finished in 0.439273 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:39] snes all finished in 0.842734 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:39] Non-linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:39] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:39] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:39] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:39] KSP residual norm: 2.7656479451266147e-14\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:39] Total time step finished in 0.843557 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:39] Beginning time-step 37 [time=0.370000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:39] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 35.59985158490235\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:39] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:39] snes residual assemble (iter 1) finished in 0.039651 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:39] snes jacobian assemble (iter 1) finished in 0.063667 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:39] snes residual assemble (iter 2) finished in 0.030802 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:39] snes jacobian assemble (iter 2) finished in 0.075645 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:39] snes residual assemble (iter 3) finished in 0.040364 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:40] snes jacobian assemble (iter 3) finished in 0.063449 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:40] snes residual assemble (iter 4) finished in 0.029816 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:40] Completed time-step 37 [time=0.370000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:40] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:40] snes jacobian assemble finished in 0.202762 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:40] snes residual assemble finished in 0.140635 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:40] snes total assemble finished in 0.343398 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:40] snes total solve finished in 0.332778 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:40] snes all finished in 0.676177 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:40] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:40] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:40] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:40] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:40] KSP residual norm: 2.973399176599465e-11\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:40] Total time step finished in 0.677024 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:40] Beginning time-step 38 [time=0.380000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:40] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 33.05784642283243\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:40] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:40] snes residual assemble (iter 1) finished in 0.030973 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:40] snes jacobian assemble (iter 1) finished in 0.058370 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:40] snes residual assemble (iter 2) finished in 0.031039 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:40] snes jacobian assemble (iter 2) finished in 0.059953 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:40] snes residual assemble (iter 3) finished in 0.030824 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:40] snes jacobian assemble (iter 3) finished in 0.057220 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:40] snes residual assemble (iter 4) finished in 0.041249 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:40] Completed time-step 38 [time=0.380000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:40] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:40] snes jacobian assemble finished in 0.175544 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:40] snes residual assemble finished in 0.134087 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:40] snes total assemble finished in 0.309631 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:40] snes total solve finished in 0.320382 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:40] snes all finished in 0.630014 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:40] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:40] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:40] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:40] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:40] KSP residual norm: 2.1578296155272415e-11\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:40] Total time step finished in 0.630829 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:40] Beginning time-step 39 [time=0.390000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:40] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 30.77869725113942\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:40] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:40] snes residual assemble (iter 1) finished in 0.031996 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:40] snes jacobian assemble (iter 1) finished in 0.062835 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:41] snes residual assemble (iter 2) finished in 0.033500 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:41] snes jacobian assemble (iter 2) finished in 0.064659 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:41] snes residual assemble (iter 3) finished in 0.032340 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:41] snes jacobian assemble (iter 3) finished in 0.064483 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:41] snes residual assemble (iter 4) finished in 0.030197 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:41] Completed time-step 39 [time=0.390000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:41] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:41] snes jacobian assemble finished in 0.191978 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:41] snes residual assemble finished in 0.128035 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:41] snes total assemble finished in 0.320013 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:41] snes total solve finished in 0.337406 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:41] snes all finished in 0.657420 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:41] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:41] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:41] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:41] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:41] KSP residual norm: 1.571467761732816e-11\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:41] Total time step finished in 0.658262 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:41] Beginning time-step 40 [time=0.400000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:41] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 28.72737402946086\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:41] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:41] snes residual assemble (iter 1) finished in 0.036005 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:41] snes jacobian assemble (iter 1) finished in 0.060323 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:41] snes residual assemble (iter 2) finished in 0.031587 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:41] snes jacobian assemble (iter 2) finished in 0.067371 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:41] snes residual assemble (iter 3) finished in 0.031180 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:42] snes jacobian assemble (iter 3) finished in 0.055248 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:42] snes residual assemble (iter 4) finished in 0.027538 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:42] Completed time-step 40 [time=0.400000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:42] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:42] snes jacobian assemble finished in 0.182943 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:42] snes residual assemble finished in 0.126312 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:42] snes total assemble finished in 0.309255 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:42] snes total solve finished in 0.338773 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:42] snes all finished in 0.648029 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:42] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:42] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:42] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:42] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:42] KSP residual norm: 1.1365485203060738e-11\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:42] Total time step finished in 0.648777 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:42] Beginning time-step 41 [time=0.410000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:42] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 26.874493515208542\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:42] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:42] snes residual assemble (iter 1) finished in 0.027766 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:42] snes jacobian assemble (iter 1) finished in 0.054606 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:42] snes residual assemble (iter 2) finished in 0.028862 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:42] snes jacobian assemble (iter 2) finished in 0.053905 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:42] snes residual assemble (iter 3) finished in 0.028265 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:42] snes jacobian assemble (iter 3) finished in 0.053565 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:42] snes residual assemble (iter 4) finished in 0.027243 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:42] Completed time-step 41 [time=0.410000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:42] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:42] snes jacobian assemble finished in 0.162078 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:42] snes residual assemble finished in 0.112138 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:42] snes total assemble finished in 0.274216 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:42] snes total solve finished in 0.267440 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:42] snes all finished in 0.541657 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:42] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:42] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:42] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:42] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:42] KSP residual norm: 8.343478488655734e-12\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:42] Total time step finished in 0.542385 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:42] Beginning time-step 42 [time=0.420000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:42] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 25.195261157978166\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:42] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:42] snes residual assemble (iter 1) finished in 0.028784 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:42] snes jacobian assemble (iter 1) finished in 0.054513 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:42] snes residual assemble (iter 2) finished in 0.029255 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:42] snes jacobian assemble (iter 2) finished in 0.055010 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:43] snes residual assemble (iter 3) finished in 0.029157 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:43] snes jacobian assemble (iter 3) finished in 0.055603 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:43] snes residual assemble (iter 4) finished in 0.029452 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:43] Completed time-step 42 [time=0.420000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:43] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:43] snes jacobian assemble finished in 0.165127 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:43] snes residual assemble finished in 0.116649 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:43] snes total assemble finished in 0.281777 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:43] snes total solve finished in 0.309408 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:43] snes all finished in 0.591185 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:43] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:43] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:43] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:43] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:43] KSP residual norm: 6.163045928737772e-12\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:43] Total time step finished in 0.591988 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:43] Beginning time-step 43 [time=0.430000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:43] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 23.66863728535691\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:43] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:43] snes residual assemble (iter 1) finished in 0.030447 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:43] snes jacobian assemble (iter 1) finished in 0.056212 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:43] snes residual assemble (iter 2) finished in 0.028361 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:43] snes jacobian assemble (iter 2) finished in 0.055591 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:43] snes residual assemble (iter 3) finished in 0.028916 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:43] snes jacobian assemble (iter 3) finished in 0.056682 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:43] snes residual assemble (iter 4) finished in 0.028305 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:43] Completed time-step 43 [time=0.430000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:43] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:43] snes jacobian assemble finished in 0.168486 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:43] snes residual assemble finished in 0.116029 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:43] snes total assemble finished in 0.284516 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:43] snes total solve finished in 0.290623 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:43] snes all finished in 0.575139 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:43] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:43] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:43] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:43] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:43] KSP residual norm: 4.5740517495615746e-12\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:43] Total time step finished in 0.576014 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:43] Beginning time-step 44 [time=0.440000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:43] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 22.276674845909383\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:43] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:43] snes residual assemble (iter 1) finished in 0.029275 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:43] snes jacobian assemble (iter 1) finished in 0.057453 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:44] snes residual assemble (iter 2) finished in 0.029842 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:44] snes jacobian assemble (iter 2) finished in 0.055689 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:44] snes residual assemble (iter 3) finished in 0.028540 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:44] snes jacobian assemble (iter 3) finished in 0.056532 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:44] snes residual assemble (iter 4) finished in 0.029154 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:44] Completed time-step 44 [time=0.440000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:44] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:44] snes jacobian assemble finished in 0.169675 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:44] snes residual assemble finished in 0.116813 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:44] snes total assemble finished in 0.286488 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:44] snes total solve finished in 0.292401 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:44] snes all finished in 0.578890 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:44] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:44] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:44] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:44] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:44] KSP residual norm: 3.855931889553224e-12\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:44] Total time step finished in 0.579659 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:44] Beginning time-step 45 [time=0.450000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:44] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 21.00398952273963\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:44] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:44] snes residual assemble (iter 1) finished in 0.029683 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:44] snes jacobian assemble (iter 1) finished in 0.055776 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:44] snes residual assemble (iter 2) finished in 0.030511 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:44] snes jacobian assemble (iter 2) finished in 0.057332 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:44] snes residual assemble (iter 3) finished in 0.029684 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:44] snes jacobian assemble (iter 3) finished in 0.057594 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:45] snes residual assemble (iter 4) finished in 0.039336 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:45] Completed time-step 45 [time=0.450000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:45] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:45] snes jacobian assemble finished in 0.170703 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:45] snes residual assemble finished in 0.129217 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:45] snes total assemble finished in 0.299921 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:45] snes total solve finished in 0.351023 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:45] snes all finished in 0.650944 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:45] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:45] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:45] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:45] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:45] KSP residual norm: 2.6505165999774726e-12\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:45] Total time step finished in 0.651696 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:45] Beginning time-step 46 [time=0.460000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:45] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 19.837332821475684\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:45] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:45] snes residual assemble (iter 1) finished in 0.032395 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:45] snes jacobian assemble (iter 1) finished in 0.081821 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:45] snes residual assemble (iter 2) finished in 0.031205 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:45] snes jacobian assemble (iter 2) finished in 0.072929 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:45] snes residual assemble (iter 3) finished in 0.039090 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:45] snes jacobian assemble (iter 3) finished in 0.060876 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:45] snes residual assemble (iter 4) finished in 0.031309 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:45] Completed time-step 46 [time=0.460000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:45] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:45] snes jacobian assemble finished in 0.215627 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:45] snes residual assemble finished in 0.134001 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:45] snes total assemble finished in 0.349629 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:45] snes total solve finished in 0.337694 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:45] snes all finished in 0.687323 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:45] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:45] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:45] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:45] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:45] KSP residual norm: 2.4615455588482274e-12\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:45] Total time step finished in 0.688189 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:45] Beginning time-step 47 [time=0.470000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:45] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 18.765245881945702\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:45] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:45] snes residual assemble (iter 1) finished in 0.031550 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:45] snes jacobian assemble (iter 1) finished in 0.057511 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:46] snes residual assemble (iter 2) finished in 0.032150 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:46] snes jacobian assemble (iter 2) finished in 0.057496 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:46] snes residual assemble (iter 3) finished in 0.032041 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:46] snes jacobian assemble (iter 3) finished in 0.058031 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:46] snes residual assemble (iter 4) finished in 0.029611 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:46] Completed time-step 47 [time=0.470000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:46] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:46] snes jacobian assemble finished in 0.173038 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:46] snes residual assemble finished in 0.125355 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:46] snes total assemble finished in 0.298393 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:46] snes total solve finished in 0.294418 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:46] snes all finished in 0.592812 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:46] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:46] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:46] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:46] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:46] KSP residual norm: 1.84710140694499e-12\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:46] Total time step finished in 0.593594 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:46] Beginning time-step 48 [time=0.480000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:46] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 17.777777028618402\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:46] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:46] snes residual assemble (iter 1) finished in 0.029701 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:46] snes jacobian assemble (iter 1) finished in 0.056875 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:46] snes residual assemble (iter 2) finished in 0.029286 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:46] snes jacobian assemble (iter 2) finished in 0.066320 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:46] snes residual assemble (iter 3) finished in 0.040740 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:46] snes jacobian assemble (iter 3) finished in 0.079419 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:47] snes residual assemble (iter 4) finished in 0.042884 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:47] Completed time-step 48 [time=0.480000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:47] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:47] snes jacobian assemble finished in 0.202615 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:47] snes residual assemble finished in 0.142612 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:47] snes total assemble finished in 0.345227 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:47] snes total solve finished in 0.342477 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:47] snes all finished in 0.687705 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:47] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:47] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:47] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:47] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:47] KSP residual norm: 1.400562233731467e-12\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:47] Total time step finished in 0.688630 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:47] Beginning time-step 49 [time=0.490000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:47] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 16.866249992767735\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:47] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:47] snes residual assemble (iter 1) finished in 0.042555 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:47] snes jacobian assemble (iter 1) finished in 0.072848 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:47] snes residual assemble (iter 2) finished in 0.043999 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:47] snes jacobian assemble (iter 2) finished in 0.076539 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:47] snes residual assemble (iter 3) finished in 0.030532 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:47] snes jacobian assemble (iter 3) finished in 0.059028 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:47] snes residual assemble (iter 4) finished in 0.030449 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:47] Completed time-step 49 [time=0.490000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:47] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:47] snes jacobian assemble finished in 0.208416 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:47] snes residual assemble finished in 0.147537 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:47] snes total assemble finished in 0.355953 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:47] snes total solve finished in 0.311216 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:47] snes all finished in 0.667170 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:47] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:47] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:47] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:47] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:47] KSP residual norm: 1.0768305039828107e-12\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:47] Total time step finished in 0.668064 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:47] Beginning time-step 50 [time=0.500000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:47] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 16.02307267694414\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:47] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:47] snes residual assemble (iter 1) finished in 0.030478 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:47] snes jacobian assemble (iter 1) finished in 0.058258 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:48] snes residual assemble (iter 2) finished in 0.030684 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:48] snes jacobian assemble (iter 2) finished in 0.057378 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:48] snes residual assemble (iter 3) finished in 0.030947 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:48] snes jacobian assemble (iter 3) finished in 0.057998 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:48] snes residual assemble (iter 4) finished in 0.029623 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:48] Completed time-step 50 [time=0.500000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:48] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:48] snes jacobian assemble finished in 0.173634 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:48] snes residual assemble finished in 0.121733 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:48] snes total assemble finished in 0.295367 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:48] snes total solve finished in 0.272219 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:48] snes all finished in 0.567587 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:48] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:48] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:48] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:48] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:48] KSP residual norm: 8.242945322524217e-13\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:48] Total time step finished in 0.568404 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:48] Beginning time-step 51 [time=0.510000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:48] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 15.241578555492197\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:48] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:48] snes residual assemble (iter 1) finished in 0.030614 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:48] snes jacobian assemble (iter 1) finished in 0.057947 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:48] snes residual assemble (iter 2) finished in 0.029624 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:48] snes jacobian assemble (iter 2) finished in 0.056928 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:48] snes residual assemble (iter 3) finished in 0.030516 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:48] snes jacobian assemble (iter 3) finished in 0.057184 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:48] snes residual assemble (iter 4) finished in 0.029164 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:48] Completed time-step 51 [time=0.510000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:48] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:48] snes jacobian assemble finished in 0.172061 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:48] snes residual assemble finished in 0.119920 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:48] snes total assemble finished in 0.291981 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:48] snes total solve finished in 0.271101 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:48] snes all finished in 0.563083 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:48] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:48] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:48] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:48] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:48] KSP residual norm: 6.342670871558716e-13\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:48] Total time step finished in 0.563863 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:48] Beginning time-step 52 [time=0.520000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:48] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 14.51589449709445\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:48] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:48] snes residual assemble (iter 1) finished in 0.029231 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:49] snes jacobian assemble (iter 1) finished in 0.057459 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:49] snes residual assemble (iter 2) finished in 0.030205 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:49] snes jacobian assemble (iter 2) finished in 0.057338 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:49] snes residual assemble (iter 3) finished in 0.029728 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:49] snes jacobian assemble (iter 3) finished in 0.056803 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:49] snes residual assemble (iter 4) finished in 0.029844 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:49] Completed time-step 52 [time=0.520000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:49] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:49] snes jacobian assemble finished in 0.171602 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:49] snes residual assemble finished in 0.119009 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:49] snes total assemble finished in 0.290611 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:49] snes total solve finished in 0.277171 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:49] snes all finished in 0.567782 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:49] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:49] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:49] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:49] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:49] KSP residual norm: 4.611519149062016e-13\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:49] Total time step finished in 0.568568 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:49] Beginning time-step 53 [time=0.530000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:49] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 13.840830096307855\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:49] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:49] snes residual assemble (iter 1) finished in 0.030215 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:49] snes jacobian assemble (iter 1) finished in 0.057604 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:49] snes residual assemble (iter 2) finished in 0.028882 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:49] snes jacobian assemble (iter 2) finished in 0.055948 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:49] snes residual assemble (iter 3) finished in 0.030025 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:49] snes jacobian assemble (iter 3) finished in 0.056476 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:50] snes residual assemble (iter 4) finished in 0.028135 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:50] Completed time-step 53 [time=0.530000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:50] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:50] snes jacobian assemble finished in 0.170029 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:50] snes residual assemble finished in 0.117259 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:50] snes total assemble finished in 0.287288 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:50] snes total solve finished in 0.273514 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:50] snes all finished in 0.560803 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:50] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:50] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:50] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:50] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:50] KSP residual norm: 3.6569153676733003e-13\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:50] Total time step finished in 0.561619 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:50] Beginning time-step 54 [time=0.540000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:50] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 13.211784604641252\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:50] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:50] snes residual assemble (iter 1) finished in 0.028753 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:50] snes jacobian assemble (iter 1) finished in 0.054883 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:50] snes residual assemble (iter 2) finished in 0.028894 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:50] snes jacobian assemble (iter 2) finished in 0.054799 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:50] snes residual assemble (iter 3) finished in 0.028319 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:50] snes jacobian assemble (iter 3) finished in 0.055201 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:50] snes residual assemble (iter 4) finished in 0.028270 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:50] Completed time-step 54 [time=0.540000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:50] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:50] snes jacobian assemble finished in 0.164884 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:50] snes residual assemble finished in 0.114238 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:50] snes total assemble finished in 0.279122 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:50] snes total solve finished in 0.266942 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:50] snes all finished in 0.546064 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:50] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:50] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:50] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:50] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:50] KSP residual norm: 2.863208897368951e-13\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:50] Total time step finished in 0.546827 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:50] Beginning time-step 55 [time=0.550000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:50] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 12.624668334171929\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:50] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:50] snes residual assemble (iter 1) finished in 0.027845 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:50] snes jacobian assemble (iter 1) finished in 0.051813 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:50] snes residual assemble (iter 2) finished in 0.027338 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:50] snes jacobian assemble (iter 2) finished in 0.054120 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:51] snes residual assemble (iter 3) finished in 0.029704 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:51] snes jacobian assemble (iter 3) finished in 0.053475 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:51] snes residual assemble (iter 4) finished in 0.027893 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:51] Completed time-step 55 [time=0.550000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:51] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:51] snes jacobian assemble finished in 0.159409 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:51] snes residual assemble finished in 0.112782 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:51] snes total assemble finished in 0.272191 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:51] snes total solve finished in 0.262021 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:51] snes all finished in 0.534212 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:51] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:51] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:51] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:51] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:51] KSP residual norm: 2.2534610446816796e-13\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:51] Total time step finished in 0.535003 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:51] Beginning time-step 56 [time=0.560000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:51] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 12.075836016867925\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:51] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:51] snes residual assemble (iter 1) finished in 0.028023 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:51] snes jacobian assemble (iter 1) finished in 0.054226 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:51] snes residual assemble (iter 2) finished in 0.028079 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:51] snes jacobian assemble (iter 2) finished in 0.053555 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:51] snes residual assemble (iter 3) finished in 0.028488 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:51] snes jacobian assemble (iter 3) finished in 0.051985 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:51] snes residual assemble (iter 4) finished in 0.028037 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:51] Completed time-step 56 [time=0.560000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:51] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:51] snes jacobian assemble finished in 0.159767 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:51] snes residual assemble finished in 0.112628 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:51] snes total assemble finished in 0.272395 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:51] snes total solve finished in 0.262960 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:51] snes all finished in 0.535356 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:51] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:51] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:51] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:51] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:51] KSP residual norm: 1.783877803284542e-13\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:51] Total time step finished in 0.536214 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:51] Beginning time-step 57 [time=0.570000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:51] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 11.5620300864407\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:51] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:51] snes residual assemble (iter 1) finished in 0.028548 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:51] snes jacobian assemble (iter 1) finished in 0.054859 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:51] snes residual assemble (iter 2) finished in 0.028303 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:52] snes jacobian assemble (iter 2) finished in 0.054740 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:52] snes residual assemble (iter 3) finished in 0.026980 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:52] snes jacobian assemble (iter 3) finished in 0.050826 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:52] snes residual assemble (iter 4) finished in 0.027717 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:52] Completed time-step 57 [time=0.570000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:52] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:52] snes jacobian assemble finished in 0.160426 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:52] snes residual assemble finished in 0.111550 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:52] snes total assemble finished in 0.271976 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:52] snes total solve finished in 0.270534 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:52] snes all finished in 0.542510 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:52] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:52] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:52] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:52] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:52] KSP residual norm: 1.4202348924529054e-13\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:52] Total time step finished in 0.543300 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:52] Beginning time-step 58 [time=0.580000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:52] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 11.080332228584666\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:52] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:52] snes residual assemble (iter 1) finished in 0.029314 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:52] snes jacobian assemble (iter 1) finished in 0.053965 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:52] snes residual assemble (iter 2) finished in 0.029139 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:52] snes jacobian assemble (iter 2) finished in 0.055270 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:52] snes residual assemble (iter 3) finished in 0.029296 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:52] snes jacobian assemble (iter 3) finished in 0.055383 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:52] snes residual assemble (iter 4) finished in 0.028912 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:52] Completed time-step 58 [time=0.580000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:52] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:52] snes jacobian assemble finished in 0.164620 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:52] snes residual assemble finished in 0.116663 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:52] snes total assemble finished in 0.281283 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:52] snes total solve finished in 0.267908 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:52] snes all finished in 0.549191 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:52] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:52] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:52] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:52] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:52] KSP residual norm: 1.0487739063724842e-13\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:52] Total time step finished in 0.549882 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:52] Beginning time-step 59 [time=0.590000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:52] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 10.628121850766092\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:52] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:52] snes residual assemble (iter 1) finished in 0.029045 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:52] snes jacobian assemble (iter 1) finished in 0.056599 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:53] snes residual assemble (iter 2) finished in 0.029960 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:53] snes jacobian assemble (iter 2) finished in 0.056356 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:53] snes residual assemble (iter 3) finished in 0.029151 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:53] snes jacobian assemble (iter 3) finished in 0.054592 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:53] snes residual assemble (iter 4) finished in 0.026459 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:53] Completed time-step 59 [time=0.590000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:53] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:53] snes jacobian assemble finished in 0.167548 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:53] snes residual assemble finished in 0.114618 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:53] snes total assemble finished in 0.282166 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:53] snes total solve finished in 0.261141 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:53] snes all finished in 0.543308 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:53] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:53] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:53] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:53] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:53] KSP residual norm: 8.522279550814113e-14\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:53] Total time step finished in 0.543988 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:53] Beginning time-step 60 [time=0.600000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:53] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 10.203040364456228\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:53] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:53] snes residual assemble (iter 1) finished in 0.026991 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:53] snes jacobian assemble (iter 1) finished in 0.052910 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:53] snes residual assemble (iter 2) finished in 0.027617 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:53] snes jacobian assemble (iter 2) finished in 0.053134 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:53] snes residual assemble (iter 3) finished in 0.031790 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:53] snes jacobian assemble (iter 3) finished in 0.065246 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:54] snes residual assemble (iter 4) finished in 0.031301 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:54] Completed time-step 60 [time=0.600000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:54] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:54] snes jacobian assemble finished in 0.171290 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:54] snes residual assemble finished in 0.117701 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:54] snes total assemble finished in 0.288991 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:54] snes total solve finished in 0.294001 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:54] snes all finished in 0.582993 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:54] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:54] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:54] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:54] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:54] KSP residual norm: 6.994438786758587e-14\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:54] Total time step finished in 0.583863 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:54] Beginning time-step 61 [time=0.610000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:54] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 9.802960368460845\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:54] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:54] snes residual assemble (iter 1) finished in 0.032443 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:54] snes jacobian assemble (iter 1) finished in 0.063959 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:54] snes residual assemble (iter 2) finished in 0.030322 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:54] snes jacobian assemble (iter 2) finished in 0.057905 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:54] snes residual assemble (iter 3) finished in 0.030571 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:54] snes jacobian assemble (iter 3) finished in 0.058617 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:54] snes residual assemble (iter 4) finished in 0.032085 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:54] Completed time-step 61 [time=0.610000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:54] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:54] snes jacobian assemble finished in 0.180483 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:54] snes residual assemble finished in 0.125422 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:54] snes total assemble finished in 0.305905 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:54] snes total solve finished in 0.286000 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:54] snes all finished in 0.591906 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:54] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:54] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:54] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:54] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:54] KSP residual norm: 5.799220342848679e-14\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:54] Total time step finished in 0.592786 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:54] Beginning time-step 62 [time=0.620000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:54] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 9.425958979682036\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:54] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:54] snes residual assemble (iter 1) finished in 0.030904 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:54] snes jacobian assemble (iter 1) finished in 0.059996 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:54] snes residual assemble (iter 2) finished in 0.031019 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:54] snes jacobian assemble (iter 2) finished in 0.059101 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:55] snes residual assemble (iter 3) finished in 0.032503 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:55] snes jacobian assemble (iter 3) finished in 0.059588 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:55] snes residual assemble (iter 4) finished in 0.030716 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:55] Completed time-step 62 [time=0.620000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:55] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:55] snes jacobian assemble finished in 0.178687 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:55] snes residual assemble finished in 0.125144 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:55] snes total assemble finished in 0.303831 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:55] snes total solve finished in 0.307830 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:55] snes all finished in 0.611662 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:55] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:55] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:55] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:55] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:55] KSP residual norm: 4.820219117720827e-14\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:55] Total time step finished in 0.612527 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:55] Beginning time-step 63 [time=0.630000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:55] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 9.070294685068347\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:55] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:55] snes residual assemble (iter 1) finished in 0.029391 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:55] snes jacobian assemble (iter 1) finished in 0.058267 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:55] snes residual assemble (iter 2) finished in 0.027987 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:55] snes jacobian assemble (iter 2) finished in 0.053725 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:55] snes residual assemble (iter 3) finished in 0.027405 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:55] snes jacobian assemble (iter 3) finished in 0.052815 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:55] snes residual assemble (iter 4) finished in 0.028360 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:55] Completed time-step 63 [time=0.630000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:55] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:55] snes jacobian assemble finished in 0.164808 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:55] snes residual assemble finished in 0.113144 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:55] snes total assemble finished in 0.277953 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:55] snes total solve finished in 0.256479 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:55] snes all finished in 0.534432 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:55] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:55] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:55] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:55] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:55] KSP residual norm: 4.2089978279897793e-14\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:55] Total time step finished in 0.535260 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:55] Beginning time-step 64 [time=0.640000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:55] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 8.734387193885595\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:55] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:55] snes residual assemble (iter 1) finished in 0.028076 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:55] snes jacobian assemble (iter 1) finished in 0.054517 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:55] snes residual assemble (iter 2) finished in 0.027987 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:56] snes jacobian assemble (iter 2) finished in 0.054284 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:56] snes residual assemble (iter 3) finished in 0.028804 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:56] snes jacobian assemble (iter 3) finished in 0.053929 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:56] snes residual assemble (iter 4) finished in 0.027666 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:56] Completed time-step 64 [time=0.640000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:56] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:56] snes jacobian assemble finished in 0.162732 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:56] snes residual assemble finished in 0.112534 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:56] snes total assemble finished in 0.275266 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:56] snes total solve finished in 0.247359 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:56] snes all finished in 0.522625 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:56] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:56] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:56] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:56] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:56] KSP residual norm: 3.47607199853257e-14\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:56] Total time step finished in 0.523271 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:56] Beginning time-step 65 [time=0.650000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:56] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 8.416799853171142\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:56] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:56] snes residual assemble (iter 1) finished in 0.028087 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:56] snes jacobian assemble (iter 1) finished in 0.052720 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:56] snes residual assemble (iter 2) finished in 0.028273 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:56] snes jacobian assemble (iter 2) finished in 0.053200 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:56] snes residual assemble (iter 3) finished in 0.028754 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:56] snes jacobian assemble (iter 3) finished in 0.055094 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:56] snes residual assemble (iter 4) finished in 0.029500 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:56] Completed time-step 65 [time=0.650000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:56] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:56] snes jacobian assemble finished in 0.161015 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:56] snes residual assemble finished in 0.114617 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:56] snes total assemble finished in 0.275632 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:56] snes total solve finished in 0.253053 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:56] snes all finished in 0.528686 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:56] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:56] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:56] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:56] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:56] KSP residual norm: 2.8547229403231113e-14\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:56] Total time step finished in 0.529386 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:56] Beginning time-step 66 [time=0.660000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:56] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 8.116224261152638\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:56] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:56] snes residual assemble (iter 1) finished in 0.028388 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:56] snes jacobian assemble (iter 1) finished in 0.053350 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:57] snes residual assemble (iter 2) finished in 0.027584 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:57] snes jacobian assemble (iter 2) finished in 0.055218 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:57] snes residual assemble (iter 3) finished in 0.028460 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:57] snes jacobian assemble (iter 3) finished in 0.054280 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:57] snes residual assemble (iter 4) finished in 0.027793 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:57] Completed time-step 66 [time=0.660000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:57] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:57] snes jacobian assemble finished in 0.162849 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:57] snes residual assemble finished in 0.112227 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:57] snes total assemble finished in 0.275076 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:57] snes total solve finished in 0.264371 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:57] snes all finished in 0.539447 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:57] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:57] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:57] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:57] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:57] KSP residual norm: 2.3215585627947273e-14\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:57] Total time step finished in 0.540114 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:57] Beginning time-step 67 [time=0.670000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:57] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 7.831466769698636\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:57] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:57] snes residual assemble (iter 1) finished in 0.029163 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:57] snes jacobian assemble (iter 1) finished in 0.056720 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:57] snes residual assemble (iter 2) finished in 0.028517 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:57] snes jacobian assemble (iter 2) finished in 0.053103 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:57] snes residual assemble (iter 3) finished in 0.028153 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:57] snes jacobian assemble (iter 3) finished in 0.053478 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:57] snes residual assemble (iter 4) finished in 0.028013 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:57] Completed time-step 67 [time=0.670000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:57] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:57] snes jacobian assemble finished in 0.163302 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:57] snes residual assemble finished in 0.113848 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:57] snes total assemble finished in 0.277150 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:57] snes total solve finished in 0.245917 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:57] snes all finished in 0.523068 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:57] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:57] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:57] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:57] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:57] KSP residual norm: 1.871549142831132e-14\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:57] Total time step finished in 0.523923 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:57] Beginning time-step 68 [time=0.680000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:57] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 7.561436615321782\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:57] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:57] snes residual assemble (iter 1) finished in 0.027714 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:58] snes jacobian assemble (iter 1) finished in 0.052932 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:58] snes residual assemble (iter 2) finished in 0.027792 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:58] snes jacobian assemble (iter 2) finished in 0.051999 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:58] snes residual assemble (iter 3) finished in 0.027685 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:58] snes jacobian assemble (iter 3) finished in 0.052238 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:58] snes residual assemble (iter 4) finished in 0.028018 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:58] Completed time-step 68 [time=0.680000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:58] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:58] snes jacobian assemble finished in 0.157170 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:58] snes residual assemble finished in 0.111211 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:58] snes total assemble finished in 0.268381 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:58] snes total solve finished in 0.238491 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:58] snes all finished in 0.506872 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:58] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:58] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:58] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:58] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:58] KSP residual norm: 1.507076103405202e-14\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:58] Total time step finished in 0.507837 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:58] Beginning time-step 69 [time=0.690000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:58] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 7.30513545828444\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:58] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:58] snes residual assemble (iter 1) finished in 0.027313 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:58] snes jacobian assemble (iter 1) finished in 0.052686 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:58] snes residual assemble (iter 2) finished in 0.028037 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:58] snes jacobian assemble (iter 2) finished in 0.052531 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:58] snes residual assemble (iter 3) finished in 0.028288 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:58] snes jacobian assemble (iter 3) finished in 0.053300 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:58] snes residual assemble (iter 4) finished in 0.027586 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:58] Completed time-step 69 [time=0.690000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:58] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:58] snes jacobian assemble finished in 0.158518 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:58] snes residual assemble finished in 0.111226 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:58] snes total assemble finished in 0.269744 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:58] snes total solve finished in 0.237735 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:58] snes all finished in 0.507479 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:58] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:58] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:58] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:58] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:58] KSP residual norm: 1.2252288674641364e-14\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:58] Total time step finished in 0.508095 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:58] Beginning time-step 70 [time=0.700000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:58] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 7.061648141734622\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:58] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:59] snes residual assemble (iter 1) finished in 0.027477 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:59] snes jacobian assemble (iter 1) finished in 0.053424 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:59] snes residual assemble (iter 2) finished in 0.028116 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:59] snes jacobian assemble (iter 2) finished in 0.052918 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:59] snes residual assemble (iter 3) finished in 0.028013 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:59] snes jacobian assemble (iter 3) finished in 0.053285 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:59] snes residual assemble (iter 4) finished in 0.027420 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:59] Completed time-step 70 [time=0.700000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:59] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:59] snes jacobian assemble finished in 0.159628 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:59] snes residual assemble finished in 0.111029 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:59] snes total assemble finished in 0.270658 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:59] snes total solve finished in 0.238504 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:59] snes all finished in 0.509162 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:59] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:59] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:59] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:59] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:59] KSP residual norm: 1.0134519846263248e-14\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:59] Total time step finished in 0.509776 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:39:59] Beginning time-step 71 [time=0.710000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:59] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 6.830134511176311\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:39:59] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:59] snes residual assemble (iter 1) finished in 0.027441 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:59] snes jacobian assemble (iter 1) finished in 0.052255 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:59] snes residual assemble (iter 2) finished in 0.027317 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:59] snes jacobian assemble (iter 2) finished in 0.052031 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:59] snes residual assemble (iter 3) finished in 0.028211 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:39:59] snes jacobian assemble (iter 3) finished in 0.052768 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:00] snes residual assemble (iter 4) finished in 0.027359 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:00] Completed time-step 71 [time=0.710000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:00] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:00] snes jacobian assemble finished in 0.157055 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:00] snes residual assemble finished in 0.110329 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:00] snes total assemble finished in 0.267385 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:00] snes total solve finished in 0.236171 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:00] snes all finished in 0.503556 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:00] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:00] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:00] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:00] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:00] KSP residual norm: 8.5452009910957e-15\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:00] Total time step finished in 0.504166 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:00] Beginning time-step 72 [time=0.720000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:00] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 6.609822157270173\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:00] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:00] snes residual assemble (iter 1) finished in 0.027264 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:00] snes jacobian assemble (iter 1) finished in 0.052305 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:00] snes residual assemble (iter 2) finished in 0.027386 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:00] snes jacobian assemble (iter 2) finished in 0.052967 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:00] snes residual assemble (iter 3) finished in 0.028361 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:00] snes jacobian assemble (iter 3) finished in 0.053248 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:00] snes residual assemble (iter 4) finished in 0.028456 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:00] Completed time-step 72 [time=0.720000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:00] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:00] snes jacobian assemble finished in 0.158521 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:00] snes residual assemble finished in 0.111468 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:00] snes total assemble finished in 0.269989 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:00] snes total solve finished in 0.240793 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:00] snes all finished in 0.510783 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:00] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:00] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:00] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:00] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:00] KSP residual norm: 7.326783574675e-15\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:00] Total time step finished in 0.511596 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:00] Beginning time-step 73 [time=0.730000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:00] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 6.399999965049119\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:00] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:00] snes residual assemble (iter 1) finished in 0.028216 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:00] snes jacobian assemble (iter 1) finished in 0.052714 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:00] snes residual assemble (iter 2) finished in 0.027985 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:00] snes jacobian assemble (iter 2) finished in 0.053761 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:00] snes residual assemble (iter 3) finished in 0.027430 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:00] snes jacobian assemble (iter 3) finished in 0.052215 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:01] snes residual assemble (iter 4) finished in 0.028518 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:01] Completed time-step 73 [time=0.730000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:01] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:01] snes jacobian assemble finished in 0.158691 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:01] snes residual assemble finished in 0.112150 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:01] snes total assemble finished in 0.270842 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:01] snes total solve finished in 0.240218 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:01] snes all finished in 0.511061 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:01] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:01] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:01] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:01] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:01] KSP residual norm: 6.362519177149828e-15\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:01] Total time step finished in 0.511787 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:01] Beginning time-step 74 [time=0.740000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:01] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 6.200012368253738\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:01] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:01] snes residual assemble (iter 1) finished in 0.028046 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:01] snes jacobian assemble (iter 1) finished in 0.053073 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:01] snes residual assemble (iter 2) finished in 0.027330 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:01] snes jacobian assemble (iter 2) finished in 0.053155 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:01] snes residual assemble (iter 3) finished in 0.028175 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:01] snes jacobian assemble (iter 3) finished in 0.053716 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:01] snes residual assemble (iter 4) finished in 0.029139 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:01] Completed time-step 74 [time=0.740000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:01] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:01] snes jacobian assemble finished in 0.159945 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:01] snes residual assemble finished in 0.112692 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:01] snes total assemble finished in 0.272637 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:01] snes total solve finished in 0.246639 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:01] snes all finished in 0.519277 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:01] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:01] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:01] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:01] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:01] KSP residual norm: 5.573993963683511e-15\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:01] Total time step finished in 0.519984 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:01] Beginning time-step 75 [time=0.750000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:01] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 6.009254222601612\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:01] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:01] snes residual assemble (iter 1) finished in 0.028543 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:01] snes jacobian assemble (iter 1) finished in 0.052281 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:01] snes residual assemble (iter 2) finished in 0.028626 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:01] snes jacobian assemble (iter 2) finished in 0.052981 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:01] snes residual assemble (iter 3) finished in 0.028617 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:01] snes jacobian assemble (iter 3) finished in 0.053066 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:02] snes residual assemble (iter 4) finished in 0.027259 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:02] Completed time-step 75 [time=0.750000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:02] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:02] snes jacobian assemble finished in 0.158328 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:02] snes residual assemble finished in 0.113046 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:02] snes total assemble finished in 0.271375 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:02] snes total solve finished in 0.253438 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:02] snes all finished in 0.524813 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:02] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:02] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:02] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:02] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:02] KSP residual norm: 4.9102671775774615e-15\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:02] Total time step finished in 0.525531 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:02] Beginning time-step 76 [time=0.760000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:02] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 5.827166222672986\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:02] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:02] snes residual assemble (iter 1) finished in 0.028372 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:02] snes jacobian assemble (iter 1) finished in 0.055624 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:02] snes residual assemble (iter 2) finished in 0.028097 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:02] snes jacobian assemble (iter 2) finished in 0.054506 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:02] snes residual assemble (iter 3) finished in 0.028377 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:02] snes jacobian assemble (iter 3) finished in 0.054372 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:02] snes residual assemble (iter 4) finished in 0.030071 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:02] Completed time-step 76 [time=0.760000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:02] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:02] snes jacobian assemble finished in 0.164503 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:02] snes residual assemble finished in 0.114918 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:02] snes total assemble finished in 0.279422 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:02] snes total solve finished in 0.267288 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:02] snes all finished in 0.546710 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:02] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:02] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:02] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:02] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:02] KSP residual norm: 4.345478794821946e-15\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:02] Total time step finished in 0.547427 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:02] Beginning time-step 77 [time=0.770000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:02] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 5.653230797327069\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:02] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:02] snes residual assemble (iter 1) finished in 0.028257 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:02] snes jacobian assemble (iter 1) finished in 0.054316 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:02] snes residual assemble (iter 2) finished in 0.026935 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:02] snes jacobian assemble (iter 2) finished in 0.051300 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:03] snes residual assemble (iter 3) finished in 0.027801 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:03] snes jacobian assemble (iter 3) finished in 0.054778 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:03] snes residual assemble (iter 4) finished in 0.028170 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:03] Completed time-step 77 [time=0.770000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:03] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:03] snes jacobian assemble finished in 0.160395 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:03] snes residual assemble finished in 0.111164 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:03] snes total assemble finished in 0.271559 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:03] snes total solve finished in 0.243753 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:03] snes all finished in 0.515313 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:03] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:03] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:03] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:03] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:03] KSP residual norm: 4.007125395764902e-15\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:03] Total time step finished in 0.516038 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:03] Beginning time-step 78 [time=0.780000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:03] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 5.486968427908323\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:03] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:03] snes residual assemble (iter 1) finished in 0.028445 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:03] snes jacobian assemble (iter 1) finished in 0.054814 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:03] snes residual assemble (iter 2) finished in 0.028955 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:03] snes jacobian assemble (iter 2) finished in 0.055147 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:03] snes residual assemble (iter 3) finished in 0.028395 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:03] snes jacobian assemble (iter 3) finished in 0.055011 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:03] snes residual assemble (iter 4) finished in 0.029290 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:03] Completed time-step 78 [time=0.780000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:03] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:03] snes jacobian assemble finished in 0.164973 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:03] snes residual assemble finished in 0.115088 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:03] snes total assemble finished in 0.280061 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:03] snes total solve finished in 0.274549 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:03] snes all finished in 0.554610 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:03] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:03] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:03] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:03] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:03] KSP residual norm: 1.5097784256858622e-15\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:03] Total time step finished in 0.555308 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:03] Beginning time-step 79 [time=0.790000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:03] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 5.327934339686635\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:03] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:03] snes residual assemble (iter 1) finished in 0.029116 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:03] snes jacobian assemble (iter 1) finished in 0.055966 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:03] snes residual assemble (iter 2) finished in 0.028453 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:04] snes jacobian assemble (iter 2) finished in 0.055064 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:04] snes residual assemble (iter 3) finished in 0.029150 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:04] snes jacobian assemble (iter 3) finished in 0.052160 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:04] snes residual assemble (iter 4) finished in 0.026782 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:04] Completed time-step 79 [time=0.790000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:04] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:04] snes jacobian assemble finished in 0.163191 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:04] snes residual assemble finished in 0.113502 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:04] snes total assemble finished in 0.276694 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:04] snes total solve finished in 0.266291 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:04] snes all finished in 0.542985 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:04] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:04] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:04] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:04] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:04] KSP residual norm: 4.598252414008857e-15\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:04] Total time step finished in 0.543758 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:04] Beginning time-step 80 [time=0.800000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:04] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 5.175715524183033\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:04] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:04] snes residual assemble (iter 1) finished in 0.027603 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:04] snes jacobian assemble (iter 1) finished in 0.053424 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:04] snes residual assemble (iter 2) finished in 0.027368 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:04] snes jacobian assemble (iter 2) finished in 0.054002 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:04] snes residual assemble (iter 3) finished in 0.026767 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:04] snes jacobian assemble (iter 3) finished in 0.053943 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:04] snes residual assemble (iter 4) finished in 0.032737 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:04] Completed time-step 80 [time=0.800000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:04] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:04] snes jacobian assemble finished in 0.161370 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:04] snes residual assemble finished in 0.114476 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:04] snes total assemble finished in 0.275847 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:04] snes total solve finished in 0.266642 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:04] snes all finished in 0.542490 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:04] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:04] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:04] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:04] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:04] KSP residual norm: 3.579246912262549e-15\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:04] Total time step finished in 0.543409 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:04] Beginning time-step 81 [time=0.810000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:04] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 5.029928055068922\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:04] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:04] snes residual assemble (iter 1) finished in 0.053780 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:05] snes jacobian assemble (iter 1) finished in 0.112509 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:05] snes residual assemble (iter 2) finished in 0.029588 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:05] snes jacobian assemble (iter 2) finished in 0.056127 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:05] snes residual assemble (iter 3) finished in 0.027869 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:05] snes jacobian assemble (iter 3) finished in 0.055302 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:05] snes residual assemble (iter 4) finished in 0.029723 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:05] Completed time-step 81 [time=0.810000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:05] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:05] snes jacobian assemble finished in 0.223940 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:05] snes residual assemble finished in 0.140961 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:05] snes total assemble finished in 0.364902 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:05] snes total solve finished in 0.284665 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:05] snes all finished in 0.649567 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:05] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:05] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:05] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:05] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:05] KSP residual norm: 3.123817362345718e-15\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:05] Total time step finished in 0.650550 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:05] Beginning time-step 82 [time=0.820000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:05] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 4.890214664828818\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:05] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:05] snes residual assemble (iter 1) finished in 0.030962 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:05] snes jacobian assemble (iter 1) finished in 0.056680 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:05] snes residual assemble (iter 2) finished in 0.027516 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:05] snes jacobian assemble (iter 2) finished in 0.055248 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:05] snes residual assemble (iter 3) finished in 0.027237 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:05] snes jacobian assemble (iter 3) finished in 0.054433 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:06] snes residual assemble (iter 4) finished in 0.027834 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:06] Completed time-step 82 [time=0.820000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:06] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:06] snes jacobian assemble finished in 0.166361 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:06] snes residual assemble finished in 0.113550 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:06] snes total assemble finished in 0.279911 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:06] snes total solve finished in 0.269500 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:06] snes all finished in 0.549412 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:06] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:06] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:06] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:06] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:06] KSP residual norm: 2.806374118258694e-15\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:06] Total time step finished in 0.550288 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:06] Beginning time-step 83 [time=0.830000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:06] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 4.756242554014989\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:06] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:06] snes residual assemble (iter 1) finished in 0.028788 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:06] snes jacobian assemble (iter 1) finished in 0.055033 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:06] snes residual assemble (iter 2) finished in 0.027012 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:06] snes jacobian assemble (iter 2) finished in 0.054559 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:06] snes residual assemble (iter 3) finished in 0.026919 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:06] snes jacobian assemble (iter 3) finished in 0.053557 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:06] snes residual assemble (iter 4) finished in 0.030629 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:06] Completed time-step 83 [time=0.830000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:06] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:06] snes jacobian assemble finished in 0.163150 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:06] snes residual assemble finished in 0.113348 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:06] snes total assemble finished in 0.276499 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:06] snes total solve finished in 0.253080 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:06] snes all finished in 0.529580 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:06] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:06] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:06] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:06] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:06] KSP residual norm: 2.5405082337790436e-15\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:06] Total time step finished in 0.530438 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:06] Beginning time-step 84 [time=0.840000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:06] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 4.627701407491713\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:06] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:06] snes residual assemble (iter 1) finished in 0.033061 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:06] snes jacobian assemble (iter 1) finished in 0.059115 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:06] snes residual assemble (iter 2) finished in 0.028708 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:06] snes jacobian assemble (iter 2) finished in 0.055591 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:07] snes residual assemble (iter 3) finished in 0.027981 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:07] snes jacobian assemble (iter 3) finished in 0.052761 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:07] snes residual assemble (iter 4) finished in 0.028906 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:07] Completed time-step 84 [time=0.840000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:07] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:07] snes jacobian assemble finished in 0.167468 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:07] snes residual assemble finished in 0.118657 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:07] snes total assemble finished in 0.286126 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:07] snes total solve finished in 0.255894 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:07] snes all finished in 0.542020 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:07] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:07] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:07] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:07] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:07] KSP residual norm: 2.295850753810044e-15\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:07] Total time step finished in 0.542922 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:07] Beginning time-step 85 [time=0.850000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:07] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 4.504301595852667\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:07] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:07] snes residual assemble (iter 1) finished in 0.029704 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:07] snes jacobian assemble (iter 1) finished in 0.057155 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:07] snes residual assemble (iter 2) finished in 0.027652 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:07] snes jacobian assemble (iter 2) finished in 0.056024 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:07] snes residual assemble (iter 3) finished in 0.028326 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:07] snes jacobian assemble (iter 3) finished in 0.054657 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:07] snes residual assemble (iter 4) finished in 0.029133 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:07] Completed time-step 85 [time=0.850000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:07] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:07] snes jacobian assemble finished in 0.167837 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:07] snes residual assemble finished in 0.114815 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:07] snes total assemble finished in 0.282652 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:07] snes total solve finished in 0.270783 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:07] snes all finished in 0.553436 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:07] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:07] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:07] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:07] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:07] KSP residual norm: 2.1442972658526623e-15\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:07] Total time step finished in 0.554268 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:07] Beginning time-step 86 [time=0.860000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:07] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 4.385772542593713\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:07] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:07] snes residual assemble (iter 1) finished in 0.030720 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:07] snes jacobian assemble (iter 1) finished in 0.055928 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:07] snes residual assemble (iter 2) finished in 0.027335 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:07] snes jacobian assemble (iter 2) finished in 0.053896 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:08] snes residual assemble (iter 3) finished in 0.027952 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:08] snes jacobian assemble (iter 3) finished in 0.052676 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:08] snes residual assemble (iter 4) finished in 0.029908 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:08] Completed time-step 86 [time=0.860000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:08] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:08] snes jacobian assemble finished in 0.162502 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:08] snes residual assemble finished in 0.115917 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:08] snes total assemble finished in 0.278419 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:08] snes total solve finished in 0.243962 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:08] snes all finished in 0.522382 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:08] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:08] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:08] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:08] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:08] KSP residual norm: 1.9874008048214186e-15\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:08] Total time step finished in 0.523213 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:08] Beginning time-step 87 [time=0.870000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:08] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 4.271861239544705\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:08] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:08] snes residual assemble (iter 1) finished in 0.029743 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:08] snes jacobian assemble (iter 1) finished in 0.054592 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:08] snes residual assemble (iter 2) finished in 0.027845 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:08] snes jacobian assemble (iter 2) finished in 0.054513 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:08] snes residual assemble (iter 3) finished in 0.027391 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:08] snes jacobian assemble (iter 3) finished in 0.051930 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:08] snes residual assemble (iter 4) finished in 0.029773 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:08] Completed time-step 87 [time=0.870000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:08] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:08] snes jacobian assemble finished in 0.161037 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:08] snes residual assemble finished in 0.114754 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:08] snes total assemble finished in 0.275791 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:08] snes total solve finished in 0.251394 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:08] snes all finished in 0.527185 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:08] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:08] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:08] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:08] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:08] KSP residual norm: 1.8437369670514415e-15\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:08] Total time step finished in 0.527999 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:08] Beginning time-step 88 [time=0.880000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:08] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 4.162330895690047\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:08] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:08] snes residual assemble (iter 1) finished in 0.029093 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:08] snes jacobian assemble (iter 1) finished in 0.055342 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:09] snes residual assemble (iter 2) finished in 0.029997 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:09] snes jacobian assemble (iter 2) finished in 0.057607 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:09] snes residual assemble (iter 3) finished in 0.028772 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:09] snes jacobian assemble (iter 3) finished in 0.055540 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:09] snes residual assemble (iter 4) finished in 0.034283 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:09] Completed time-step 88 [time=0.880000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:09] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:09] snes jacobian assemble finished in 0.168489 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:09] snes residual assemble finished in 0.122146 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:09] snes total assemble finished in 0.290636 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:09] snes total solve finished in 0.261256 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:09] snes all finished in 0.551892 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:09] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:09] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:09] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:09] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:09] KSP residual norm: 1.7180704970712622e-15\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:09] Total time step finished in 0.552824 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:09] Beginning time-step 89 [time=0.890000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:09] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 4.056959705496865\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:09] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:09] snes residual assemble (iter 1) finished in 0.033025 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:09] snes jacobian assemble (iter 1) finished in 0.056887 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:09] snes residual assemble (iter 2) finished in 0.029120 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:09] snes jacobian assemble (iter 2) finished in 0.057070 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:09] snes residual assemble (iter 3) finished in 0.030447 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:09] snes jacobian assemble (iter 3) finished in 0.056196 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:09] snes residual assemble (iter 4) finished in 0.032179 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:09] Completed time-step 89 [time=0.890000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:09] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:09] snes jacobian assemble finished in 0.170154 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:09] snes residual assemble finished in 0.124772 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:09] snes total assemble finished in 0.294927 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:09] snes total solve finished in 0.265421 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:09] snes all finished in 0.560348 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:09] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:09] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:09] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:09] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:09] KSP residual norm: 1.6063945363392961e-15\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:09] Total time step finished in 0.561324 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:09] Beginning time-step 90 [time=0.900000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:09] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 3.9555397251433533\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:09] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:09] snes residual assemble (iter 1) finished in 0.030589 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:10] snes jacobian assemble (iter 1) finished in 0.058754 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:10] snes residual assemble (iter 2) finished in 0.028655 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:10] snes jacobian assemble (iter 2) finished in 0.057219 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:10] snes residual assemble (iter 3) finished in 0.029228 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:10] snes jacobian assemble (iter 3) finished in 0.054787 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:10] snes residual assemble (iter 4) finished in 0.029844 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:10] Completed time-step 90 [time=0.900000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:10] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:10] snes jacobian assemble finished in 0.170761 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:10] snes residual assemble finished in 0.118318 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:10] snes total assemble finished in 0.289079 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:10] snes total solve finished in 0.261296 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:10] snes all finished in 0.550375 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:10] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:10] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:10] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:10] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:10] KSP residual norm: 1.5064151040076676e-15\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:10] Total time step finished in 0.551271 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:10] Beginning time-step 91 [time=0.910000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:10] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 3.857875845903891\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:10] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:10] snes residual assemble (iter 1) finished in 0.030199 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:10] snes jacobian assemble (iter 1) finished in 0.058623 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:10] snes residual assemble (iter 2) finished in 0.029325 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:10] snes jacobian assemble (iter 2) finished in 0.054527 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:10] snes residual assemble (iter 3) finished in 0.030657 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:10] snes jacobian assemble (iter 3) finished in 0.055278 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:11] snes residual assemble (iter 4) finished in 0.029348 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:11] Completed time-step 91 [time=0.910000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:11] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:11] snes jacobian assemble finished in 0.168429 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:11] snes residual assemble finished in 0.119531 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:11] snes total assemble finished in 0.287960 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:11] snes total solve finished in 0.254321 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:11] snes all finished in 0.542282 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:11] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:11] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:11] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:11] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:11] KSP residual norm: 1.416482885156091e-15\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:11] Total time step finished in 0.543132 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:11] Beginning time-step 92 [time=0.920000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:11] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 3.7637848549479713\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:11] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:11] snes residual assemble (iter 1) finished in 0.031211 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:11] snes jacobian assemble (iter 1) finished in 0.060275 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:11] snes residual assemble (iter 2) finished in 0.029633 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:11] snes jacobian assemble (iter 2) finished in 0.054052 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:11] snes residual assemble (iter 3) finished in 0.030579 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:11] snes jacobian assemble (iter 3) finished in 0.057735 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:11] snes residual assemble (iter 4) finished in 0.028748 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:11] Completed time-step 92 [time=0.920000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:11] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:11] snes jacobian assemble finished in 0.172063 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:11] snes residual assemble finished in 0.120172 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:11] snes total assemble finished in 0.292235 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:11] snes total solve finished in 0.256341 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:11] snes all finished in 0.548577 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:11] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:11] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:11] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:11] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:11] KSP residual norm: 1.3353236699338614e-15\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:11] Total time step finished in 0.549344 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:11] Beginning time-step 93 [time=0.930000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:11] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 3.6730945755721223\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:11] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:11] snes residual assemble (iter 1) finished in 0.028623 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:11] snes jacobian assemble (iter 1) finished in 0.056170 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:11] snes residual assemble (iter 2) finished in 0.029412 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:11] snes jacobian assemble (iter 2) finished in 0.055102 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:12] snes residual assemble (iter 3) finished in 0.029880 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:12] snes jacobian assemble (iter 3) finished in 0.056631 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:12] snes residual assemble (iter 4) finished in 0.028989 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:12] Completed time-step 93 [time=0.930000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:12] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:12] snes jacobian assemble finished in 0.167904 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:12] snes residual assemble finished in 0.116905 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:12] snes total assemble finished in 0.284809 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:12] snes total solve finished in 0.263639 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:12] snes all finished in 0.548449 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:12] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:12] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:12] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:12] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:12] KSP residual norm: 1.261805408721158e-15\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:12] Total time step finished in 0.549103 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:12] Beginning time-step 94 [time=0.940000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:12] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 3.5856430789408478\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:12] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:12] snes residual assemble (iter 1) finished in 0.029702 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:12] snes jacobian assemble (iter 1) finished in 0.055113 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:12] snes residual assemble (iter 2) finished in 0.030901 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:12] snes jacobian assemble (iter 2) finished in 0.058944 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:12] snes residual assemble (iter 3) finished in 0.029252 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:12] snes jacobian assemble (iter 3) finished in 0.056085 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:12] snes residual assemble (iter 4) finished in 0.029318 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:12] Completed time-step 94 [time=0.940000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:12] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:12] snes jacobian assemble finished in 0.170144 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:12] snes residual assemble finished in 0.119174 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:12] snes total assemble finished in 0.289319 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:12] snes total solve finished in 0.261055 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:12] snes all finished in 0.550374 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:12] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:12] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:12] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:12] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:12] KSP residual norm: 1.1949958760964426e-15\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:12] Total time step finished in 0.551068 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:12] Beginning time-step 95 [time=0.950000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:12] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 3.501277960731386\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:12] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:12] snes residual assemble (iter 1) finished in 0.028525 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:12] snes jacobian assemble (iter 1) finished in 0.054818 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:12] snes residual assemble (iter 2) finished in 0.032628 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:13] snes jacobian assemble (iter 2) finished in 0.053081 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:13] snes residual assemble (iter 3) finished in 0.026936 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:13] snes jacobian assemble (iter 3) finished in 0.054120 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:13] snes residual assemble (iter 4) finished in 0.031186 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:13] Completed time-step 95 [time=0.950000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:13] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:13] snes jacobian assemble finished in 0.162020 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:13] snes residual assemble finished in 0.119277 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:13] snes total assemble finished in 0.281297 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:13] snes total solve finished in 0.256015 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:13] snes all finished in 0.537312 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:13] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:13] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:13] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:13] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:13] KSP residual norm: 1.1340693046306903e-15\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:13] Total time step finished in 0.537986 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:13] Beginning time-step 96 [time=0.960000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:13] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 3.419855676759198\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:13] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:13] snes residual assemble (iter 1) finished in 0.029507 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:13] snes jacobian assemble (iter 1) finished in 0.055236 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:13] snes residual assemble (iter 2) finished in 0.028736 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:13] snes jacobian assemble (iter 2) finished in 0.054527 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:13] snes residual assemble (iter 3) finished in 0.028568 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:13] snes jacobian assemble (iter 3) finished in 0.050271 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:13] snes residual assemble (iter 4) finished in 0.027094 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:13] Completed time-step 96 [time=0.960000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:13] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:13] snes jacobian assemble finished in 0.160034 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:13] snes residual assemble finished in 0.113907 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:13] snes total assemble finished in 0.273942 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:13] snes total solve finished in 0.241136 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:13] snes all finished in 0.515079 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:13] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:13] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:13] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:13] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:13] KSP residual norm: 1.0783495614468827e-15\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:13] Total time step finished in 0.515737 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:13] Beginning time-step 97 [time=0.970000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:13] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 3.3412409319112157\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:13] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:13] snes residual assemble (iter 1) finished in 0.027946 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:13] snes jacobian assemble (iter 1) finished in 0.052384 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:14] snes residual assemble (iter 2) finished in 0.027290 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:14] snes jacobian assemble (iter 2) finished in 0.052553 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:14] snes residual assemble (iter 3) finished in 0.027594 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:14] snes jacobian assemble (iter 3) finished in 0.051849 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:14] snes residual assemble (iter 4) finished in 0.029924 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:14] Completed time-step 97 [time=0.970000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:14] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:14] snes jacobian assemble finished in 0.156786 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:14] snes residual assemble finished in 0.112755 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:14] snes total assemble finished in 0.269541 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:14] snes total solve finished in 0.235106 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:14] snes all finished in 0.504648 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:14] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:14] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:14] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:14] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:14] KSP residual norm: 1.0271842670499808e-15\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:14] Total time step finished in 0.505439 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:14] Beginning time-step 98 [time=0.980000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:14] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 3.2653061178052667\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:14] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:14] snes residual assemble (iter 1) finished in 0.029458 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:14] snes jacobian assemble (iter 1) finished in 0.055361 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:14] snes residual assemble (iter 2) finished in 0.027739 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:14] snes jacobian assemble (iter 2) finished in 0.052523 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:14] snes residual assemble (iter 3) finished in 0.028053 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:14] snes jacobian assemble (iter 3) finished in 0.052618 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:14] snes residual assemble (iter 4) finished in 0.027047 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:14] Completed time-step 98 [time=0.980000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:14] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:14] snes jacobian assemble finished in 0.160503 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:14] snes residual assemble finished in 0.112298 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:14] snes total assemble finished in 0.272802 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:14] snes total solve finished in 0.235834 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:14] snes all finished in 0.508636 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:14] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:14] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:14] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:14] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:14] KSP residual norm: 9.80051326253432e-16\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:14] Total time step finished in 0.509384 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:14] Beginning time-step 99 [time=0.990000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:14] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 3.1919307945941\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:14] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:14] snes residual assemble (iter 1) finished in 0.026516 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:14] snes jacobian assemble (iter 1) finished in 0.051752 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:15] snes residual assemble (iter 2) finished in 0.027563 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:15] snes jacobian assemble (iter 2) finished in 0.053544 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:15] snes residual assemble (iter 3) finished in 0.027021 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:15] snes jacobian assemble (iter 3) finished in 0.051696 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:15] snes residual assemble (iter 4) finished in 0.027175 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:15] Completed time-step 99 [time=0.990000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:15] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:15] snes jacobian assemble finished in 0.156993 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:15] snes residual assemble finished in 0.108277 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:15] snes total assemble finished in 0.265270 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:15] snes total solve finished in 0.231434 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:15] snes all finished in 0.496704 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:15] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:15] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:15] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:15] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:15] KSP residual norm: 9.365141498751655e-16\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:15] Total time step finished in 0.497305 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:15] Beginning time-step 100 [time=1.000000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:15] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 3.1210012131509757\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:15] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:15] snes residual assemble (iter 1) finished in 0.027411 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:15] snes jacobian assemble (iter 1) finished in 0.052352 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:15] snes residual assemble (iter 2) finished in 0.027559 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:15] snes jacobian assemble (iter 2) finished in 0.053880 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:15] snes residual assemble (iter 3) finished in 0.029628 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:15] snes jacobian assemble (iter 3) finished in 0.057951 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:15] snes residual assemble (iter 4) finished in 0.027938 s\u001b[0m \u001b[97m\u001b[0m\n", - "\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-28 time=02:40:15] Completed time-step 100 [time=1.000000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", - "\u001b[36m.......................................................................................................................\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:15] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:15] snes jacobian assemble finished in 0.164184 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:15] snes residual assemble finished in 0.112537 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:15] snes total assemble finished in 0.276722 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:15] snes total solve finished in 0.261370 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:15] snes all finished in 0.538092 s\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:15] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:15] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:15] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:15] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[32m[2023-02-28 time=02:40:15] KSP residual norm: 8.961183713675185e-16\u001b[0m \u001b[97m\u001b[0m\n", - "\u001b[31m[2023-02-28 time=02:40:15] Total time step finished in 0.538764 s\u001b[0m \u001b[97m\u001b[0m\n" - ] - } - ], + "outputs": [], "source": [ - "\n", "pc, sc, cc, rc = make_model()\n", "\n", "# =============================================================================================\n", @@ -4237,7 +235,7 @@ { "cell_type": "code", "execution_count": null, - "id": "b54d28ca", + "id": "644b1304", "metadata": {}, "outputs": [], "source": [] diff --git a/examples/example1/example1_sphere.ipynb b/examples/example1/example1_sphere.ipynb new file mode 100644 index 00000000..72858732 --- /dev/null +++ b/examples/example1/example1_sphere.ipynb @@ -0,0 +1,3796 @@ +{ + "cells": [ + { + "attachments": {}, + "cell_type": "markdown", + "id": "f65f18d7", + "metadata": {}, + "source": [ + "# Simple example showcasing some of the features of STUBS\n", + "\n", + "Geometry is divided into 4 domains; two volumes, and two surfaces:\n", + "- PM\n", + "- Cytosol\n", + "- Cytosol\n", + "\n", + "There are three function-spaces on the three domains:\n", + "```\n", + "- u[Cyto] = [A, B]\n", + "- u[ERm] = [R, Ro]\n", + "- u[ER] = [AER]\n", + "```\n", + "\n", + "Roughly, this model is similar to an IP3 pulse at the PM, leading to Ca2+ release at the ER" + ] + }, + { + "cell_type": "code", + "execution_count": 5, + "id": "cc398816", + "metadata": {}, + "outputs": [], + "source": [ + "import os\n", + "\n", + "import dolfin as d\n", + "import sympy as sym\n", + "\n", + "from stubs import unit, config, common, mesh, model\n", + "from stubs.model_assembly import Compartment, Parameter, Reaction, Species" + ] + }, + { + "attachments": {}, + "cell_type": "markdown", + "id": "95b9d865", + "metadata": {}, + "source": [ + "First, we define the various units for the inputs" + ] + }, + { + "cell_type": "code", + "execution_count": 6, + "id": "4f4023cf", + "metadata": {}, + "outputs": [], + "source": [ + "# Aliases - base units\n", + "uM = unit.uM\n", + "um = unit.um\n", + "molecule = unit.molecule\n", + "sec = unit.sec\n", + "# Aliases - units used in model\n", + "D_unit = um**2 / sec\n", + "flux_unit = molecule / (um**2 * sec)\n", + "vol_unit = uM\n", + "surf_unit = molecule / um**2" + ] + }, + { + "attachments": {}, + "cell_type": "markdown", + "id": "46582d26", + "metadata": {}, + "source": [ + "Next we generate the model." + ] + }, + { + "cell_type": "code", + "execution_count": 7, + "id": "09079b17", + "metadata": {}, + "outputs": [], + "source": [ + "def make_model():\n", + " # =============================================================================================\n", + " # Species\n", + " # =============================================================================================\n", + " # name, initial concentration, concentration units, diffusion, diffusion units, compartment\n", + " A = Species(\"A\", 0.01, vol_unit, 1.0, D_unit, \"Cyto\")\n", + " B = Species(\"B\", 0.0, vol_unit, 1.0, D_unit, \"Cyto\")\n", + " AER = Species(\"AER\", 200.0, vol_unit, 5.0, D_unit, \"ER\")\n", + "\n", + " # Lets create an algebraic expression to define the initial condition of R\n", + " Rinit = \"(sin(40*y) + cos(40*z) + sin(40*x) + 3) * (y-x)**2\"\n", + " R1 = Species(\"R1\", Rinit, surf_unit, 0.02, D_unit, \"ERm\")\n", + " R1o = Species(\"R1o\", 0.0, surf_unit, 0.02, D_unit, \"ERm\")\n", + " # R2 = Species('R2' , Rinit, surf_unit, 0 , D_unit, 'ERm')\n", + "\n", + " # =============================================================================================\n", + " # Compartments\n", + " # =============================================================================================\n", + " # name, topological dimensionality, length scale units, marker value\n", + " Cyto = Compartment(\"Cyto\", 3, um, 1)\n", + " PM = Compartment(\"PM\", 2, um, 10)\n", + " ER = Compartment(\"ER\", 3, um, 2)\n", + " ERm = Compartment(\"ERm\", 2, um, 12)\n", + "\n", + " # =============================================================================================\n", + " # Parameters and Reactions\n", + " # =============================================================================================\n", + " # Pulse function for B input at the PM\n", + " # One way to prescribe a \"pulse-like\" flux is to define the flux as the derivative of a sigmoid\n", + " # (here we choose atan as the sigmoid because of its simple derivative)\n", + " Vmax, t0, m = 500, 0.1, 200\n", + " t = sym.symbols(\"t\")\n", + " pulseI = Vmax * sym.atan(m * (t - t0))\n", + " pulse = sym.diff(pulseI, t)\n", + " j1pulse = Parameter.from_expression(\n", + " \"j1pulse\", pulse, flux_unit, use_preintegration=True, preint_sym_expr=pulseI\n", + " )\n", + " r1 = Reaction(\n", + " \"r1\",\n", + " [],\n", + " [\"B\"],\n", + " param_map={\"J\": \"j1pulse\"},\n", + " eqn_f_str=\"J\",\n", + " explicit_restriction_to_domain=\"PM\",\n", + " )\n", + "\n", + " # Degradation of B in the cytosol\n", + " k2f = Parameter(\"k2f\", 10, 1 / sec)\n", + " r2 = Reaction(\n", + " \"r2\", [\"B\"], [], param_map={\"on\": \"k2f\"}, reaction_type=\"mass_action_forward\"\n", + " )\n", + "\n", + " # Activating receptors on ERm with B\n", + " k3f = Parameter(\"k3f\", 100, 1 / (uM * sec))\n", + " k3r = Parameter(\"k3r\", 100, 1 / sec)\n", + " r3 = Reaction(\"r3\", [\"B\", \"R1\"], [\"R1o\"], {\"on\": \"k3f\", \"off\": \"k3r\"})\n", + "\n", + " # Release of A from ERm to cytosol\n", + " k4Vmax = Parameter(\"k4Vmax\", 2000, 1 / (uM * sec))\n", + " r4 = Reaction(\n", + " \"r4\",\n", + " [\"AER\"],\n", + " [\"A\"],\n", + " param_map={\"Vmax\": \"k4Vmax\"},\n", + " species_map={\"R1o\": \"R1o\", \"uER\": \"AER\", \"u\": \"A\"},\n", + " eqn_f_str=\"Vmax*R1o*(uER-u)\",\n", + " )\n", + " # explicit_restriction_to_domain='ERm')\n", + "\n", + " # =============================================================================================\n", + " # Gather all parameters, species, compartments and reactions\n", + " # =============================================================================================\n", + " return common.sbmodel_from_locals(locals().values())" + ] + }, + { + "attachments": {}, + "cell_type": "markdown", + "id": "15c35d39", + "metadata": {}, + "source": [ + "We load the model generated above, and load in the mesh we will use in this example." + ] + }, + { + "cell_type": "code", + "execution_count": 8, + "id": "fe56e162", + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "\u001b[32m[2023-02-12 time=17:54:58] Creating dolfin object for space-dependent initial condition R1\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[35m!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\u001b[0m\n", + "\u001b[35m!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\u001b[0m\n", + "\u001b[35m!!!!!\u001b[0m \u001b[31m[2023-02-12 time=17:54:58] Warning! Pre-integrating parameter j1pulse. Make sure that expressions j1pulse appears in have no other time-dependent variables.\u001b[0m \u001b[35m!!!!!\u001b[0m\n", + "\u001b[35m!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\u001b[0m\n", + "\u001b[35m!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\u001b[0m\n", + "\n", + "\n", + "\u001b[35m!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\u001b[0m\n", + "\u001b[35m!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\u001b[0m\n", + "\u001b[35m!!!!!\u001b[0m \u001b[31m[2023-02-12 time=17:54:58] Warning! Pre-integrating parameter j1pulse. Make sure that expressions j1pulse appears in have no other time-dependent variables.\u001b[0m \u001b[35m!!!!!\u001b[0m\n", + "\u001b[35m!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\u001b[0m\n", + "\u001b[35m!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\u001b[0m\n", + "\n", + "\u001b[32m[2023-02-12 time=17:54:58] Time-dependent parameter j1pulse evaluated from expression.\u001b[0m \u001b[97m\u001b[0m\n", + "Info : Meshing 1D...\n", + "Info : [ 20%] Meshing curve 2 (Circle)\n", + "Info : [ 70%] Meshing curve 5 (Circle)\n", + "Info : Done meshing 1D (Wall 0.000271368s, CPU 0.000336s)\n", + "Info : Meshing 2D...\n", + "Info : [ 0%] Meshing surface 1 (Sphere, Frontal-Delaunay)\n", + "Info : [ 50%] Meshing surface 2 (Sphere, Frontal-Delaunay)\n", + "Info : Done meshing 2D (Wall 0.0113163s, CPU 0.012048s)\n", + "Info : Meshing 3D...\n", + "Info : 3D Meshing 2 volumes with 1 connected component\n", + "Info : Tetrahedrizing 204 nodes...\n", + "Info : Done tetrahedrizing 212 nodes (Wall 0.00155083s, CPU 0.001382s)\n", + "Info : Reconstructing mesh...\n", + "Info : - Creating surface mesh\n", + "Info : - Identifying boundary edges\n", + "Info : - Recovering boundary\n", + "Info : Done reconstructing mesh (Wall 0.0035217s, CPU 0.003203s)\n", + "Info : Found volume 4\n", + "Info : Found volume 3\n", + "Info : It. 0 - 0 nodes created - worst tet radius 1.71777 (nodes removed 0 0)\n", + "Info : 3D refinement terminated (207 nodes total):\n", + "Info : - 0 Delaunay cavities modified for star shapeness\n", + "Info : - 1 nodes could not be inserted\n", + "Info : - 668 tetrahedra created in 0.000254325 sec. (2626560 tets/s)\n", + "Info : Done meshing 3D (Wall 0.00618675s, CPU 0.005609s)\n", + "Info : Optimizing mesh...\n", + "Info : Optimizing volume 3\n", + "Info : Optimization starts (volume = 0.449211) with worst = 0.0606575 / average = 0.679682:\n", + "Info : 0.00 < quality < 0.10 : 3 elements\n", + "Info : 0.10 < quality < 0.20 : 4 elements\n", + "Info : 0.20 < quality < 0.30 : 7 elements\n", + "Info : 0.30 < quality < 0.40 : 7 elements\n", + "Info : 0.40 < quality < 0.50 : 21 elements\n", + "Info : 0.50 < quality < 0.60 : 50 elements\n", + "Info : 0.60 < quality < 0.70 : 188 elements\n", + "Info : 0.70 < quality < 0.80 : 285 elements\n", + "Info : 0.80 < quality < 0.90 : 20 elements\n", + "Info : 0.90 < quality < 1.00 : 5 elements\n", + "Info : 13 edge swaps, 0 node relocations (volume = 0.449211): worst = 0.128906 / average = 0.689683 (Wall 0.000271187s, CPU 0.000316s)\n", + "Info : 15 edge swaps, 0 node relocations (volume = 0.449211): worst = 0.128906 / average = 0.691723 (Wall 0.000386487s, CPU 0.00045s)\n", + "Info : No ill-shaped tets in the mesh :-)\n", + "Info : 0.00 < quality < 0.10 : 0 elements\n", + "Info : 0.10 < quality < 0.20 : 1 elements\n", + "Info : 0.20 < quality < 0.30 : 0 elements\n", + "Info : 0.30 < quality < 0.40 : 8 elements\n", + "Info : 0.40 < quality < 0.50 : 17 elements\n", + "Info : 0.50 < quality < 0.60 : 49 elements\n", + "Info : 0.60 < quality < 0.70 : 193 elements\n", + "Info : 0.70 < quality < 0.80 : 286 elements\n", + "Info : 0.80 < quality < 0.90 : 20 elements\n", + "Info : 0.90 < quality < 1.00 : 5 elements\n", + "Info : Optimizing volume 4\n", + "Info : Optimization starts (volume = 0.0562738) with worst = 0.381159 / average = 0.769699:\n", + "Info : 0.00 < quality < 0.10 : 0 elements\n", + "Info : 0.10 < quality < 0.20 : 0 elements\n", + "Info : 0.20 < quality < 0.30 : 0 elements\n", + "Info : 0.30 < quality < 0.40 : 2 elements\n", + "Info : 0.40 < quality < 0.50 : 1 elements\n", + "Info : 0.50 < quality < 0.60 : 0 elements\n", + "Info : 0.60 < quality < 0.70 : 7 elements\n", + "Info : 0.70 < quality < 0.80 : 39 elements\n", + "Info : 0.80 < quality < 0.90 : 29 elements\n", + "Info : 0.90 < quality < 1.00 : 0 elements\n", + "Info : No ill-shaped tets in the mesh :-)\n", + "Info : 0.00 < quality < 0.10 : 0 elements\n", + "Info : 0.10 < quality < 0.20 : 0 elements\n", + "Info : 0.20 < quality < 0.30 : 0 elements\n", + "Info : 0.30 < quality < 0.40 : 2 elements\n", + "Info : 0.40 < quality < 0.50 : 1 elements\n", + "Info : 0.50 < quality < 0.60 : 0 elements\n", + "Info : 0.60 < quality < 0.70 : 7 elements\n", + "Info : 0.70 < quality < 0.80 : 39 elements\n", + "Info : 0.80 < quality < 0.90 : 29 elements\n", + "Info : 0.90 < quality < 1.00 : 0 elements\n", + "Info : Done optimizing mesh (Wall 0.000861953s, CPU 0.000951s)\n", + "Info : 207 nodes 1076 elements\n", + "Info : Refining mesh...\n", + "Info : Meshing order 2 (curvilinear on)...\n", + "Info : [ 0%] Meshing curve 1 order 2\n", + "Info : [ 10%] Meshing curve 2 order 2\n", + "Info : [ 20%] Meshing curve 3 order 2\n", + "Info : [ 30%] Meshing curve 4 order 2\n", + "Info : [ 40%] Meshing curve 5 order 2\n", + "Info : [ 50%] Meshing curve 6 order 2\n", + "Info : [ 60%] Meshing surface 1 order 2\n", + "Info : [ 70%] Meshing surface 2 order 2\n", + "Info : [ 80%] Meshing volume 3 order 2\n", + "Info : [ 90%] Meshing volume 4 order 2\n", + "Info : Surface mesh: worst distortion = 0.739612 (0 elements in ]0, 0.2]); worst gamma = 0.35452\n", + "Info : Done meshing order 2 (Wall 0.00335776s, CPU 0.004004s)\n", + "Info : Done refining mesh (Wall 0.00575648s, CPU 0.007508s)\n", + "Info : Writing 'twoSpheres.msh'...\n", + "Info : Done writing 'twoSpheres.msh'\n", + "\n", + "HDF5 mesh, \"parent_mesh\", successfully loaded from file: mesh/DemoSpheresMesh.h5!\n", + "['FFC', 'UFL', 'djitso', 'dolfin']\n", + "['FFC', 'UFL', 'djitso', 'dolfin']\n", + "\n", + "\u001b[36m======================================================================================================================\u001b[0m\n", + "\u001b[36m========================\u001b[0m \u001b[35m[2023-02-12 time=17:54:58] Checking validity of model (step 1 of ZZ)\u001b[0m \u001b[36m========================\u001b[0m\n", + "\u001b[36m======================================================================================================================\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:54:58] Check that mesh/compartment dimensionalities match\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:54:58] Checking for namespace conflicts\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[36m=====================\u001b[0m \u001b[35m[2023-02-12 time=17:54:58] Step 1 of initialization completed successfully!\u001b[0m \u001b[36m=====================\u001b[0m\n", + "\n", + "\u001b[36m=======================================================================================================================\u001b[0m\n", + "\u001b[36m=================\u001b[0m \u001b[35m[2023-02-12 time=17:54:58] Cross-Container Dependent Initializations (step 2 of ZZ)\u001b[0m \u001b[36m=================\u001b[0m\n", + "\u001b[36m=======================================================================================================================\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:54:58] Turning reactions into unsigned symbolic flux strings\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:54:58] Make sure all reactions have parameters/species defined\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:54:58] Linking parameters, species, and compartments to reactions\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:54:58] Checking for unused parameters, species, or compartments\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:54:58] Linking compartments and compartment dimensionality to species\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:54:58] Linking species to compartments\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:54:58] Getting indices for species for each compartment\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[36m=====================\u001b[0m \u001b[35m[2023-02-12 time=17:54:58] Step 2 of initialization completed successfully!\u001b[0m \u001b[36m=====================\u001b[0m\n", + "\n", + "\u001b[36m======================================================================================================================\u001b[0m\n", + "\u001b[36m=======================\u001b[0m \u001b[35m[2023-02-12 time=17:54:58] Mesh-related Initializations (step 3 of ZZ)\u001b[0m \u001b[36m=======================\u001b[0m\n", + "\u001b[36m======================================================================================================================\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:54:58] Defining child meshes\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:54:58] Defining parent mesh functions\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:54:58] Extracting submeshes using MeshView\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:54:58] Building MeshView mappings between all child mesh pairs\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[35m!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\u001b[0m\n", + "\u001b[35m!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\u001b[0m\n", + "\u001b[35m!!!!!!!!!!!!!!!!!!!!!!!!!\u001b[0m \u001b[31m[2023-02-12 time=17:54:58] DEBUGGING 3_5, 3_6 (mesh intersections)\u001b[0m \u001b[35m!!!!!!!!!!!!!!!!!!!!!!!!!\u001b[0m\n", + "\u001b[35m!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\u001b[0m\n", + "\u001b[35m!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\u001b[0m\n", + "\n", + "\u001b[32m[2023-02-12 time=17:54:58] Getting integration measures for parent mesh and child meshes\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[97m.....................\u001b[0m \u001b[35m[2023-02-12 time=17:54:58] Step 3 of initialization completed successfully!\u001b[0m \u001b[97m.....................\u001b[0m\n", + "\n", + "\u001b[36m======================================================================================================================\u001b[0m\n", + "\u001b[36m==========================\u001b[0m \u001b[35m[2023-02-12 time=17:54:58] Dolfin Initializations (step 4 of ZZ)\u001b[0m \u001b[36m==========================\u001b[0m\n", + "\u001b[36m======================================================================================================================\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:54:58] Defining dolfin function spaces for compartments\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:54:58] Defining function space for ERm (dim: 2, species: 2, dofs: 0)\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:54:58] Defining function space for ER (dim: 3, species: 1, dofs: 0)\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:54:58] Defining function space for Cyto (dim: 3, species: 2, dofs: 0)\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:54:58] Defining dolfin functions\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:54:58] Extracting subfunctions/function spaces/dofmap for each species\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:54:58] Naming functions and subfunctions\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:54:58] Checking that dolfin functions were created correctly\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:54:58] Set function values to initial conditions\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m======================================================================================================================\u001b[0m\n", + "\u001b[36m================\u001b[0m \u001b[35m[2023-02-12 time=17:54:58] Dolfin fluxes, forms, and problems+solvers (step 5 of ZZ)\u001b[0m \u001b[36m================\u001b[0m\n", + "\u001b[36m======================================================================================================================\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:54:58] Convert reactions to flux objects\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:54:58] Getting fluxes for reaction r4\u001b[0m \u001b[97m\u001b[0m\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "Warning : Volume mesh: worst distortion = -1.27523 (avg = 0.94385, 1 elements with jac. < 0)\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "\n", + "\u001b[32m[2023-02-12 time=17:54:58] Flux r4 [AER (f)] scaled by 0.0016605390404271648 micrometer ** 3 * micromolar / molecule\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:54:58] Old flux units: 1.0 micrometer * micromolar / second\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:54:58] New flux units: 1.0 micrometer * micromolar / second\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\n", + "DEBUGGING INTEGRATION MEASURE (only fully defined domains are enabled for now)\n", + "\n", + "\u001b[32m[2023-02-12 time=17:54:58] Flux r4 [A (f)] scaled by 0.0016605390404271648 micrometer ** 3 * micromolar / molecule\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:54:58] Old flux units: 1.0 micrometer * micromolar / second\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:54:58] New flux units: 1.0 micrometer * micromolar / second\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\n", + "DEBUGGING INTEGRATION MEASURE (only fully defined domains are enabled for now)\n", + "\u001b[32m[2023-02-12 time=17:54:58] Getting fluxes for reaction r3\u001b[0m \u001b[97m\u001b[0m\n", + "DEBUGGING INTEGRATION MEASURE (only fully defined domains are enabled for now)\n", + "DEBUGGING INTEGRATION MEASURE (only fully defined domains are enabled for now)\n", + "DEBUGGING INTEGRATION MEASURE (only fully defined domains are enabled for now)\n", + "DEBUGGING INTEGRATION MEASURE (only fully defined domains are enabled for now)\n", + "\n", + "\u001b[32m[2023-02-12 time=17:54:58] Flux r3 [B (f)] scaled by 0.0016605390404271648 micrometer ** 3 * micromolar / molecule\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:54:58] Old flux units: 1.0 micrometer * micromolar / second\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:54:58] New flux units: 1.0 micrometer * micromolar / second\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\n", + "DEBUGGING INTEGRATION MEASURE (only fully defined domains are enabled for now)\n", + "\n", + "\u001b[32m[2023-02-12 time=17:54:58] Flux r3 [B (r)] scaled by 0.0016605390404271648 micrometer ** 3 * micromolar / molecule\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:54:58] Old flux units: 1.0 micrometer * micromolar / second\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:54:58] New flux units: 1.0 micrometer * micromolar / second\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\n", + "DEBUGGING INTEGRATION MEASURE (only fully defined domains are enabled for now)\n", + "\u001b[32m[2023-02-12 time=17:54:58] Getting fluxes for reaction r2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:54:58] Getting fluxes for reaction r1\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[32m[2023-02-12 time=17:54:58] Flux r1 [B (f)] scaled by 0.0016605390404271648 micrometer ** 3 * micromolar / molecule\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:54:58] Old flux units: 1.0 micrometer * micromolar / second\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:54:58] New flux units: 1.0 micrometer * micromolar / second\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\n", + "DEBUGGING INTEGRATION MEASURE (only fully defined domains are enabled for now)\n", + "\u001b[32m[2023-02-12 time=17:54:58] Creating functional forms\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:54:58] Compartment PM has no diffusive forms.\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m=======================================================================================================================\u001b[0m\n", + "\u001b[36m==============================\u001b[0m \u001b[35m[2023-02-12 time=17:54:58] Model finished initialization!\u001b[0m \u001b[36m==============================\u001b[0m\n", + "\u001b[36m=======================================================================================================================\u001b[0m\n", + "╒═════════╤═════════════════════════╤═════════════════════╤═════════════════════════════════╤═════════╤═════════╕\n", + "│ │ quantity │ is_time_dependent │ sym_expr │ notes │ group │\n", + "╞═════════╪═════════════════════════╪═════════════════════╪═════════════════════════════════╪═════════╪═════════╡\n", + "│ k4Vmax │ 2.00×10³ 1/s/µM │ False │ │ │ │\n", + "├─────────┼─────────────────────────┼─────────────────────┼─────────────────────────────────┼─────────┼─────────┤\n", + "│ k3r │ 1.00×10² 1/s │ False │ │ │ │\n", + "├─────────┼─────────────────────────┼─────────────────────┼─────────────────────────────────┼─────────┼─────────┤\n", + "│ k3f │ 1.00×10² 1/s/µM │ False │ │ │ │\n", + "├─────────┼─────────────────────────┼─────────────────────┼─────────────────────────────────┼─────────┼─────────┤\n", + "│ k2f │ 1.00×10¹ 1/s │ False │ │ │ │\n", + "├─────────┼─────────────────────────┼─────────────────────┼─────────────────────────────────┼─────────┼─────────┤\n", + "│ j1pulse │ 2.49×10² molecule/s/µm² │ True │ 100000/(40000*(t - 0.1)**2 + 1) │ │ │\n", + "╘═════════╧═════════════════════════╧═════════════════════╧═════════════════════════════════╧═════════╧═════════╛\n", + "╒═════╤════════════════════╤═════════════╤═════════════════╕\n", + "│ │ compartment_name │ dof_index │ Diffusion │\n", + "╞═════╪════════════════════╪═════════════╪═════════════════╡\n", + "│ R1o │ ERm │ 0 │ 2.00×10⁻² µm²/s │\n", + "├─────┼────────────────────┼─────────────┼─────────────────┤\n", + "│ R1 │ ERm │ 1 │ 2.00×10⁻² µm²/s │\n", + "├─────┼────────────────────┼─────────────┼─────────────────┤\n", + "│ AER │ ER │ 0 │ 5.00×10⁰ µm²/s │\n", + "├─────┼────────────────────┼─────────────┼─────────────────┤\n", + "│ B │ Cyto │ 0 │ 1.00×10⁰ µm²/s │\n", + "├─────┼────────────────────┼─────────────┼─────────────────┤\n", + "│ A │ Cyto │ 1 │ 1.00×10⁰ µm²/s │\n", + "╘═════╧════════════════════╧═════════════╧═════════════════╛\n", + "╒══════╤═══════════╤══════════════════╤═══════════════╤════════════════╤════════════╤══════════════════╤═════════════╤═══════════════╤═══════════════╕\n", + "│ │ mesh_id │ dimensionality │ num_species │ num_vertices │ num_dofs │ num_dofs_local │ num_cells │ cell_marker │ nvolume │\n", + "╞══════╪═══════════╪══════════════════╪═══════════════╪════════════════╪════════════╪══════════════════╪═════════════╪═══════════════╪═══════════════╡\n", + "│ ERm │ 83 │ 2 │ 2 │ 158 │ 316 │ 316 │ 312 │ 12 │ 7.70×10⁻¹ µm² │\n", + "├──────┼───────────┼──────────────────┼───────────────┼────────────────┼────────────┼──────────────────┼─────────────┼───────────────┼───────────────┤\n", + "│ ER │ 89 │ 3 │ 1 │ 200 │ 200 │ 200 │ 624 │ 2 │ 6.30×10⁻² µm³ │\n", + "├──────┼───────────┼──────────────────┼───────────────┼────────────────┼────────────┼──────────────────┼─────────────┼───────────────┼───────────────┤\n", + "│ PM │ 95 │ 2 │ 0 │ 646 │ 0 │ 0 │ 1288 │ 10 │ 3.13×10⁰ µm² │\n", + "├──────┼───────────┼──────────────────┼───────────────┼────────────────┼────────────┼──────────────────┼─────────────┼───────────────┼───────────────┤\n", + "│ Cyto │ 101 │ 3 │ 2 │ 1189 │ 2378 │ 2378 │ 4632 │ 1 │ 4.56×10⁻¹ µm³ │\n", + "╘══════╧═══════════╧══════════════════╧═══════════════╧════════════════╧════════════╧══════════════════╧═════════════╧═══════════════╧═══════════════╛\n", + "╒════╤═════════════╤══════╤══════════════════╤═════════════╤══════════════╤════════════════╕\n", + "│ │ name │ id │ dimensionality │ num_cells │ num_facets │ num_vertices │\n", + "╞════╪═════════════╪══════╪══════════════════╪═════════════╪══════════════╪════════════════╡\n", + "│ 0 │ parent_mesh │ 69 │ 3 │ 5256 │ 11156 │ 1231 │\n", + "├────┼─────────────┼──────┼──────────────────┼─────────────┼──────────────┼────────────────┤\n", + "│ 1 │ ERm │ 83 │ 2 │ 312 │ 468 │ 158 │\n", + "├────┼─────────────┼──────┼──────────────────┼─────────────┼──────────────┼────────────────┤\n", + "│ 2 │ ER │ 89 │ 3 │ 624 │ 1404 │ 200 │\n", + "├────┼─────────────┼──────┼──────────────────┼─────────────┼──────────────┼────────────────┤\n", + "│ 3 │ PM │ 95 │ 2 │ 1288 │ 0 │ 646 │\n", + "├────┼─────────────┼──────┼──────────────────┼─────────────┼──────────────┼────────────────┤\n", + "│ 4 │ Cyto │ 101 │ 3 │ 4632 │ 10064 │ 1189 │\n", + "╘════╧═════════════╧══════╧══════════════════╧═════════════╧══════════════╧════════════════╛\n", + "╒════╤═════════════╤═════════╤═══════════════════════╤═════════════╕\n", + "│ │ lhs │ rhs │ eqn_f_str │ eqn_r_str │\n", + "╞════╪═════════════╪═════════╪═══════════════════════╪═════════════╡\n", + "│ r4 │ ['AER'] │ ['A'] │ R1o*k4Vmax*(-A + AER) │ │\n", + "├────┼─────────────┼─────────┼───────────────────────┼─────────────┤\n", + "│ r3 │ ['B', 'R1'] │ ['R1o'] │ k3f*B*R1 │ k3r*R1o │\n", + "├────┼─────────────┼─────────┼───────────────────────┼─────────────┤\n", + "│ r2 │ ['B'] │ [] │ k2f*B │ │\n", + "├────┼─────────────┼─────────┼───────────────────────┼─────────────┤\n", + "│ r1 │ [] │ ['B'] │ j1pulse │ │\n", + "╘════╧═════════════╧═════════╧═══════════════════════╧═════════════╛\n", + "\u001b[32m[2023-02-12 time=17:54:58] Formulating problem as F(u;v) == 0 for newton iterations\u001b[0m \u001b[97m\u001b[0m\n", + "Calling FFC just-in-time (JIT) compiler, this may take some time.\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/usr/lib/python3/dist-packages/pandas/core/dtypes/cast.py:1784: UnitStrippedWarning: The unit of the quantity is stripped when downcasting to ndarray.\n", + " result[:] = values\n", + "/root/shared/gitrepos/stubs-dev/stubs/model_assembly.py:188: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", + " df = df.append(\n", + "/usr/lib/python3/dist-packages/pandas/core/dtypes/cast.py:1784: UnitStrippedWarning: The unit of the quantity is stripped when downcasting to ndarray.\n", + " result[:] = values\n", + "/root/shared/gitrepos/stubs-dev/stubs/model_assembly.py:188: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", + " df = df.append(\n", + "/usr/lib/python3/dist-packages/pandas/core/dtypes/cast.py:1784: UnitStrippedWarning: The unit of the quantity is stripped when downcasting to ndarray.\n", + " result[:] = values\n", + "/root/shared/gitrepos/stubs-dev/stubs/model_assembly.py:188: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", + " df = df.append(\n", + "/usr/lib/python3/dist-packages/pandas/core/dtypes/cast.py:1784: UnitStrippedWarning: The unit of the quantity is stripped when downcasting to ndarray.\n", + " result[:] = values\n", + "/root/shared/gitrepos/stubs-dev/stubs/model_assembly.py:188: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", + " df = df.append(\n", + "/usr/lib/python3/dist-packages/pandas/core/dtypes/cast.py:1784: UnitStrippedWarning: The unit of the quantity is stripped when downcasting to ndarray.\n", + " result[:] = values\n", + "/root/shared/gitrepos/stubs-dev/stubs/model_assembly.py:188: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", + " df = df.append(\n", + "/usr/lib/python3/dist-packages/pandas/core/dtypes/cast.py:1784: UnitStrippedWarning: The unit of the quantity is stripped when downcasting to ndarray.\n", + " result[:] = values\n", + "/root/shared/gitrepos/stubs-dev/stubs/model_assembly.py:188: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", + " df = df.append(\n", + "/usr/lib/python3/dist-packages/pandas/core/dtypes/cast.py:1784: UnitStrippedWarning: The unit of the quantity is stripped when downcasting to ndarray.\n", + " result[:] = values\n", + "/root/shared/gitrepos/stubs-dev/stubs/model_assembly.py:188: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. 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Use pandas.concat instead.\n", + " df = df.append(\n", + "/usr/lib/python3/dist-packages/pandas/core/dtypes/cast.py:1784: UnitStrippedWarning: The unit of the quantity is stripped when downcasting to ndarray.\n", + " result[:] = values\n", + "/root/shared/gitrepos/stubs-dev/stubs/model_assembly.py:188: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", + " df = df.append(\n", + "/usr/lib/python3/dist-packages/pandas/core/dtypes/cast.py:1784: UnitStrippedWarning: The unit of the quantity is stripped when downcasting to ndarray.\n", + " result[:] = values\n", + "/root/shared/gitrepos/stubs-dev/stubs/model_assembly.py:188: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. 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Use pandas.concat instead.\n", + " df = df.append(tempseries, ignore_index=True)\n", + "/root/shared/gitrepos/stubs-dev/stubs/model.py:2412: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", + " df = df.append(tempseries, ignore_index=True)\n", + "/root/shared/gitrepos/stubs-dev/stubs/model.py:2412: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", + " df = df.append(tempseries, ignore_index=True)\n", + "/root/shared/gitrepos/stubs-dev/stubs/model.py:2412: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", + " df = df.append(tempseries, ignore_index=True)\n", + "/root/shared/gitrepos/stubs-dev/stubs/model_assembly.py:188: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", + " df = df.append(\n", + "/root/shared/gitrepos/stubs-dev/stubs/model_assembly.py:188: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", + " df = df.append(\n", + "/root/shared/gitrepos/stubs-dev/stubs/model_assembly.py:188: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", + " df = df.append(\n", + "/root/shared/gitrepos/stubs-dev/stubs/model_assembly.py:188: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", + " df = df.append(\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Calling FFC just-in-time (JIT) compiler, this may take some time.\n", + "\u001b[31m[2023-02-12 time=17:55:00] J01 = dF[ERm])/du[ER] is empty\u001b[0m \u001b[97m\u001b[0m\n", + "Calling FFC just-in-time (JIT) compiler, this may take some time.\n", + "\u001b[32m[2023-02-12 time=17:55:01] Initial L2-norm of compartment ERm is 0.06657360435166532\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:01] Initial L2-norm of compartment ER is 0.0\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:01] Initial L2-norm of compartment Cyto is 0.05146544708207531\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:01] Using SNES solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:01] cpu 0: (ijk)=(0, 0, 0) (316, 316, 316, 316)\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:01] snes initialize zero matrices (iter 1) finished in 0.000608 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:01] cpu 0: (ijk)=(0, 2, 0) (316, 2378, 316, 2378)\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:01] cpu 0: (ijk)=(1, 0, 0) (200, 316, 200, 316)\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:01] cpu 0: (ijk)=(1, 1, 0) (200, 200, 200, 200)\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:01] cpu 0: (ijk)=(1, 1, 1) (200, 200, 200, 200)\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:01] cpu 0: (ijk)=(1, 2, 0) (200, 2378, 200, 2378)\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:01] cpu 0: (ijk)=(2, 0, 0) (2378, 316, 2378, 316)\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:01] cpu 0: (ijk)=(2, 1, 0) (2378, 200, 2378, 200)\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:01] cpu 0: (ijk)=(2, 2, 0) (2378, 2378, 2378, 2378)\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:01] cpu 0: (ijk)=(2, 2, 1) (2378, 2378, 2378, 2378)\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "Jpetsc_nest assembled, size = (2894, 2894)\n" + ] + } + ], + "source": [ + "\n", + "pc, sc, cc, rc = make_model()\n", + "\n", + "# =============================================================================================\n", + "# Create/load in mesh\n", + "# =============================================================================================\n", + "# Base mesh\n", + "domain, facet_markers, cell_markers = common.DemoSpheresMesh(0.5,0.25)\n", + "# Write mesh and meshfunctions to file\n", + "os.makedirs(\"mesh\", exist_ok=True)\n", + "common.write_mesh(domain, facet_markers, cell_markers, filename=\"mesh/DemoSpheresMesh\")\n", + "\n", + "# # Define solvers\n", + "parent_mesh = mesh.ParentMesh(\n", + " mesh_filename=\"mesh/DemoSpheresMesh.h5\",\n", + " mesh_filetype=\"hdf5\",\n", + " name=\"parent_mesh\",\n", + ")\n", + "configCur = config.Config()\n", + "model = model.Model(pc, sc, cc, rc, configCur, parent_mesh)\n", + "configCur.solver.update(\n", + " {\n", + " \"final_t\": 1,\n", + " \"initial_dt\": 0.01,\n", + " \"time_precision\": 6,\n", + " \"use_snes\": True,\n", + " \"print_assembly\": False,\n", + " }\n", + ")\n", + "\n", + "model.initialize(initialize_solver=False)\n", + "model.initialize_discrete_variational_problem_and_solver()" + ] + }, + { + "cell_type": "code", + "execution_count": 9, + "id": "b54d28ca", + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-12 time=17:55:01] Beginning time-step 1 [time=0.010000, dt=0.010000]\u001b[0m \u001b[36m....................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:01] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 277.00547618870814\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:01] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:01] snes residual assemble (iter 1) finished in 0.025326 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:01] snes jacobian assemble (iter 1) finished in 0.040597 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:01] snes residual assemble (iter 2) finished in 0.023625 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:01] snes jacobian assemble (iter 2) finished in 0.033300 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:01] snes residual assemble (iter 3) finished in 0.021660 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:01] snes jacobian assemble (iter 3) finished in 0.035758 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:01] snes residual assemble (iter 4) finished in 0.021770 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-12 time=17:55:01] Completed time-step 1 [time=0.010000, dt=0.010000]\u001b[0m \u001b[36m....................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:01] snes initialize zero matrices finished in 0.000608 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:01] snes jacobian assemble finished in 0.109657 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:01] snes residual assemble finished in 0.092383 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:01] snes total assemble finished in 0.202648 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:01] snes total solve finished in 0.124041 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:01] snes all finished in 0.326690 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:01] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:01] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:01] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:01] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:01] KSP residual norm: 2.2439790546670933e-12\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:01] Total time step finished in 0.334905 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-12 time=17:55:01] Beginning time-step 2 [time=0.020000, dt=0.010000]\u001b[0m \u001b[36m....................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:01] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 346.0152375120174\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:01] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:02] snes residual assemble (iter 1) finished in 0.024471 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:02] snes jacobian assemble (iter 1) finished in 0.033114 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:02] snes residual assemble (iter 2) finished in 0.021705 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:02] snes jacobian assemble (iter 2) finished in 0.039641 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:02] snes residual assemble (iter 3) finished in 0.026168 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:02] snes jacobian assemble (iter 3) finished in 0.038944 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:02] snes residual assemble (iter 4) finished in 0.022216 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-12 time=17:55:02] Completed time-step 2 [time=0.020000, dt=0.010000]\u001b[0m \u001b[36m....................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:02] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:02] snes jacobian assemble finished in 0.111700 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:02] snes residual assemble finished in 0.094561 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:02] snes total assemble finished in 0.206261 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:02] snes total solve finished in 0.109322 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:02] snes all finished in 0.315583 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:02] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:02] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:02] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:02] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:02] KSP residual norm: 1.922008105050548e-12\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:02] Total time step finished in 0.321060 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-12 time=17:55:02] Beginning time-step 3 [time=0.030000, dt=0.010000]\u001b[0m \u001b[36m....................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:02] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 444.4327394666516\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:02] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:02] snes residual assemble (iter 1) finished in 0.024653 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:02] snes jacobian assemble (iter 1) finished in 0.033659 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:02] snes residual assemble (iter 2) finished in 0.022861 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:02] snes jacobian assemble (iter 2) finished in 0.037325 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:02] snes residual assemble (iter 3) finished in 0.021609 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:02] snes jacobian assemble (iter 3) finished in 0.033858 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:02] snes residual assemble (iter 4) finished in 0.022950 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-12 time=17:55:02] Completed time-step 3 [time=0.030000, dt=0.010000]\u001b[0m \u001b[36m....................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:02] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:02] snes jacobian assemble finished in 0.104843 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:02] snes residual assemble finished in 0.092074 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:02] snes total assemble finished in 0.196918 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:02] snes total solve finished in 0.101214 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:02] snes all finished in 0.298132 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:02] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:02] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:02] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:02] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:02] KSP residual norm: 1.4267494135902915e-12\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:02] Total time step finished in 0.300922 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-12 time=17:55:02] Beginning time-step 4 [time=0.040000, dt=0.010000]\u001b[0m \u001b[36m....................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:02] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 591.6883551575438\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:02] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:02] snes residual assemble (iter 1) finished in 0.023885 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:02] snes jacobian assemble (iter 1) finished in 0.038568 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:02] snes residual assemble (iter 2) finished in 0.020886 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:02] snes jacobian assemble (iter 2) finished in 0.033834 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:02] snes residual assemble (iter 3) finished in 0.021651 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:02] snes jacobian assemble (iter 3) finished in 0.037731 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:02] snes residual assemble (iter 4) finished in 0.021158 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-12 time=17:55:02] Completed time-step 4 [time=0.040000, dt=0.010000]\u001b[0m \u001b[36m....................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:02] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:02] snes jacobian assemble finished in 0.110135 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:02] snes residual assemble finished in 0.087581 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:02] snes total assemble finished in 0.197716 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:02] snes total solve finished in 0.102600 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:02] snes all finished in 0.300317 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:02] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:02] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:02] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:02] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:02] KSP residual norm: 3.3678663345739497e-12\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:02] Total time step finished in 0.303874 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-12 time=17:55:02] Beginning time-step 5 [time=0.050000, dt=0.010000]\u001b[0m \u001b[36m....................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:02] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 826.3710301360334\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:02] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:02] snes residual assemble (iter 1) finished in 0.021179 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:02] snes jacobian assemble (iter 1) finished in 0.033395 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:03] snes residual assemble (iter 2) finished in 0.021747 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:03] snes jacobian assemble (iter 2) finished in 0.034969 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:03] snes residual assemble (iter 3) finished in 0.024313 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:03] snes jacobian assemble (iter 3) finished in 0.035461 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:03] snes residual assemble (iter 4) finished in 0.021304 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-12 time=17:55:03] Completed time-step 5 [time=0.050000, dt=0.010000]\u001b[0m \u001b[36m....................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:03] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:03] snes jacobian assemble finished in 0.103826 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:03] snes residual assemble finished in 0.088544 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:03] snes total assemble finished in 0.192370 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:03] snes total solve finished in 0.098060 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:03] snes all finished in 0.290431 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:03] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:03] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:03] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:03] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:03] KSP residual norm: 7.065294941883e-12\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:03] Total time step finished in 0.292986 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-12 time=17:55:03] Beginning time-step 6 [time=0.060000, dt=0.010000]\u001b[0m \u001b[36m....................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:03] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 1234.3171027799826\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:03] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:03] snes residual assemble (iter 1) finished in 0.021967 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:03] snes jacobian assemble (iter 1) finished in 0.032979 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:03] snes residual assemble (iter 2) finished in 0.021000 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:03] snes jacobian assemble (iter 2) finished in 0.037458 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:03] snes residual assemble (iter 3) finished in 0.023210 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:03] snes jacobian assemble (iter 3) finished in 0.034851 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:03] snes residual assemble (iter 4) finished in 0.020973 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-12 time=17:55:03] Completed time-step 6 [time=0.060000, dt=0.010000]\u001b[0m \u001b[36m....................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:03] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:03] snes jacobian assemble finished in 0.105288 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:03] snes residual assemble finished in 0.087151 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:03] snes total assemble finished in 0.192440 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:03] snes total solve finished in 0.095814 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:03] snes all finished in 0.288254 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:03] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:03] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:03] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:03] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:03] KSP residual norm: 1.4070791420919956e-11\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:03] Total time step finished in 0.290870 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-12 time=17:55:03] Beginning time-step 7 [time=0.070000, dt=0.010000]\u001b[0m \u001b[36m....................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:03] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 2039.684143393265\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:03] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:03] snes residual assemble (iter 1) finished in 0.020893 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:03] snes jacobian assemble (iter 1) finished in 0.033055 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:03] snes residual assemble (iter 2) finished in 0.021392 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:03] snes jacobian assemble (iter 2) finished in 0.037386 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:03] snes residual assemble (iter 3) finished in 0.021406 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:03] snes jacobian assemble (iter 3) finished in 0.032912 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:03] snes residual assemble (iter 4) finished in 0.021264 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-12 time=17:55:03] Completed time-step 7 [time=0.070000, dt=0.010000]\u001b[0m \u001b[36m....................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:03] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:03] snes jacobian assemble finished in 0.103353 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:03] snes residual assemble finished in 0.084956 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:03] snes total assemble finished in 0.188310 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:03] snes total solve finished in 0.095587 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:03] snes all finished in 0.283898 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:03] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:03] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:03] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:03] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:03] KSP residual norm: 3.811923760157594e-11\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:03] Total time step finished in 0.286646 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-12 time=17:55:03] Beginning time-step 8 [time=0.080000, dt=0.010000]\u001b[0m \u001b[36m....................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:03] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 3991.49928561186\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:03] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:03] snes residual assemble (iter 1) finished in 0.022938 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:03] snes jacobian assemble (iter 1) finished in 0.035440 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:03] snes residual assemble (iter 2) finished in 0.021453 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:03] snes jacobian assemble (iter 2) finished in 0.034679 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:04] snes residual assemble (iter 3) finished in 0.020960 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:04] snes jacobian assemble (iter 3) finished in 0.032332 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:04] snes residual assemble (iter 4) finished in 0.020557 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-12 time=17:55:04] Completed time-step 8 [time=0.080000, dt=0.010000]\u001b[0m \u001b[36m....................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:04] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:04] snes jacobian assemble finished in 0.102452 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:04] snes residual assemble finished in 0.085910 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:04] snes total assemble finished in 0.188362 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:04] snes total solve finished in 0.102990 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:04] snes all finished in 0.291353 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:04] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:04] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:04] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:04] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:04] KSP residual norm: 8.494311472392855e-11\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:04] Total time step finished in 0.294136 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-12 time=17:55:04] Beginning time-step 9 [time=0.090000, dt=0.010000]\u001b[0m \u001b[36m....................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:04] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 10933.44729369711\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:04] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:04] snes residual assemble (iter 1) finished in 0.021624 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:04] snes jacobian assemble (iter 1) finished in 0.035865 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:04] snes residual assemble (iter 2) finished in 0.022105 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:04] snes jacobian assemble (iter 2) finished in 0.036747 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:04] snes residual assemble (iter 3) finished in 0.024693 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:04] snes jacobian assemble (iter 3) finished in 0.036636 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:04] snes residual assemble (iter 4) finished in 0.026479 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-12 time=17:55:04] Completed time-step 9 [time=0.090000, dt=0.010000]\u001b[0m \u001b[36m....................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:04] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:04] snes jacobian assemble finished in 0.109248 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:04] snes residual assemble finished in 0.094901 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:04] snes total assemble finished in 0.204150 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:04] snes total solve finished in 0.108028 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:04] snes all finished in 0.312178 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:04] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:04] Linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:04] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:04] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:04] KSP residual norm: 3.6036884973554784e-12\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:04] Total time step finished in 0.316519 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:04] Beginning time-step 10 [time=0.100000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:04] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 55357.43588970452\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:04] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:04] snes residual assemble (iter 1) finished in 0.025023 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:04] snes jacobian assemble (iter 1) finished in 0.032947 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:04] snes residual assemble (iter 2) finished in 0.021387 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:04] snes jacobian assemble (iter 2) finished in 0.035485 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:04] snes residual assemble (iter 3) finished in 0.022386 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:04] snes jacobian assemble (iter 3) finished in 0.035622 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:04] snes residual assemble (iter 4) finished in 0.021308 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:04] snes jacobian assemble (iter 4) finished in 0.033258 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:04] snes residual assemble (iter 5) finished in 0.021220 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:04] Completed time-step 10 [time=0.100000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:04] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:04] snes jacobian assemble finished in 0.137313 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:04] snes residual assemble finished in 0.111327 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:04] snes total assemble finished in 0.248640 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:04] snes total solve finished in 0.139393 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:04] snes all finished in 0.388034 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:04] Non-linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:04] Linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:04] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:04] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:04] KSP residual norm: 3.236406952139477e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:04] Total time step finished in 0.389784 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:04] Beginning time-step 11 [time=0.110000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:04] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 55357.43588970452\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:04] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:04] snes residual assemble (iter 1) finished in 0.021410 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:04] snes jacobian assemble (iter 1) finished in 0.035620 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:04] snes residual assemble (iter 2) finished in 0.023397 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:05] snes jacobian assemble (iter 2) finished in 0.036076 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:05] snes residual assemble (iter 3) finished in 0.021242 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:05] snes jacobian assemble (iter 3) finished in 0.033632 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:05] snes residual assemble (iter 4) finished in 0.021552 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:05] snes jacobian assemble (iter 4) finished in 0.040704 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:05] snes residual assemble (iter 5) finished in 0.023957 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:05] Completed time-step 11 [time=0.110000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:05] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:05] snes jacobian assemble finished in 0.146034 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:05] snes residual assemble finished in 0.111560 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:05] snes total assemble finished in 0.257595 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:05] snes total solve finished in 0.150173 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:05] snes all finished in 0.407768 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:05] Non-linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:05] Linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:05] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:05] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:05] KSP residual norm: 1.8117957552790384e-12\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:05] Total time step finished in 0.409542 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:05] Beginning time-step 12 [time=0.120000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:05] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 10933.44729369711\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:05] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:05] snes residual assemble (iter 1) finished in 0.022605 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:05] snes jacobian assemble (iter 1) finished in 0.034505 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:05] snes residual assemble (iter 2) finished in 0.021335 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:05] snes jacobian assemble (iter 2) finished in 0.034648 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:05] snes residual assemble (iter 3) finished in 0.024137 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:05] snes jacobian assemble (iter 3) finished in 0.033688 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:05] snes residual assemble (iter 4) finished in 0.021819 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:05] Completed time-step 12 [time=0.120000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:05] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:05] snes jacobian assemble finished in 0.102843 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:05] snes residual assemble finished in 0.089898 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:05] snes total assemble finished in 0.192741 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:05] snes total solve finished in 0.113111 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:05] snes all finished in 0.305852 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:05] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:05] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:05] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:05] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:05] KSP residual norm: 1.026030703196971e-09\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:05] Total time step finished in 0.307608 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:05] Beginning time-step 13 [time=0.130000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:05] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 3991.4992856118715\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:05] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:05] snes residual assemble (iter 1) finished in 0.021138 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:05] snes jacobian assemble (iter 1) finished in 0.032557 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:05] snes residual assemble (iter 2) finished in 0.021526 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:05] snes jacobian assemble (iter 2) finished in 0.040004 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:05] snes residual assemble (iter 3) finished in 0.023452 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:05] snes jacobian assemble (iter 3) finished in 0.033544 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:05] snes residual assemble (iter 4) finished in 0.020935 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:05] Completed time-step 13 [time=0.130000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:05] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:05] snes jacobian assemble finished in 0.106105 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:05] snes residual assemble finished in 0.087053 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:05] snes total assemble finished in 0.193159 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:05] snes total solve finished in 0.113497 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:05] snes all finished in 0.306656 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:05] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:05] Linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:05] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:05] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:05] KSP residual norm: 3.169854986316712e-11\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:05] Total time step finished in 0.308908 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:05] Beginning time-step 14 [time=0.140000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:05] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 2039.684143393265\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:05] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:05] snes residual assemble (iter 1) finished in 0.021156 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:05] snes jacobian assemble (iter 1) finished in 0.032706 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:06] snes residual assemble (iter 2) finished in 0.021991 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:06] snes jacobian assemble (iter 2) finished in 0.037451 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:06] snes residual assemble (iter 3) finished in 0.021294 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:06] snes jacobian assemble (iter 3) finished in 0.033638 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:06] snes residual assemble (iter 4) finished in 0.026305 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:06] Completed time-step 14 [time=0.140000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:06] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:06] snes jacobian assemble finished in 0.103795 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:06] snes residual assemble finished in 0.090747 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:06] snes total assemble finished in 0.194542 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:06] snes total solve finished in 0.110748 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:06] snes all finished in 0.305291 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:06] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:06] Linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:06] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:06] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:06] KSP residual norm: 8.118680344281997e-12\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:06] Total time step finished in 0.307882 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:06] Beginning time-step 15 [time=0.150000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:06] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 1234.3171027799713\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:06] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:06] snes residual assemble (iter 1) finished in 0.023056 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:06] snes jacobian assemble (iter 1) finished in 0.034603 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:06] snes residual assemble (iter 2) finished in 0.022285 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:06] snes jacobian assemble (iter 2) finished in 0.034132 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:06] snes residual assemble (iter 3) finished in 0.022681 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:06] snes jacobian assemble (iter 3) finished in 0.033128 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:06] snes residual assemble (iter 4) finished in 0.025056 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:06] Completed time-step 15 [time=0.150000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:06] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:06] snes jacobian assemble finished in 0.101865 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:06] snes residual assemble finished in 0.093079 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:06] snes total assemble finished in 0.194944 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:06] snes total solve finished in 0.115571 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:06] snes all finished in 0.310516 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:06] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:06] Linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:06] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:06] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:06] KSP residual norm: 3.5486212151848612e-12\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:06] Total time step finished in 0.312597 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:06] Beginning time-step 16 [time=0.160000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:06] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 826.3710301360334\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:06] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:06] snes residual assemble (iter 1) finished in 0.031727 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:06] snes jacobian assemble (iter 1) finished in 0.037773 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:06] snes residual assemble (iter 2) finished in 0.023083 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:06] snes jacobian assemble (iter 2) finished in 0.034563 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:06] snes residual assemble (iter 3) finished in 0.023079 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:06] snes jacobian assemble (iter 3) finished in 0.037053 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:06] snes residual assemble (iter 4) finished in 0.021054 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:06] Completed time-step 16 [time=0.160000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:06] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:06] snes jacobian assemble finished in 0.109391 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:06] snes residual assemble finished in 0.098944 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:06] snes total assemble finished in 0.208336 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:06] snes total solve finished in 0.118297 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:06] snes all finished in 0.326633 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:06] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:06] Linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:06] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:06] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:06] KSP residual norm: 1.3173872510968e-12\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:06] Total time step finished in 0.329507 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:06] Beginning time-step 17 [time=0.170000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:06] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 591.6883551575438\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:06] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:06] snes residual assemble (iter 1) finished in 0.021471 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:06] snes jacobian assemble (iter 1) finished in 0.033267 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:07] snes residual assemble (iter 2) finished in 0.022477 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:07] snes jacobian assemble (iter 2) finished in 0.037696 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:07] snes residual assemble (iter 3) finished in 0.021711 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:07] snes jacobian assemble (iter 3) finished in 0.033663 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:07] snes residual assemble (iter 4) finished in 0.021216 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:07] Completed time-step 17 [time=0.170000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:07] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:07] snes jacobian assemble finished in 0.104627 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:07] snes residual assemble finished in 0.086877 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:07] snes total assemble finished in 0.191504 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:07] snes total solve finished in 0.119056 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:07] snes all finished in 0.310560 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:07] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:07] Linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:07] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:07] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:07] KSP residual norm: 2.547215000643235e-12\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:07] Total time step finished in 0.312217 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:07] Beginning time-step 18 [time=0.180000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:07] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 444.4327394666516\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:07] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:07] snes residual assemble (iter 1) finished in 0.022349 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:07] snes jacobian assemble (iter 1) finished in 0.038996 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:07] snes residual assemble (iter 2) finished in 0.021260 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:07] snes jacobian assemble (iter 2) finished in 0.034912 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:07] snes residual assemble (iter 3) finished in 0.021057 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:07] snes jacobian assemble (iter 3) finished in 0.033671 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:07] snes residual assemble (iter 4) finished in 0.023117 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:07] Completed time-step 18 [time=0.180000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:07] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:07] snes jacobian assemble finished in 0.107580 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:07] snes residual assemble finished in 0.087785 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:07] snes total assemble finished in 0.195366 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:07] snes total solve finished in 0.108566 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:07] snes all finished in 0.303932 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:07] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:07] Linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:07] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:07] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:07] KSP residual norm: 1.9709804199659864e-12\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:07] Total time step finished in 0.305559 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:07] Beginning time-step 19 [time=0.190000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:07] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 346.0152375120174\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:07] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:07] snes residual assemble (iter 1) finished in 0.021653 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:07] snes jacobian assemble (iter 1) finished in 0.032801 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:07] snes residual assemble (iter 2) finished in 0.020706 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:07] snes jacobian assemble (iter 2) finished in 0.034221 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:07] snes residual assemble (iter 3) finished in 0.022305 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:07] snes jacobian assemble (iter 3) finished in 0.036123 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:07] snes residual assemble (iter 4) finished in 0.020967 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:07] Completed time-step 19 [time=0.190000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:07] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:07] snes jacobian assemble finished in 0.103145 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:07] snes residual assemble finished in 0.085633 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:07] snes total assemble finished in 0.188779 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:07] snes total solve finished in 0.106144 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:07] snes all finished in 0.294923 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:07] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:07] Linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:07] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:07] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:07] KSP residual norm: 1.094182699392151e-12\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:07] Total time step finished in 0.296735 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:07] Beginning time-step 20 [time=0.200000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:07] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 277.00547618870814\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:07] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:07] snes residual assemble (iter 1) finished in 0.020612 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:07] snes jacobian assemble (iter 1) finished in 0.032974 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:07] snes residual assemble (iter 2) finished in 0.020718 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:07] snes jacobian assemble (iter 2) finished in 0.036800 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:08] snes residual assemble (iter 3) finished in 0.024570 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:08] snes jacobian assemble (iter 3) finished in 0.036434 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:08] snes residual assemble (iter 4) finished in 0.021454 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:08] Completed time-step 20 [time=0.200000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:08] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:08] snes jacobian assemble finished in 0.106209 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:08] snes residual assemble finished in 0.087354 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:08] snes total assemble finished in 0.193564 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:08] snes total solve finished in 0.107599 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:08] snes all finished in 0.301163 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:08] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:08] Linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:08] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:08] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:08] KSP residual norm: 2.175151575389005e-12\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:08] Total time step finished in 0.302752 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:08] Beginning time-step 21 [time=0.210000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:08] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 226.75581501829356\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:08] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:08] snes residual assemble (iter 1) finished in 0.021221 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:08] snes jacobian assemble (iter 1) finished in 0.033673 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:08] snes residual assemble (iter 2) finished in 0.024711 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:08] snes jacobian assemble (iter 2) finished in 0.037497 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:08] snes residual assemble (iter 3) finished in 0.021967 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:08] snes jacobian assemble (iter 3) finished in 0.038614 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:08] snes residual assemble (iter 4) finished in 0.024298 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:08] Completed time-step 21 [time=0.210000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:08] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:08] snes jacobian assemble finished in 0.109784 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:08] snes residual assemble finished in 0.092199 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:08] snes total assemble finished in 0.201984 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:08] snes total solve finished in 0.114520 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:08] snes all finished in 0.316504 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:08] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:08] Linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:08] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:08] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:08] KSP residual norm: 1.1702898903354808e-12\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:08] Total time step finished in 0.319230 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:08] Beginning time-step 22 [time=0.220000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:08] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 189.03501614942115\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:08] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:08] snes residual assemble (iter 1) finished in 0.025273 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:08] snes jacobian assemble (iter 1) finished in 0.037091 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:08] snes residual assemble (iter 2) finished in 0.020763 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:08] snes jacobian assemble (iter 2) finished in 0.034811 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:08] snes residual assemble (iter 3) finished in 0.022204 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:08] snes jacobian assemble (iter 3) finished in 0.045827 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:08] snes residual assemble (iter 4) finished in 0.022653 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:08] Completed time-step 22 [time=0.220000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:08] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:08] snes jacobian assemble finished in 0.117730 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:08] snes residual assemble finished in 0.090894 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:08] snes total assemble finished in 0.208624 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:08] snes total solve finished in 0.113482 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:08] snes all finished in 0.322106 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:08] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:08] Linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:08] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:08] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:08] KSP residual norm: 7.546262538844441e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:08] Total time step finished in 0.325342 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:08] Beginning time-step 23 [time=0.230000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:08] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 159.999453870023\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:08] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:08] snes residual assemble (iter 1) finished in 0.024610 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:08] snes jacobian assemble (iter 1) finished in 0.039933 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:08] snes residual assemble (iter 2) finished in 0.023843 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:08] snes jacobian assemble (iter 2) finished in 0.042456 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:09] snes residual assemble (iter 3) finished in 0.021908 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:09] snes jacobian assemble (iter 3) finished in 0.033891 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:09] snes residual assemble (iter 4) finished in 0.021492 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:09] Completed time-step 23 [time=0.230000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:09] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:09] snes jacobian assemble finished in 0.116281 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:09] snes residual assemble finished in 0.091854 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:09] snes total assemble finished in 0.208136 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:09] snes total solve finished in 0.110402 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:09] snes all finished in 0.318539 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:09] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:09] Linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:09] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:09] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:09] KSP residual norm: 4.74922532330455e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:09] Total time step finished in 0.321189 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:09] Beginning time-step 24 [time=0.240000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:09] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 137.17386709321318\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:09] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:09] snes residual assemble (iter 1) finished in 0.023480 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:09] snes jacobian assemble (iter 1) finished in 0.036115 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:09] snes residual assemble (iter 2) finished in 0.025540 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:09] snes jacobian assemble (iter 2) finished in 0.033967 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:09] snes residual assemble (iter 3) finished in 0.020881 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:09] snes jacobian assemble (iter 3) finished in 0.033822 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:09] snes residual assemble (iter 4) finished in 0.024943 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:09] Completed time-step 24 [time=0.240000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:09] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:09] snes jacobian assemble finished in 0.103905 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:09] snes residual assemble finished in 0.094845 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:09] snes total assemble finished in 0.198750 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:09] snes total solve finished in 0.106060 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:09] snes all finished in 0.304810 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:09] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:09] Linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:09] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:09] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:09] KSP residual norm: 2.681042336343011e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:09] Total time step finished in 0.307341 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:09] Beginning time-step 25 [time=0.250000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:09] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 118.90584005383289\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:09] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:09] snes residual assemble (iter 1) finished in 0.022801 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:09] snes jacobian assemble (iter 1) finished in 0.033038 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:09] snes residual assemble (iter 2) finished in 0.020806 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:09] snes jacobian assemble (iter 2) finished in 0.035272 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:09] snes residual assemble (iter 3) finished in 0.023818 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:09] snes jacobian assemble (iter 3) finished in 0.036723 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:09] snes residual assemble (iter 4) finished in 0.022794 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:09] Completed time-step 25 [time=0.250000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:09] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:09] snes jacobian assemble finished in 0.105034 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:09] snes residual assemble finished in 0.090221 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:09] snes total assemble finished in 0.195255 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:09] snes total solve finished in 0.106432 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:09] snes all finished in 0.301688 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:09] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:09] Linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:09] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:09] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:09] KSP residual norm: 1.403521684774107e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:09] Total time step finished in 0.304225 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:09] Beginning time-step 26 [time=0.260000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:09] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 104.05812239894203\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:09] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:09] snes residual assemble (iter 1) finished in 0.022723 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:09] snes jacobian assemble (iter 1) finished in 0.033736 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:09] snes residual assemble (iter 2) finished in 0.024721 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:09] snes jacobian assemble (iter 2) finished in 0.038788 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:09] snes residual assemble (iter 3) finished in 0.021789 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:10] snes jacobian assemble (iter 3) finished in 0.033039 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:10] snes residual assemble (iter 4) finished in 0.020918 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:10] Completed time-step 26 [time=0.260000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:10] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:10] snes jacobian assemble finished in 0.105564 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:10] snes residual assemble finished in 0.090152 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:10] snes total assemble finished in 0.195717 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:10] snes total solve finished in 0.107323 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:10] snes all finished in 0.303040 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:10] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:10] Linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:10] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:10] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:10] KSP residual norm: 7.297600848292037e-14\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:10] Total time step finished in 0.305358 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:10] Beginning time-step 27 [time=0.270000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:10] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 91.82726131316485\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:10] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:10] snes residual assemble (iter 1) finished in 0.021796 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:10] snes jacobian assemble (iter 1) finished in 0.036471 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:10] snes residual assemble (iter 2) finished in 0.021743 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:10] snes jacobian assemble (iter 2) finished in 0.036301 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:10] snes residual assemble (iter 3) finished in 0.020804 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:10] snes jacobian assemble (iter 3) finished in 0.033339 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:10] snes residual assemble (iter 4) finished in 0.021089 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:10] Completed time-step 27 [time=0.270000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:10] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:10] snes jacobian assemble finished in 0.106113 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:10] snes residual assemble finished in 0.085433 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:10] snes total assemble finished in 0.191546 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:10] snes total solve finished in 0.108152 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:10] snes all finished in 0.299699 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:10] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:10] Linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:10] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:10] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:10] KSP residual norm: 9.06205228945637e-14\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:10] Total time step finished in 0.302294 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:10] Beginning time-step 28 [time=0.280000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:10] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 81.63258052919673\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:10] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:10] snes residual assemble (iter 1) finished in 0.023467 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:10] snes jacobian assemble (iter 1) finished in 0.035351 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:10] snes residual assemble (iter 2) finished in 0.021793 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:10] snes jacobian assemble (iter 2) finished in 0.033396 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:10] snes residual assemble (iter 3) finished in 0.020977 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:10] snes jacobian assemble (iter 3) finished in 0.035388 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:10] snes residual assemble (iter 4) finished in 0.021435 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:10] Completed time-step 28 [time=0.280000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:10] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:10] snes jacobian assemble finished in 0.104136 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:10] snes residual assemble finished in 0.087673 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:10] snes total assemble finished in 0.191809 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:10] snes total solve finished in 0.110256 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:10] snes all finished in 0.302066 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:10] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:10] Linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:10] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:10] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:10] KSP residual norm: 1.2568350180349676e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:10] Total time step finished in 0.304462 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:10] Beginning time-step 29 [time=0.290000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:10] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 73.04596702495019\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:10] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:10] snes residual assemble (iter 1) finished in 0.021041 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:10] snes jacobian assemble (iter 1) finished in 0.032785 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:10] snes residual assemble (iter 2) finished in 0.020908 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:10] snes jacobian assemble (iter 2) finished in 0.035211 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:10] snes residual assemble (iter 3) finished in 0.024831 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:10] snes jacobian assemble (iter 3) finished in 0.041292 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] snes residual assemble (iter 4) finished in 0.023071 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:11] Completed time-step 29 [time=0.290000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] snes jacobian assemble finished in 0.109289 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] snes residual assemble finished in 0.089853 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] snes total assemble finished in 0.199142 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] snes total solve finished in 0.108601 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] snes all finished in 0.307744 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:11] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:11] Linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:11] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:11] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:11] KSP residual norm: 1.501036606716265e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] Total time step finished in 0.310373 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:11] Beginning time-step 30 [time=0.300000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:11] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 65.74618170009217\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:11] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] snes residual assemble (iter 1) finished in 0.025511 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] snes jacobian assemble (iter 1) finished in 0.033338 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] snes residual assemble (iter 2) finished in 0.024108 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] snes jacobian assemble (iter 2) finished in 0.041101 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] snes residual assemble (iter 3) finished in 0.022744 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] snes jacobian assemble (iter 3) finished in 0.034094 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] snes residual assemble (iter 4) finished in 0.021849 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:11] Completed time-step 30 [time=0.300000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] snes jacobian assemble finished in 0.108534 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] snes residual assemble finished in 0.094214 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] snes total assemble finished in 0.202749 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] snes total solve finished in 0.110079 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] snes all finished in 0.312828 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:11] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:11] Linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:11] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:11] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:11] KSP residual norm: 1.8421529674280393e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] Total time step finished in 0.315910 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:11] Beginning time-step 31 [time=0.310000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:11] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 59.488371692509645\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:11] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] snes residual assemble (iter 1) finished in 0.021800 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] snes jacobian assemble (iter 1) finished in 0.035981 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] snes residual assemble (iter 2) finished in 0.021648 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] snes jacobian assemble (iter 2) finished in 0.039513 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] snes residual assemble (iter 3) finished in 0.020777 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] snes jacobian assemble (iter 3) finished in 0.033648 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] snes residual assemble (iter 4) finished in 0.020831 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:11] Completed time-step 31 [time=0.310000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] snes jacobian assemble finished in 0.109143 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] snes residual assemble finished in 0.085058 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] snes total assemble finished in 0.194202 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] snes total solve finished in 0.104602 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] snes all finished in 0.298804 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:11] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:11] Linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:11] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:11] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:11] KSP residual norm: 2.114688971095497e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] Total time step finished in 0.301254 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:11] Beginning time-step 32 [time=0.320000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:11] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 54.083267171449734\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:11] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] snes residual assemble (iter 1) finished in 0.021422 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] snes jacobian assemble (iter 1) finished in 0.034190 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] snes residual assemble (iter 2) finished in 0.025513 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] snes jacobian assemble (iter 2) finished in 0.037288 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] snes residual assemble (iter 3) finished in 0.021126 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] snes jacobian assemble (iter 3) finished in 0.033663 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] snes residual assemble (iter 4) finished in 0.021785 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:11] Completed time-step 32 [time=0.320000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] snes jacobian assemble finished in 0.105143 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] snes residual assemble finished in 0.089848 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] snes total assemble finished in 0.194991 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] snes total solve finished in 0.101632 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] snes all finished in 0.296623 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:11] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:11] Linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:11] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:11] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:11] KSP residual norm: 8.755522456978226e-14\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:11] Total time step finished in 0.299228 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:11] Beginning time-step 33 [time=0.330000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:11] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 49.38269999241811\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:11] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:12] snes residual assemble (iter 1) finished in 0.024536 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:12] snes jacobian assemble (iter 1) finished in 0.033348 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:12] snes residual assemble (iter 2) finished in 0.021580 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:12] snes jacobian assemble (iter 2) finished in 0.034693 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:12] snes residual assemble (iter 3) finished in 0.022016 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:12] snes jacobian assemble (iter 3) finished in 0.037152 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:12] snes residual assemble (iter 4) finished in 0.020868 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:12] Completed time-step 33 [time=0.330000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:12] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:12] snes jacobian assemble finished in 0.105194 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:12] snes residual assemble finished in 0.089001 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:12] snes total assemble finished in 0.194195 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:12] snes total solve finished in 0.108774 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:12] snes all finished in 0.302969 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:12] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:12] Linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:12] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:12] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:12] KSP residual norm: 1.143161367372329e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:12] Total time step finished in 0.307062 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:12] Beginning time-step 34 [time=0.340000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:12] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 45.26934027878724\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:12] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:12] snes residual assemble (iter 1) finished in 0.021366 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:12] snes jacobian assemble (iter 1) finished in 0.033002 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:12] snes residual assemble (iter 2) finished in 0.021471 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:12] snes jacobian assemble (iter 2) finished in 0.040087 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:12] snes residual assemble (iter 3) finished in 0.021381 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:12] snes jacobian assemble (iter 3) finished in 0.033257 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:12] snes residual assemble (iter 4) finished in 0.022140 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:12] Completed time-step 34 [time=0.340000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:12] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:12] snes jacobian assemble finished in 0.106347 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:12] snes residual assemble finished in 0.086359 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:12] snes total assemble finished in 0.192707 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:12] snes total solve finished in 0.099956 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:12] snes all finished in 0.292663 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:12] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:12] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:12] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:12] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:12] KSP residual norm: 2.3658206302248638e-12\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:12] Total time step finished in 0.294942 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:12] Beginning time-step 35 [time=0.350000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:12] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 41.64930315331503\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:12] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:12] snes residual assemble (iter 1) finished in 0.020969 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:12] snes jacobian assemble (iter 1) finished in 0.037512 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:12] snes residual assemble (iter 2) finished in 0.020880 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:12] snes jacobian assemble (iter 2) finished in 0.034656 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:12] snes residual assemble (iter 3) finished in 0.021125 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:12] snes jacobian assemble (iter 3) finished in 0.032730 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:12] snes residual assemble (iter 4) finished in 0.021053 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:12] Completed time-step 35 [time=0.350000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:12] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:12] snes jacobian assemble finished in 0.104898 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:12] snes residual assemble finished in 0.084028 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:12] snes total assemble finished in 0.188927 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:12] snes total solve finished in 0.107197 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:12] snes all finished in 0.296125 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:12] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:12] Linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:12] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:12] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:12] KSP residual norm: 2.197315256226874e-14\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:12] Total time step finished in 0.298338 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:12] Beginning time-step 36 [time=0.360000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:12] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 38.44674367217067\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:12] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:12] snes residual assemble (iter 1) finished in 0.021930 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:12] snes jacobian assemble (iter 1) finished in 0.037916 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:13] snes residual assemble (iter 2) finished in 0.025687 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:13] snes jacobian assemble (iter 2) finished in 0.044502 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:13] snes residual assemble (iter 3) finished in 0.026049 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:13] snes jacobian assemble (iter 3) finished in 0.042520 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:13] snes residual assemble (iter 4) finished in 0.024095 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:13] Completed time-step 36 [time=0.360000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:13] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:13] snes jacobian assemble finished in 0.124938 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:13] snes residual assemble finished in 0.097763 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:13] snes total assemble finished in 0.222702 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:13] snes total solve finished in 0.134901 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:13] snes all finished in 0.357603 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:13] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:13] Linear solver iterations: 4\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:13] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:13] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:13] KSP residual norm: 1.2129181408936172e-14\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:13] Total time step finished in 0.360025 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:13] Beginning time-step 37 [time=0.370000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:13] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 35.59985158490235\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:13] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:13] snes residual assemble (iter 1) finished in 0.022275 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:13] snes jacobian assemble (iter 1) finished in 0.033400 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:13] snes residual assemble (iter 2) finished in 0.023791 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:13] snes jacobian assemble (iter 2) finished in 0.039021 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:13] snes residual assemble (iter 3) finished in 0.021851 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:13] snes jacobian assemble (iter 3) finished in 0.032826 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:13] snes residual assemble (iter 4) finished in 0.022650 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:13] Completed time-step 37 [time=0.370000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:13] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:13] snes jacobian assemble finished in 0.105248 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:13] snes residual assemble finished in 0.090569 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:13] snes total assemble finished in 0.195818 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:13] snes total solve finished in 0.103403 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:13] snes all finished in 0.299222 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:13] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:13] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:13] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:13] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:13] KSP residual norm: 1.5094695948051523e-12\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:13] Total time step finished in 0.301553 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:13] Beginning time-step 38 [time=0.380000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:13] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 33.05784642283243\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:13] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:13] snes residual assemble (iter 1) finished in 0.023925 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:13] snes jacobian assemble (iter 1) finished in 0.036283 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:13] snes residual assemble (iter 2) finished in 0.025537 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:13] snes jacobian assemble (iter 2) finished in 0.045518 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:13] snes residual assemble (iter 3) finished in 0.022130 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:13] snes jacobian assemble (iter 3) finished in 0.036497 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:13] snes residual assemble (iter 4) finished in 0.022113 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:13] Completed time-step 38 [time=0.380000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:13] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:13] snes jacobian assemble finished in 0.118300 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:13] snes residual assemble finished in 0.093706 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:13] snes total assemble finished in 0.212006 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:13] snes total solve finished in 0.108655 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:13] snes all finished in 0.320662 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:13] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:13] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:13] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:13] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:13] KSP residual norm: 1.163352904510991e-12\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:13] Total time step finished in 0.323291 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:13] Beginning time-step 39 [time=0.390000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:13] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 30.77869725113942\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:13] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:13] snes residual assemble (iter 1) finished in 0.021035 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:13] snes jacobian assemble (iter 1) finished in 0.032716 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:14] snes residual assemble (iter 2) finished in 0.021452 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:14] snes jacobian assemble (iter 2) finished in 0.034243 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:14] snes residual assemble (iter 3) finished in 0.022442 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:14] snes jacobian assemble (iter 3) finished in 0.034622 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:14] snes residual assemble (iter 4) finished in 0.025058 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:14] Completed time-step 39 [time=0.390000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:14] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:14] snes jacobian assemble finished in 0.101582 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:14] snes residual assemble finished in 0.089988 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:14] snes total assemble finished in 0.191571 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:14] snes total solve finished in 0.100879 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:14] snes all finished in 0.292451 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:14] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:14] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:14] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:14] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:14] KSP residual norm: 7.031868677597494e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:14] Total time step finished in 0.295384 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:14] Beginning time-step 40 [time=0.400000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:14] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 28.72737402946086\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:14] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:14] snes residual assemble (iter 1) finished in 0.023891 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:14] snes jacobian assemble (iter 1) finished in 0.033662 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:14] snes residual assemble (iter 2) finished in 0.021226 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:14] snes jacobian assemble (iter 2) finished in 0.034771 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:14] snes residual assemble (iter 3) finished in 0.025390 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:14] snes jacobian assemble (iter 3) finished in 0.036071 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:14] snes residual assemble (iter 4) finished in 0.021339 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:14] Completed time-step 40 [time=0.400000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:14] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:14] snes jacobian assemble finished in 0.104505 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:14] snes residual assemble finished in 0.091847 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:14] snes total assemble finished in 0.196352 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:14] snes total solve finished in 0.102553 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:14] snes all finished in 0.298906 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:14] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:14] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:14] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:14] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:14] KSP residual norm: 5.371936996164767e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:14] Total time step finished in 0.301185 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:14] Beginning time-step 41 [time=0.410000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:14] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 26.874493515208542\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:14] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:14] snes residual assemble (iter 1) finished in 0.021696 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:14] snes jacobian assemble (iter 1) finished in 0.035119 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:14] snes residual assemble (iter 2) finished in 0.022453 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:14] snes jacobian assemble (iter 2) finished in 0.040252 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:14] snes residual assemble (iter 3) finished in 0.022234 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:14] snes jacobian assemble (iter 3) finished in 0.034874 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:14] snes residual assemble (iter 4) finished in 0.024524 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:14] Completed time-step 41 [time=0.410000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:14] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:14] snes jacobian assemble finished in 0.110247 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:14] snes residual assemble finished in 0.090909 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:14] snes total assemble finished in 0.201156 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:14] snes total solve finished in 0.107338 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:14] snes all finished in 0.308495 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:14] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:14] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:14] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:14] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:14] KSP residual norm: 5.220342832683167e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:14] Total time step finished in 0.310714 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:14] Beginning time-step 42 [time=0.420000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:14] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 25.195261157978166\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:14] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:14] snes residual assemble (iter 1) finished in 0.030121 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:14] snes jacobian assemble (iter 1) finished in 0.041659 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:14] snes residual assemble (iter 2) finished in 0.022911 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:15] snes jacobian assemble (iter 2) finished in 0.034892 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:15] snes residual assemble (iter 3) finished in 0.021714 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:15] snes jacobian assemble (iter 3) finished in 0.035174 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:15] snes residual assemble (iter 4) finished in 0.024215 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:15] Completed time-step 42 [time=0.420000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:15] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:15] snes jacobian assemble finished in 0.111726 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:15] snes residual assemble finished in 0.098963 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:15] snes total assemble finished in 0.210690 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:15] snes total solve finished in 0.106632 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:15] snes all finished in 0.317322 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:15] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:15] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:15] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:15] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:15] KSP residual norm: 4.798374306889719e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:15] Total time step finished in 0.320543 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:15] Beginning time-step 43 [time=0.430000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:15] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 23.66863728535691\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:15] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:15] snes residual assemble (iter 1) finished in 0.021759 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:15] snes jacobian assemble (iter 1) finished in 0.034235 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:15] snes residual assemble (iter 2) finished in 0.023192 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:15] snes jacobian assemble (iter 2) finished in 0.038768 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:15] snes residual assemble (iter 3) finished in 0.024244 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:15] snes jacobian assemble (iter 3) finished in 0.041923 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:15] snes residual assemble (iter 4) finished in 0.021220 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:15] Completed time-step 43 [time=0.430000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:15] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:15] snes jacobian assemble finished in 0.114928 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:15] snes residual assemble finished in 0.090418 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:15] snes total assemble finished in 0.205346 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:15] snes total solve finished in 0.114574 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:15] snes all finished in 0.319921 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:15] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:15] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:15] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:15] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:15] KSP residual norm: 4.27768315258838e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:15] Total time step finished in 0.322197 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:15] Beginning time-step 44 [time=0.440000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:15] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 22.276674845909383\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:15] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:15] snes residual assemble (iter 1) finished in 0.021503 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:15] snes jacobian assemble (iter 1) finished in 0.033496 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:15] snes residual assemble (iter 2) finished in 0.021303 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:15] snes jacobian assemble (iter 2) finished in 0.038950 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:15] snes residual assemble (iter 3) finished in 0.021153 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:15] snes jacobian assemble (iter 3) finished in 0.033574 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:15] snes residual assemble (iter 4) finished in 0.028442 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:15] Completed time-step 44 [time=0.440000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:15] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:15] snes jacobian assemble finished in 0.106020 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:15] snes residual assemble finished in 0.092402 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:15] snes total assemble finished in 0.198423 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:15] snes total solve finished in 0.113027 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:15] snes all finished in 0.311450 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:15] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:15] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:15] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:15] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:15] KSP residual norm: 3.832220803634853e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:15] Total time step finished in 0.313741 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:15] Beginning time-step 45 [time=0.450000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:15] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 21.00398952273963\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:15] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:15] snes residual assemble (iter 1) finished in 0.022812 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:15] snes jacobian assemble (iter 1) finished in 0.033686 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:15] snes residual assemble (iter 2) finished in 0.039329 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:16] snes jacobian assemble (iter 2) finished in 0.050998 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:16] snes residual assemble (iter 3) finished in 0.026360 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:16] snes jacobian assemble (iter 3) finished in 0.044033 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:16] snes residual assemble (iter 4) finished in 0.024962 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:16] Completed time-step 45 [time=0.450000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:16] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:16] snes jacobian assemble finished in 0.128718 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:16] snes residual assemble finished in 0.113464 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:16] snes total assemble finished in 0.242183 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:16] snes total solve finished in 0.127448 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:16] snes all finished in 0.369632 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:16] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:16] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:16] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:16] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:16] KSP residual norm: 3.4637930166905326e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:16] Total time step finished in 0.372166 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:16] Beginning time-step 46 [time=0.460000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:16] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 19.837332821475684\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:16] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:16] snes residual assemble (iter 1) finished in 0.040420 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:16] snes jacobian assemble (iter 1) finished in 0.041259 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:16] snes residual assemble (iter 2) finished in 0.029564 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:16] snes jacobian assemble (iter 2) finished in 0.036642 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:16] snes residual assemble (iter 3) finished in 0.024093 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:16] snes jacobian assemble (iter 3) finished in 0.033554 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:16] snes residual assemble (iter 4) finished in 0.022758 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:16] Completed time-step 46 [time=0.460000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:16] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:16] snes jacobian assemble finished in 0.111457 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:16] snes residual assemble finished in 0.116835 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:16] snes total assemble finished in 0.228292 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:16] snes total solve finished in 0.128658 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:16] snes all finished in 0.356951 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:16] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:16] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:16] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:16] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:16] KSP residual norm: 3.1204998712025015e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:16] Total time step finished in 0.363269 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:16] Beginning time-step 47 [time=0.470000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:16] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 18.765245881945702\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:16] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:16] snes residual assemble (iter 1) finished in 0.021235 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:16] snes jacobian assemble (iter 1) finished in 0.037122 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:16] snes residual assemble (iter 2) finished in 0.022538 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:16] snes jacobian assemble (iter 2) finished in 0.035491 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:16] snes residual assemble (iter 3) finished in 0.020923 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:16] snes jacobian assemble (iter 3) finished in 0.032815 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:16] snes residual assemble (iter 4) finished in 0.021583 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:16] Completed time-step 47 [time=0.470000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:16] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:16] snes jacobian assemble finished in 0.105429 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:16] snes residual assemble finished in 0.086282 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:16] snes total assemble finished in 0.191711 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:16] snes total solve finished in 0.101106 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:16] snes all finished in 0.292818 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:16] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:16] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:16] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:16] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:16] KSP residual norm: 2.7588413282705184e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:16] Total time step finished in 0.295143 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:16] Beginning time-step 48 [time=0.480000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:16] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 17.777777028618402\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:16] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:16] snes residual assemble (iter 1) finished in 0.023072 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:16] snes jacobian assemble (iter 1) finished in 0.036802 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:17] snes residual assemble (iter 2) finished in 0.021361 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:17] snes jacobian assemble (iter 2) finished in 0.034625 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:17] snes residual assemble (iter 3) finished in 0.021346 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:17] snes jacobian assemble (iter 3) finished in 0.034325 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:17] snes residual assemble (iter 4) finished in 0.025648 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:17] Completed time-step 48 [time=0.480000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:17] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:17] snes jacobian assemble finished in 0.105753 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:17] snes residual assemble finished in 0.091429 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:17] snes total assemble finished in 0.197182 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:17] snes total solve finished in 0.101198 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:17] snes all finished in 0.298381 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:17] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:17] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:17] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:17] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:17] KSP residual norm: 2.3809028886292734e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:17] Total time step finished in 0.300879 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:17] Beginning time-step 49 [time=0.490000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:17] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 16.866249992767735\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:17] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:17] snes residual assemble (iter 1) finished in 0.023440 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:17] snes jacobian assemble (iter 1) finished in 0.034782 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:17] snes residual assemble (iter 2) finished in 0.021794 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:17] snes jacobian assemble (iter 2) finished in 0.034849 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:17] snes residual assemble (iter 3) finished in 0.024571 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:17] snes jacobian assemble (iter 3) finished in 0.038117 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:17] snes residual assemble (iter 4) finished in 0.023765 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:17] Completed time-step 49 [time=0.490000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:17] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:17] snes jacobian assemble finished in 0.107749 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:17] snes residual assemble finished in 0.093572 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:17] snes total assemble finished in 0.201321 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:17] snes total solve finished in 0.104120 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:17] snes all finished in 0.305442 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:17] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:17] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:17] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:17] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:17] KSP residual norm: 2.0017725511752173e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:17] Total time step finished in 0.308017 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:17] Beginning time-step 50 [time=0.500000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:17] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 16.02307267694414\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:17] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:17] snes residual assemble (iter 1) finished in 0.025708 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:17] snes jacobian assemble (iter 1) finished in 0.041899 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:17] snes residual assemble (iter 2) finished in 0.025990 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:17] snes jacobian assemble (iter 2) finished in 0.035796 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:17] snes residual assemble (iter 3) finished in 0.021679 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:17] snes jacobian assemble (iter 3) finished in 0.033687 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:17] snes residual assemble (iter 4) finished in 0.021394 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:17] Completed time-step 50 [time=0.500000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:17] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:17] snes jacobian assemble finished in 0.111383 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:17] snes residual assemble finished in 0.094773 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:17] snes total assemble finished in 0.206157 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:17] snes total solve finished in 0.104003 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:17] snes all finished in 0.310161 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:17] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:17] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:17] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:17] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:17] KSP residual norm: 1.593624112848244e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:17] Total time step finished in 0.312821 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:17] Beginning time-step 51 [time=0.510000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:17] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 15.241578555492197\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:17] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:17] snes residual assemble (iter 1) finished in 0.021037 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:17] snes jacobian assemble (iter 1) finished in 0.036454 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:17] snes residual assemble (iter 2) finished in 0.021151 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:18] snes jacobian assemble (iter 2) finished in 0.036519 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:18] snes residual assemble (iter 3) finished in 0.021646 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:18] snes jacobian assemble (iter 3) finished in 0.033573 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:18] snes residual assemble (iter 4) finished in 0.022557 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:18] Completed time-step 51 [time=0.510000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:18] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:18] snes jacobian assemble finished in 0.106547 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:18] snes residual assemble finished in 0.086392 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:18] snes total assemble finished in 0.192940 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:18] snes total solve finished in 0.102036 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:18] snes all finished in 0.294976 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:18] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:18] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:18] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:18] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:18] KSP residual norm: 1.3000582435847777e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:18] Total time step finished in 0.297855 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:18] Beginning time-step 52 [time=0.520000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:18] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 14.51589449709445\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:18] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:18] snes residual assemble (iter 1) finished in 0.025218 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:18] snes jacobian assemble (iter 1) finished in 0.036812 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:18] snes residual assemble (iter 2) finished in 0.021485 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:18] snes jacobian assemble (iter 2) finished in 0.034524 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:18] snes residual assemble (iter 3) finished in 0.021060 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:18] snes jacobian assemble (iter 3) finished in 0.038124 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:18] snes residual assemble (iter 4) finished in 0.022035 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:18] Completed time-step 52 [time=0.520000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:18] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:18] snes jacobian assemble finished in 0.109461 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:18] snes residual assemble finished in 0.089800 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:18] snes total assemble finished in 0.199261 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:18] snes total solve finished in 0.098704 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:18] snes all finished in 0.297966 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:18] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:18] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:18] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:18] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:18] KSP residual norm: 1.033280564053302e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:18] Total time step finished in 0.300632 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:18] Beginning time-step 53 [time=0.530000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:18] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 13.840830096307855\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:18] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:18] snes residual assemble (iter 1) finished in 0.021103 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:18] snes jacobian assemble (iter 1) finished in 0.033655 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:18] snes residual assemble (iter 2) finished in 0.021574 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:18] snes jacobian assemble (iter 2) finished in 0.034105 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:18] snes residual assemble (iter 3) finished in 0.025569 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:18] snes jacobian assemble (iter 3) finished in 0.036794 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:18] snes residual assemble (iter 4) finished in 0.021432 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:18] Completed time-step 53 [time=0.530000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:18] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:18] snes jacobian assemble finished in 0.104555 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:18] snes residual assemble finished in 0.089681 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:18] snes total assemble finished in 0.194236 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:18] snes total solve finished in 0.100238 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:18] snes all finished in 0.294475 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:18] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:18] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:18] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:18] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:18] KSP residual norm: 8.027952750797826e-14\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:18] Total time step finished in 0.297090 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:18] Beginning time-step 54 [time=0.540000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:18] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 13.211784604641252\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:18] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:18] snes residual assemble (iter 1) finished in 0.021998 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:18] snes jacobian assemble (iter 1) finished in 0.034580 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:18] snes residual assemble (iter 2) finished in 0.022956 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:18] snes jacobian assemble (iter 2) finished in 0.041206 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:18] snes residual assemble (iter 3) finished in 0.021847 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:19] snes jacobian assemble (iter 3) finished in 0.033756 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:19] snes residual assemble (iter 4) finished in 0.021664 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:19] Completed time-step 54 [time=0.540000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:19] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:19] snes jacobian assemble finished in 0.109542 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:19] snes residual assemble finished in 0.088467 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:19] snes total assemble finished in 0.198010 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:19] snes total solve finished in 0.098050 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:19] snes all finished in 0.296061 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:19] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:19] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:19] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:19] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:19] KSP residual norm: 6.127561571861569e-14\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:19] Total time step finished in 0.298410 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:19] Beginning time-step 55 [time=0.550000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:19] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 12.624668334171929\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:19] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:19] snes residual assemble (iter 1) finished in 0.021906 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:19] snes jacobian assemble (iter 1) finished in 0.037368 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:19] snes residual assemble (iter 2) finished in 0.022224 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:19] snes jacobian assemble (iter 2) finished in 0.036505 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:19] snes residual assemble (iter 3) finished in 0.022853 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:19] snes jacobian assemble (iter 3) finished in 0.034314 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:19] snes residual assemble (iter 4) finished in 0.024739 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:19] Completed time-step 55 [time=0.550000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:19] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:19] snes jacobian assemble finished in 0.108188 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:19] snes residual assemble finished in 0.091724 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:19] snes total assemble finished in 0.199912 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:19] snes total solve finished in 0.105627 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:19] snes all finished in 0.305539 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:19] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:19] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:19] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:19] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:19] KSP residual norm: 4.612022848417814e-14\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:19] Total time step finished in 0.308322 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:19] Beginning time-step 56 [time=0.560000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:19] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 12.075836016867925\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:19] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:19] snes residual assemble (iter 1) finished in 0.030242 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:19] snes jacobian assemble (iter 1) finished in 0.033840 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:19] snes residual assemble (iter 2) finished in 0.020782 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:19] snes jacobian assemble (iter 2) finished in 0.033972 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:19] snes residual assemble (iter 3) finished in 0.023814 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:19] snes jacobian assemble (iter 3) finished in 0.038010 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:19] snes residual assemble (iter 4) finished in 0.023525 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:19] Completed time-step 56 [time=0.560000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:19] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:19] snes jacobian assemble finished in 0.105823 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:19] snes residual assemble finished in 0.098365 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:19] snes total assemble finished in 0.204189 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:19] snes total solve finished in 0.099484 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:19] snes all finished in 0.303673 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:19] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:19] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:19] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:19] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:19] KSP residual norm: 3.447069859256851e-14\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:19] Total time step finished in 0.308600 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:19] Beginning time-step 57 [time=0.570000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:19] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 11.5620300864407\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:19] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:19] snes residual assemble (iter 1) finished in 0.022354 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:19] snes jacobian assemble (iter 1) finished in 0.035906 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:19] snes residual assemble (iter 2) finished in 0.024335 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:19] snes jacobian assemble (iter 2) finished in 0.039779 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:19] snes residual assemble (iter 3) finished in 0.021760 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:19] snes jacobian assemble (iter 3) finished in 0.033346 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:20] snes residual assemble (iter 4) finished in 0.021823 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:20] Completed time-step 57 [time=0.570000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:20] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:20] snes jacobian assemble finished in 0.109032 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:20] snes residual assemble finished in 0.090273 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:20] snes total assemble finished in 0.199306 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:20] snes total solve finished in 0.100274 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:20] snes all finished in 0.299581 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:20] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:20] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:20] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:20] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:20] KSP residual norm: 2.5598862556751e-14\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:20] Total time step finished in 0.302206 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:20] Beginning time-step 58 [time=0.580000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:20] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 11.080332228584666\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:20] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:20] snes residual assemble (iter 1) finished in 0.022578 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:20] snes jacobian assemble (iter 1) finished in 0.037261 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:20] snes residual assemble (iter 2) finished in 0.021768 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:20] snes jacobian assemble (iter 2) finished in 0.035316 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:20] snes residual assemble (iter 3) finished in 0.022157 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:20] snes jacobian assemble (iter 3) finished in 0.033417 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:20] snes residual assemble (iter 4) finished in 0.023259 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:20] Completed time-step 58 [time=0.580000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:20] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:20] snes jacobian assemble finished in 0.105995 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:20] snes residual assemble finished in 0.089765 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:20] snes total assemble finished in 0.195760 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:20] snes total solve finished in 0.100431 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:20] snes all finished in 0.296191 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:20] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:20] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:20] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:20] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:20] KSP residual norm: 1.8923029932274345e-14\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:20] Total time step finished in 0.298937 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:20] Beginning time-step 59 [time=0.590000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:20] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 10.628121850766092\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:20] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:20] snes residual assemble (iter 1) finished in 0.022445 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:20] snes jacobian assemble (iter 1) finished in 0.035245 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:20] snes residual assemble (iter 2) finished in 0.020918 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:20] snes jacobian assemble (iter 2) finished in 0.035021 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:20] snes residual assemble (iter 3) finished in 0.022203 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:20] snes jacobian assemble (iter 3) finished in 0.037963 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:20] snes residual assemble (iter 4) finished in 0.021132 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:20] Completed time-step 59 [time=0.590000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:20] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:20] snes jacobian assemble finished in 0.108230 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:20] snes residual assemble finished in 0.086700 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:20] snes total assemble finished in 0.194931 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:20] snes total solve finished in 0.095195 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:20] snes all finished in 0.290126 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:20] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:20] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:20] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:20] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:20] KSP residual norm: 1.3927944278987833e-14\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:20] Total time step finished in 0.292630 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:20] Beginning time-step 60 [time=0.600000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:20] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 10.203040364456228\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:20] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:20] snes residual assemble (iter 1) finished in 0.021425 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:20] snes jacobian assemble (iter 1) finished in 0.034286 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:20] snes residual assemble (iter 2) finished in 0.027616 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:20] snes jacobian assemble (iter 2) finished in 0.051742 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:20] snes residual assemble (iter 3) finished in 0.023673 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:20] snes jacobian assemble (iter 3) finished in 0.037065 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] snes residual assemble (iter 4) finished in 0.023218 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:21] Completed time-step 60 [time=0.600000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] snes jacobian assemble finished in 0.123095 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] snes residual assemble finished in 0.095934 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] snes total assemble finished in 0.219029 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] snes total solve finished in 0.107028 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] snes all finished in 0.326058 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:21] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:21] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:21] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:21] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:21] KSP residual norm: 1.0225885127608253e-14\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] Total time step finished in 0.328411 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:21] Beginning time-step 61 [time=0.610000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:21] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 9.802960368460845\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:21] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] snes residual assemble (iter 1) finished in 0.026418 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] snes jacobian assemble (iter 1) finished in 0.037153 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] snes residual assemble (iter 2) finished in 0.021994 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] snes jacobian assemble (iter 2) finished in 0.034751 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] snes residual assemble (iter 3) finished in 0.022554 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] snes jacobian assemble (iter 3) finished in 0.036690 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] snes residual assemble (iter 4) finished in 0.026436 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:21] Completed time-step 61 [time=0.610000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] snes jacobian assemble finished in 0.108596 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] snes residual assemble finished in 0.097403 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] snes total assemble finished in 0.205999 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] snes total solve finished in 0.100053 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] snes all finished in 0.306052 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:21] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:21] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:21] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:21] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:21] KSP residual norm: 7.51087519293885e-15\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] Total time step finished in 0.308951 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:21] Beginning time-step 62 [time=0.620000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:21] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 9.425958979682036\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:21] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] snes residual assemble (iter 1) finished in 0.023957 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] snes jacobian assemble (iter 1) finished in 0.036421 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] snes residual assemble (iter 2) finished in 0.023971 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] snes jacobian assemble (iter 2) finished in 0.036067 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] snes residual assemble (iter 3) finished in 0.022840 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] snes jacobian assemble (iter 3) finished in 0.038677 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] snes residual assemble (iter 4) finished in 0.021215 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:21] Completed time-step 62 [time=0.620000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] snes jacobian assemble finished in 0.111166 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] snes residual assemble finished in 0.091984 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] snes total assemble finished in 0.203151 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] snes total solve finished in 0.100839 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] snes all finished in 0.303990 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:21] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:21] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:21] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:21] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:21] KSP residual norm: 5.557806234161957e-15\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] Total time step finished in 0.307507 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:21] Beginning time-step 63 [time=0.630000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:21] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 9.070294685068347\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:21] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] snes residual assemble (iter 1) finished in 0.021532 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] snes jacobian assemble (iter 1) finished in 0.033369 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] snes residual assemble (iter 2) finished in 0.021216 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] snes jacobian assemble (iter 2) finished in 0.039542 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] snes residual assemble (iter 3) finished in 0.023544 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] snes jacobian assemble (iter 3) finished in 0.048116 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] snes residual assemble (iter 4) finished in 0.026762 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:21] Completed time-step 63 [time=0.630000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] snes jacobian assemble finished in 0.121028 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] snes residual assemble finished in 0.093055 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] snes total assemble finished in 0.214083 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] snes total solve finished in 0.101280 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] snes all finished in 0.315364 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:21] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:21] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:21] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:21] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:21] KSP residual norm: 4.2061472243047e-15\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:21] Total time step finished in 0.317830 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:21] Beginning time-step 64 [time=0.640000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:21] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 8.734387193885595\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:21] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:22] snes residual assemble (iter 1) finished in 0.025055 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:22] snes jacobian assemble (iter 1) finished in 0.037733 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:22] snes residual assemble (iter 2) finished in 0.021889 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:22] snes jacobian assemble (iter 2) finished in 0.034827 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:22] snes residual assemble (iter 3) finished in 0.021309 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:22] snes jacobian assemble (iter 3) finished in 0.033255 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:22] snes residual assemble (iter 4) finished in 0.021338 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:22] Completed time-step 64 [time=0.640000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:22] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:22] snes jacobian assemble finished in 0.105816 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:22] snes residual assemble finished in 0.089592 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:22] snes total assemble finished in 0.195409 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:22] snes total solve finished in 0.101618 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:22] snes all finished in 0.297027 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:22] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:22] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:22] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:22] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:22] KSP residual norm: 3.3191709025127126e-15\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:22] Total time step finished in 0.300848 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:22] Beginning time-step 65 [time=0.650000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:22] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 8.416799853171142\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:22] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:22] snes residual assemble (iter 1) finished in 0.030483 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:22] snes jacobian assemble (iter 1) finished in 0.040347 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:22] snes residual assemble (iter 2) finished in 0.021766 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:22] snes jacobian assemble (iter 2) finished in 0.036074 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:22] snes residual assemble (iter 3) finished in 0.021600 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:22] snes jacobian assemble (iter 3) finished in 0.040311 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:22] snes residual assemble (iter 4) finished in 0.025268 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:22] Completed time-step 65 [time=0.650000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:22] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:22] snes jacobian assemble finished in 0.116733 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:22] snes residual assemble finished in 0.099119 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:22] snes total assemble finished in 0.215852 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:22] snes total solve finished in 0.101845 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:22] snes all finished in 0.317698 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:22] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:22] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:22] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:22] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:22] KSP residual norm: 2.725057783083297e-15\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:22] Total time step finished in 0.320092 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:22] Beginning time-step 66 [time=0.660000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:22] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 8.116224261152638\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:22] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:22] snes residual assemble (iter 1) finished in 0.024153 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:22] snes jacobian assemble (iter 1) finished in 0.037795 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:22] snes residual assemble (iter 2) finished in 0.023659 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:22] snes jacobian assemble (iter 2) finished in 0.042155 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:22] snes residual assemble (iter 3) finished in 0.023706 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:22] snes jacobian assemble (iter 3) finished in 0.036026 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:22] snes residual assemble (iter 4) finished in 0.021316 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:22] Completed time-step 66 [time=0.660000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:22] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:22] snes jacobian assemble finished in 0.115977 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:22] snes residual assemble finished in 0.092835 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:22] snes total assemble finished in 0.208812 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:22] snes total solve finished in 0.100180 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:22] snes all finished in 0.308993 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:22] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:22] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:22] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:22] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:22] KSP residual norm: 2.2589833061746794e-15\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:22] Total time step finished in 0.311550 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:22] Beginning time-step 67 [time=0.670000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:22] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 7.831466769698636\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:22] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:22] snes residual assemble (iter 1) finished in 0.021829 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:23] snes jacobian assemble (iter 1) finished in 0.033651 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:23] snes residual assemble (iter 2) finished in 0.020843 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:23] snes jacobian assemble (iter 2) finished in 0.037499 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:23] snes residual assemble (iter 3) finished in 0.021605 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:23] snes jacobian assemble (iter 3) finished in 0.033429 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:23] snes residual assemble (iter 4) finished in 0.021172 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:23] Completed time-step 67 [time=0.670000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:23] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:23] snes jacobian assemble finished in 0.104580 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:23] snes residual assemble finished in 0.085450 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:23] snes total assemble finished in 0.190030 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:23] snes total solve finished in 0.096899 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:23] snes all finished in 0.286929 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:23] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:23] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:23] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:23] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:23] KSP residual norm: 1.861614135880947e-15\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:23] Total time step finished in 0.289164 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:23] Beginning time-step 68 [time=0.680000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:23] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 7.561436615321782\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:23] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:23] snes residual assemble (iter 1) finished in 0.031039 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:23] snes jacobian assemble (iter 1) finished in 0.037364 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:23] snes residual assemble (iter 2) finished in 0.024336 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:23] snes jacobian assemble (iter 2) finished in 0.039151 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:23] snes residual assemble (iter 3) finished in 0.022467 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:23] snes jacobian assemble (iter 3) finished in 0.036744 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:23] snes residual assemble (iter 4) finished in 0.023292 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:23] Completed time-step 68 [time=0.680000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:23] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:23] snes jacobian assemble finished in 0.113260 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:23] snes residual assemble finished in 0.101136 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:23] snes total assemble finished in 0.214396 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:23] snes total solve finished in 0.103085 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:23] snes all finished in 0.317481 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:23] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:23] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:23] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:23] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:23] KSP residual norm: 1.5390316488077625e-15\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:23] Total time step finished in 0.319809 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:23] Beginning time-step 69 [time=0.690000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:23] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 7.30513545828444\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:23] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:23] snes residual assemble (iter 1) finished in 0.028037 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:23] snes jacobian assemble (iter 1) finished in 0.039994 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:23] snes residual assemble (iter 2) finished in 0.023881 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:23] snes jacobian assemble (iter 2) finished in 0.038055 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:23] snes residual assemble (iter 3) finished in 0.021635 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:23] snes jacobian assemble (iter 3) finished in 0.033578 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:23] snes residual assemble (iter 4) finished in 0.024785 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:23] Completed time-step 69 [time=0.690000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:23] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:23] snes jacobian assemble finished in 0.111627 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:23] snes residual assemble finished in 0.098340 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:23] snes total assemble finished in 0.209967 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:23] snes total solve finished in 0.099540 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:23] snes all finished in 0.309508 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:23] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:23] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:23] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:23] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:23] KSP residual norm: 8.750829778933665e-16\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:23] Total time step finished in 0.313028 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:23] Beginning time-step 70 [time=0.700000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:23] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 7.061648141734622\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:23] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:23] snes residual assemble (iter 1) finished in 0.021854 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:23] snes jacobian assemble (iter 1) finished in 0.034382 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:24] snes residual assemble (iter 2) finished in 0.022032 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:24] snes jacobian assemble (iter 2) finished in 0.042688 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:24] snes residual assemble (iter 3) finished in 0.032436 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:24] snes jacobian assemble (iter 3) finished in 0.060048 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:24] snes residual assemble (iter 4) finished in 0.030714 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:24] Completed time-step 70 [time=0.700000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:24] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:24] snes jacobian assemble finished in 0.137119 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:24] snes residual assemble finished in 0.107039 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:24] snes total assemble finished in 0.244158 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:24] snes total solve finished in 0.130535 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:24] snes all finished in 0.374694 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:24] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:24] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:24] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:24] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:24] KSP residual norm: 8.107124028214074e-16\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:24] Total time step finished in 0.377565 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:24] Beginning time-step 71 [time=0.710000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:24] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 6.830134511176311\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:24] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:24] snes residual assemble (iter 1) finished in 0.022114 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:24] snes jacobian assemble (iter 1) finished in 0.033315 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:24] snes residual assemble (iter 2) finished in 0.026559 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:24] snes jacobian assemble (iter 2) finished in 0.046478 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:24] snes residual assemble (iter 3) finished in 0.021998 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:24] snes jacobian assemble (iter 3) finished in 0.035578 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:24] snes residual assemble (iter 4) finished in 0.023009 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:24] Completed time-step 71 [time=0.710000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:24] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:24] snes jacobian assemble finished in 0.115373 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:24] snes residual assemble finished in 0.093682 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:24] snes total assemble finished in 0.209055 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:24] snes total solve finished in 0.106869 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:24] snes all finished in 0.315924 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:24] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:24] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:24] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:24] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:24] KSP residual norm: 7.833144636119922e-16\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:24] Total time step finished in 0.318363 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:24] Beginning time-step 72 [time=0.720000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:24] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 6.609822157270173\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:24] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:24] snes residual assemble (iter 1) finished in 0.024241 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:24] snes jacobian assemble (iter 1) finished in 0.035088 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:24] snes residual assemble (iter 2) finished in 0.021012 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:24] snes jacobian assemble (iter 2) finished in 0.034197 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:24] snes residual assemble (iter 3) finished in 0.021063 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:24] snes jacobian assemble (iter 3) finished in 0.033452 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:24] snes residual assemble (iter 4) finished in 0.024431 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:24] Completed time-step 72 [time=0.720000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:24] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:24] snes jacobian assemble finished in 0.102737 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:24] snes residual assemble finished in 0.090749 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:24] snes total assemble finished in 0.193487 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:24] snes total solve finished in 0.095650 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:24] snes all finished in 0.289138 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:24] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:24] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:24] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:24] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:24] KSP residual norm: 7.720692950761241e-16\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:24] Total time step finished in 0.292216 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:24] Beginning time-step 73 [time=0.730000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:24] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 6.399999965049119\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:24] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:24] snes residual assemble (iter 1) finished in 0.021972 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:24] snes jacobian assemble (iter 1) finished in 0.033324 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:25] snes residual assemble (iter 2) finished in 0.022258 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:25] snes jacobian assemble (iter 2) finished in 0.039715 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:25] snes residual assemble (iter 3) finished in 0.024382 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:25] snes jacobian assemble (iter 3) finished in 0.036963 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:25] snes residual assemble (iter 4) finished in 0.022689 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:25] Completed time-step 73 [time=0.730000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:25] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:25] snes jacobian assemble finished in 0.110002 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:25] snes residual assemble finished in 0.091303 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:25] snes total assemble finished in 0.201306 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:25] snes total solve finished in 0.098854 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:25] snes all finished in 0.300161 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:25] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:25] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:25] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:25] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:25] KSP residual norm: 7.635419298195447e-16\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:25] Total time step finished in 0.302763 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:25] Beginning time-step 74 [time=0.740000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:25] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 6.200012368253738\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:25] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:25] snes residual assemble (iter 1) finished in 0.024907 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:25] snes jacobian assemble (iter 1) finished in 0.039264 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:25] snes residual assemble (iter 2) finished in 0.026097 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:25] snes jacobian assemble (iter 2) finished in 0.038690 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:25] snes residual assemble (iter 3) finished in 0.022539 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:25] snes jacobian assemble (iter 3) finished in 0.034187 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:25] snes residual assemble (iter 4) finished in 0.021770 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:25] Completed time-step 74 [time=0.740000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:25] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:25] snes jacobian assemble finished in 0.112141 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:25] snes residual assemble finished in 0.095314 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:25] snes total assemble finished in 0.207456 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:25] snes total solve finished in 0.100264 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:25] snes all finished in 0.307720 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:25] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:25] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:25] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:25] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:25] KSP residual norm: 7.484121967656576e-16\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:25] Total time step finished in 0.310188 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:25] Beginning time-step 75 [time=0.750000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:25] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 6.009254222601612\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:25] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:25] snes residual assemble (iter 1) finished in 0.022228 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:25] snes jacobian assemble (iter 1) finished in 0.038061 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:25] snes residual assemble (iter 2) finished in 0.022372 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:25] snes jacobian assemble (iter 2) finished in 0.036814 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:25] snes residual assemble (iter 3) finished in 0.021313 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:25] snes jacobian assemble (iter 3) finished in 0.033200 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:25] snes residual assemble (iter 4) finished in 0.021721 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:25] Completed time-step 75 [time=0.750000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:25] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:25] snes jacobian assemble finished in 0.108077 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:25] snes residual assemble finished in 0.087636 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:25] snes total assemble finished in 0.195713 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:25] snes total solve finished in 0.099134 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:25] snes all finished in 0.294847 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:25] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:25] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:25] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:25] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:25] KSP residual norm: 7.206209754063415e-16\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:25] Total time step finished in 0.297537 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:25] Beginning time-step 76 [time=0.760000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:25] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 5.827166222672986\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:25] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:25] snes residual assemble (iter 1) finished in 0.022115 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:25] snes jacobian assemble (iter 1) finished in 0.037200 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:25] snes residual assemble (iter 2) finished in 0.021440 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:26] snes jacobian assemble (iter 2) finished in 0.035496 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:26] snes residual assemble (iter 3) finished in 0.021373 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:26] snes jacobian assemble (iter 3) finished in 0.034250 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:26] snes residual assemble (iter 4) finished in 0.026094 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:26] Completed time-step 76 [time=0.760000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:26] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:26] snes jacobian assemble finished in 0.106947 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:26] snes residual assemble finished in 0.091023 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:26] snes total assemble finished in 0.197970 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:26] snes total solve finished in 0.101594 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:26] snes all finished in 0.299565 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:26] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:26] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:26] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:26] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:26] KSP residual norm: 6.914734948812872e-16\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:26] Total time step finished in 0.302046 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:26] Beginning time-step 77 [time=0.770000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:26] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 5.653230797327069\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:26] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:26] snes residual assemble (iter 1) finished in 0.025029 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:26] snes jacobian assemble (iter 1) finished in 0.036161 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:26] snes residual assemble (iter 2) finished in 0.028159 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:26] snes jacobian assemble (iter 2) finished in 0.042288 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:26] snes residual assemble (iter 3) finished in 0.028525 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:26] snes jacobian assemble (iter 3) finished in 0.056850 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:26] snes residual assemble (iter 4) finished in 0.023295 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:26] Completed time-step 77 [time=0.770000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:26] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:26] snes jacobian assemble finished in 0.135301 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:26] snes residual assemble finished in 0.105009 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:26] snes total assemble finished in 0.240311 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:26] snes total solve finished in 0.112796 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:26] snes all finished in 0.353107 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:26] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:26] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:26] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:26] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:26] KSP residual norm: 5.809803835839651e-16\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:26] Total time step finished in 0.356729 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:26] Beginning time-step 78 [time=0.780000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:26] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 5.486968427908323\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:26] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:26] snes residual assemble (iter 1) finished in 0.023642 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:26] snes jacobian assemble (iter 1) finished in 0.036714 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:26] snes residual assemble (iter 2) finished in 0.027225 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:26] snes jacobian assemble (iter 2) finished in 0.039019 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:26] snes residual assemble (iter 3) finished in 0.024645 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:26] snes jacobian assemble (iter 3) finished in 0.036390 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:26] snes residual assemble (iter 4) finished in 0.021126 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:26] Completed time-step 78 [time=0.780000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:26] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:26] snes jacobian assemble finished in 0.112124 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:26] snes residual assemble finished in 0.096640 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:26] snes total assemble finished in 0.208764 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:26] snes total solve finished in 0.099687 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:26] snes all finished in 0.308452 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:26] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:26] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:26] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:26] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:26] KSP residual norm: 5.316671227126911e-16\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:26] Total time step finished in 0.310872 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:26] Beginning time-step 79 [time=0.790000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:26] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 5.327934339686635\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:26] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:26] snes residual assemble (iter 1) finished in 0.022702 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:26] snes jacobian assemble (iter 1) finished in 0.037795 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:26] snes residual assemble (iter 2) finished in 0.021145 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:27] snes jacobian assemble (iter 2) finished in 0.035867 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:27] snes residual assemble (iter 3) finished in 0.021215 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:27] snes jacobian assemble (iter 3) finished in 0.032561 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:27] snes residual assemble (iter 4) finished in 0.022569 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:27] Completed time-step 79 [time=0.790000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:27] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:27] snes jacobian assemble finished in 0.106224 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:27] snes residual assemble finished in 0.087633 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:27] snes total assemble finished in 0.193857 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:27] snes total solve finished in 0.095762 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:27] snes all finished in 0.289620 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:27] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:27] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:27] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:27] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:27] KSP residual norm: 4.684744049853575e-16\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:27] Total time step finished in 0.291889 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:27] Beginning time-step 80 [time=0.800000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:27] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 5.175715524183033\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:27] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:27] snes residual assemble (iter 1) finished in 0.025651 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:27] snes jacobian assemble (iter 1) finished in 0.035682 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:27] snes residual assemble (iter 2) finished in 0.022213 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:27] snes jacobian assemble (iter 2) finished in 0.035494 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:27] snes residual assemble (iter 3) finished in 0.022077 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:27] snes jacobian assemble (iter 3) finished in 0.035619 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:27] snes residual assemble (iter 4) finished in 0.023352 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:27] Completed time-step 80 [time=0.800000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:27] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:27] snes jacobian assemble finished in 0.106796 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:27] snes residual assemble finished in 0.093295 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:27] snes total assemble finished in 0.200091 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:27] snes total solve finished in 0.102320 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:27] snes all finished in 0.302411 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:27] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:27] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:27] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:27] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:27] KSP residual norm: 4.1023882988327284e-16\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:27] Total time step finished in 0.305363 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:27] Beginning time-step 81 [time=0.810000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:27] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 5.029928055068922\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:27] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:27] snes residual assemble (iter 1) finished in 0.023232 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:27] snes jacobian assemble (iter 1) finished in 0.034666 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:27] snes residual assemble (iter 2) finished in 0.025102 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:27] snes jacobian assemble (iter 2) finished in 0.042673 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:27] snes residual assemble (iter 3) finished in 0.024401 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:27] snes jacobian assemble (iter 3) finished in 0.036988 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:27] snes residual assemble (iter 4) finished in 0.022631 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:27] Completed time-step 81 [time=0.810000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:27] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:27] snes jacobian assemble finished in 0.114328 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:27] snes residual assemble finished in 0.095367 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:27] snes total assemble finished in 0.209695 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:27] snes total solve finished in 0.101089 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:27] snes all finished in 0.310785 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:27] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:27] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:27] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:27] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:27] KSP residual norm: 3.698053540671528e-16\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:27] Total time step finished in 0.313306 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:27] Beginning time-step 82 [time=0.820000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:27] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 4.890214664828818\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:27] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:27] snes residual assemble (iter 1) finished in 0.021844 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:27] snes jacobian assemble (iter 1) finished in 0.034502 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:27] snes residual assemble (iter 2) finished in 0.024611 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:27] snes jacobian assemble (iter 2) finished in 0.043726 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:28] snes residual assemble (iter 3) finished in 0.023078 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:28] snes jacobian assemble (iter 3) finished in 0.034719 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:28] snes residual assemble (iter 4) finished in 0.021985 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:28] Completed time-step 82 [time=0.820000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:28] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:28] snes jacobian assemble finished in 0.112949 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:28] snes residual assemble finished in 0.091519 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:28] snes total assemble finished in 0.204468 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:28] snes total solve finished in 0.102554 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:28] snes all finished in 0.307023 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:28] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:28] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:28] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:28] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:28] KSP residual norm: 3.3415381904134336e-16\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:28] Total time step finished in 0.310116 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:28] Beginning time-step 83 [time=0.830000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:28] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 4.756242554014989\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:28] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:28] snes residual assemble (iter 1) finished in 0.024341 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:28] snes jacobian assemble (iter 1) finished in 0.035718 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:28] snes residual assemble (iter 2) finished in 0.021451 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:28] snes jacobian assemble (iter 2) finished in 0.038601 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:28] snes residual assemble (iter 3) finished in 0.021474 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:28] snes jacobian assemble (iter 3) finished in 0.035004 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:28] snes residual assemble (iter 4) finished in 0.022008 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:28] Completed time-step 83 [time=0.830000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:28] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:28] snes jacobian assemble finished in 0.109325 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:28] snes residual assemble finished in 0.089275 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:28] snes total assemble finished in 0.198600 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:28] snes total solve finished in 0.103529 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:28] snes all finished in 0.302129 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:28] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:28] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:28] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:28] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:28] KSP residual norm: 3.9472653308708053e-16\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:28] Total time step finished in 0.304368 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:28] Beginning time-step 84 [time=0.840000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:28] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 4.627701407491713\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:28] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:28] snes residual assemble (iter 1) finished in 0.021756 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:28] snes jacobian assemble (iter 1) finished in 0.034123 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:28] snes residual assemble (iter 2) finished in 0.022212 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:28] snes jacobian assemble (iter 2) finished in 0.039309 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:28] snes residual assemble (iter 3) finished in 0.026356 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:28] snes jacobian assemble (iter 3) finished in 0.038195 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:28] snes residual assemble (iter 4) finished in 0.023742 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:28] Completed time-step 84 [time=0.840000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:28] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:28] snes jacobian assemble finished in 0.111628 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:28] snes residual assemble finished in 0.094068 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:28] snes total assemble finished in 0.205697 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:28] snes total solve finished in 0.112618 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:28] snes all finished in 0.318315 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:28] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:28] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:28] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:28] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:28] KSP residual norm: 6.160870158542332e-16\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:28] Total time step finished in 0.321044 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:28] Beginning time-step 85 [time=0.850000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:28] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 4.504301595852667\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:28] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:28] snes residual assemble (iter 1) finished in 0.024243 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:28] snes jacobian assemble (iter 1) finished in 0.039020 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:28] snes residual assemble (iter 2) finished in 0.025742 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:28] snes jacobian assemble (iter 2) finished in 0.040530 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:28] snes residual assemble (iter 3) finished in 0.021984 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:29] snes jacobian assemble (iter 3) finished in 0.036015 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:29] snes residual assemble (iter 4) finished in 0.024853 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:29] Completed time-step 85 [time=0.850000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:29] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:29] snes jacobian assemble finished in 0.115566 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:29] snes residual assemble finished in 0.096823 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:29] snes total assemble finished in 0.212389 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:29] snes total solve finished in 0.107151 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:29] snes all finished in 0.319541 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:29] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:29] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:29] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:29] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:29] KSP residual norm: 2.6444083907223465e-16\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:29] Total time step finished in 0.322551 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:29] Beginning time-step 86 [time=0.860000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:29] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 4.385772542593713\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:29] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:29] snes residual assemble (iter 1) finished in 0.023246 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:29] snes jacobian assemble (iter 1) finished in 0.033374 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:29] snes residual assemble (iter 2) finished in 0.020750 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:29] snes jacobian assemble (iter 2) finished in 0.033525 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:29] snes residual assemble (iter 3) finished in 0.021260 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:29] snes jacobian assemble (iter 3) finished in 0.037197 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:29] snes residual assemble (iter 4) finished in 0.021821 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:29] Completed time-step 86 [time=0.860000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:29] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:29] snes jacobian assemble finished in 0.104097 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:29] snes residual assemble finished in 0.087079 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:29] snes total assemble finished in 0.191177 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:29] snes total solve finished in 0.101452 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:29] snes all finished in 0.292629 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:29] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:29] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:29] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:29] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:29] KSP residual norm: 2.1662213761359051e-16\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:29] Total time step finished in 0.294925 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:29] Beginning time-step 87 [time=0.870000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:29] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 4.271861239544705\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:29] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:29] snes residual assemble (iter 1) finished in 0.021109 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:29] snes jacobian assemble (iter 1) finished in 0.033092 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:29] snes residual assemble (iter 2) finished in 0.021153 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:29] snes jacobian assemble (iter 2) finished in 0.038681 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:29] snes residual assemble (iter 3) finished in 0.024367 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:29] snes jacobian assemble (iter 3) finished in 0.034921 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:29] snes residual assemble (iter 4) finished in 0.022879 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:29] Completed time-step 87 [time=0.870000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:29] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:29] snes jacobian assemble finished in 0.106695 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:29] snes residual assemble finished in 0.089510 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:29] snes total assemble finished in 0.196205 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:29] snes total solve finished in 0.100950 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:29] snes all finished in 0.297155 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:29] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:29] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:29] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:29] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:29] KSP residual norm: 1.8526497422739492e-16\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:29] Total time step finished in 0.300023 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:29] Beginning time-step 88 [time=0.880000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:29] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 4.162330895690047\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:29] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:29] snes residual assemble (iter 1) finished in 0.022651 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:29] snes jacobian assemble (iter 1) finished in 0.034137 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:29] snes residual assemble (iter 2) finished in 0.022836 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:29] snes jacobian assemble (iter 2) finished in 0.038412 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:29] snes residual assemble (iter 3) finished in 0.023277 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:29] snes jacobian assemble (iter 3) finished in 0.034143 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:30] snes residual assemble (iter 4) finished in 0.021173 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:30] Completed time-step 88 [time=0.880000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:30] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:30] snes jacobian assemble finished in 0.106693 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:30] snes residual assemble finished in 0.089939 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:30] snes total assemble finished in 0.196632 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:30] snes total solve finished in 0.100128 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:30] snes all finished in 0.296760 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:30] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:30] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:30] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:30] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:30] KSP residual norm: 1.6075458131261299e-16\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:30] Total time step finished in 0.299053 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:30] Beginning time-step 89 [time=0.890000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:30] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 4.056959705496865\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:30] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:30] snes residual assemble (iter 1) finished in 0.022015 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:30] snes jacobian assemble (iter 1) finished in 0.033714 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:30] snes residual assemble (iter 2) finished in 0.022967 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:30] snes jacobian assemble (iter 2) finished in 0.044622 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:30] snes residual assemble (iter 3) finished in 0.033151 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:30] snes jacobian assemble (iter 3) finished in 0.036874 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:30] snes residual assemble (iter 4) finished in 0.023984 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:30] Completed time-step 89 [time=0.890000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:30] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:30] snes jacobian assemble finished in 0.115211 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:30] snes residual assemble finished in 0.102118 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:30] snes total assemble finished in 0.217329 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:30] snes total solve finished in 0.109731 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:30] snes all finished in 0.327061 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:30] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:30] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:30] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:30] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:30] KSP residual norm: 1.4223930695843735e-16\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:30] Total time step finished in 0.329618 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:30] Beginning time-step 90 [time=0.900000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:30] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 3.9555397251433533\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:30] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:30] snes residual assemble (iter 1) finished in 0.027923 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:30] snes jacobian assemble (iter 1) finished in 0.035221 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:30] snes residual assemble (iter 2) finished in 0.021586 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:30] snes jacobian assemble (iter 2) finished in 0.036072 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:30] snes residual assemble (iter 3) finished in 0.022192 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:30] snes jacobian assemble (iter 3) finished in 0.036858 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:30] snes residual assemble (iter 4) finished in 0.023476 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:30] Completed time-step 90 [time=0.900000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:30] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:30] snes jacobian assemble finished in 0.108153 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:30] snes residual assemble finished in 0.095180 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:30] snes total assemble finished in 0.203333 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:30] snes total solve finished in 0.102418 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:30] snes all finished in 0.305752 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:30] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:30] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:30] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:30] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:30] KSP residual norm: 1.2813020828696223e-16\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:30] Total time step finished in 0.308602 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:30] Beginning time-step 91 [time=0.910000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:30] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 3.857875845903891\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:30] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:30] snes residual assemble (iter 1) finished in 0.023701 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:30] snes jacobian assemble (iter 1) finished in 0.036780 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:30] snes residual assemble (iter 2) finished in 0.023137 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:30] snes jacobian assemble (iter 2) finished in 0.048364 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:30] snes residual assemble (iter 3) finished in 0.024520 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:30] snes jacobian assemble (iter 3) finished in 0.046268 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:31] snes residual assemble (iter 4) finished in 0.028554 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:31] Completed time-step 91 [time=0.910000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:31] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:31] snes jacobian assemble finished in 0.131413 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:31] snes residual assemble finished in 0.099913 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:31] snes total assemble finished in 0.231326 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:31] snes total solve finished in 0.111413 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:31] snes all finished in 0.342739 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:31] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:31] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:31] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:31] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:31] KSP residual norm: 1.1700201738753475e-16\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:31] Total time step finished in 0.345139 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:31] Beginning time-step 92 [time=0.920000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:31] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 3.7637848549479713\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:31] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:31] snes residual assemble (iter 1) finished in 0.022375 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:31] snes jacobian assemble (iter 1) finished in 0.036445 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:31] snes residual assemble (iter 2) finished in 0.023973 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:31] snes jacobian assemble (iter 2) finished in 0.042175 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:31] snes residual assemble (iter 3) finished in 0.026472 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:31] snes jacobian assemble (iter 3) finished in 0.042077 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:31] snes residual assemble (iter 4) finished in 0.029633 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:31] Completed time-step 92 [time=0.920000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:31] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:31] snes jacobian assemble finished in 0.120698 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:31] snes residual assemble finished in 0.102454 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:31] snes total assemble finished in 0.223153 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:31] snes total solve finished in 0.115921 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:31] snes all finished in 0.339074 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:31] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:31] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:31] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:31] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:31] KSP residual norm: 1.0788279283486994e-16\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:31] Total time step finished in 0.342510 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:31] Beginning time-step 93 [time=0.930000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:31] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 3.6730945755721223\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:31] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:31] snes residual assemble (iter 1) finished in 0.030324 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:31] snes jacobian assemble (iter 1) finished in 0.043549 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:31] snes residual assemble (iter 2) finished in 0.025573 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:31] snes jacobian assemble (iter 2) finished in 0.037487 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:31] snes residual assemble (iter 3) finished in 0.026515 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:31] snes jacobian assemble (iter 3) finished in 0.044470 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:31] snes residual assemble (iter 4) finished in 0.023030 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:31] Completed time-step 93 [time=0.930000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:31] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:31] snes jacobian assemble finished in 0.125507 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:31] snes residual assemble finished in 0.105444 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:31] snes total assemble finished in 0.230952 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:31] snes total solve finished in 0.111902 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:31] snes all finished in 0.342854 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:31] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:31] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:31] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:31] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:31] KSP residual norm: 1.0014995639145303e-16\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:31] Total time step finished in 0.347527 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:31] Beginning time-step 94 [time=0.940000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:31] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 3.5856430789408478\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:31] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:31] snes residual assemble (iter 1) finished in 0.022787 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:31] snes jacobian assemble (iter 1) finished in 0.045169 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:31] snes residual assemble (iter 2) finished in 0.029374 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:31] snes jacobian assemble (iter 2) finished in 0.049008 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:32] snes residual assemble (iter 3) finished in 0.028402 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:32] snes jacobian assemble (iter 3) finished in 0.040011 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:32] snes residual assemble (iter 4) finished in 0.025616 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:32] Completed time-step 94 [time=0.940000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:32] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:32] snes jacobian assemble finished in 0.134189 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:32] snes residual assemble finished in 0.106180 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:32] snes total assemble finished in 0.240370 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:32] snes total solve finished in 0.115581 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:32] snes all finished in 0.355952 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:32] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:32] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:32] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:32] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:32] KSP residual norm: 9.34152256654957e-17\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:32] Total time step finished in 0.358586 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:32] Beginning time-step 95 [time=0.950000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:32] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 3.501277960731386\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:32] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:32] snes residual assemble (iter 1) finished in 0.024330 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:32] snes jacobian assemble (iter 1) finished in 0.036896 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:32] snes residual assemble (iter 2) finished in 0.022428 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:32] snes jacobian assemble (iter 2) finished in 0.038062 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:32] snes residual assemble (iter 3) finished in 0.025894 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:32] snes jacobian assemble (iter 3) finished in 0.040110 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:32] snes residual assemble (iter 4) finished in 0.022240 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:32] Completed time-step 95 [time=0.950000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:32] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:32] snes jacobian assemble finished in 0.115069 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:32] snes residual assemble finished in 0.094893 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:32] snes total assemble finished in 0.209963 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:32] snes total solve finished in 0.107225 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:32] snes all finished in 0.317188 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:32] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:32] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:32] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:32] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:32] KSP residual norm: 8.743574098495177e-17\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:32] Total time step finished in 0.320225 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:32] Beginning time-step 96 [time=0.960000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:32] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 3.419855676759198\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:32] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:32] snes residual assemble (iter 1) finished in 0.022010 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:32] snes jacobian assemble (iter 1) finished in 0.034782 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:32] snes residual assemble (iter 2) finished in 0.027768 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:32] snes jacobian assemble (iter 2) finished in 0.046126 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:32] snes residual assemble (iter 3) finished in 0.024960 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:32] snes jacobian assemble (iter 3) finished in 0.036788 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:32] snes residual assemble (iter 4) finished in 0.023446 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:32] Completed time-step 96 [time=0.960000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:32] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:32] snes jacobian assemble finished in 0.117697 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:32] snes residual assemble finished in 0.098185 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:32] snes total assemble finished in 0.215883 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:32] snes total solve finished in 0.105919 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:32] snes all finished in 0.321803 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:32] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:32] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:32] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:32] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:32] KSP residual norm: 8.205276898226393e-17\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:32] Total time step finished in 0.324150 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:32] Beginning time-step 97 [time=0.970000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:32] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 3.3412409319112157\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:32] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:32] snes residual assemble (iter 1) finished in 0.025300 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:32] snes jacobian assemble (iter 1) finished in 0.035071 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:32] snes residual assemble (iter 2) finished in 0.022115 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:32] snes jacobian assemble (iter 2) finished in 0.038849 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:33] snes residual assemble (iter 3) finished in 0.022588 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:33] snes jacobian assemble (iter 3) finished in 0.041673 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:33] snes residual assemble (iter 4) finished in 0.022616 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:33] Completed time-step 97 [time=0.970000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:33] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:33] snes jacobian assemble finished in 0.115594 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:33] snes residual assemble finished in 0.092620 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:33] snes total assemble finished in 0.208215 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:33] snes total solve finished in 0.106183 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:33] snes all finished in 0.314398 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:33] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:33] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:33] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:33] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:33] KSP residual norm: 7.716415048468712e-17\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:33] Total time step finished in 0.317089 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:33] Beginning time-step 98 [time=0.980000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:33] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 3.2653061178052667\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:33] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:33] snes residual assemble (iter 1) finished in 0.022601 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:33] snes jacobian assemble (iter 1) finished in 0.035482 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:33] snes residual assemble (iter 2) finished in 0.022201 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:33] snes jacobian assemble (iter 2) finished in 0.038401 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:33] snes residual assemble (iter 3) finished in 0.024711 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:33] snes jacobian assemble (iter 3) finished in 0.040953 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:33] snes residual assemble (iter 4) finished in 0.022039 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:33] Completed time-step 98 [time=0.980000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:33] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:33] snes jacobian assemble finished in 0.114838 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:33] snes residual assemble finished in 0.091552 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:33] snes total assemble finished in 0.206390 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:33] snes total solve finished in 0.101113 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:33] snes all finished in 0.307503 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:33] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:33] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:33] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:33] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:33] KSP residual norm: 7.269805673779013e-17\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:33] Total time step finished in 0.309736 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:33] Beginning time-step 99 [time=0.990000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:33] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 3.1919307945941\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:33] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:33] snes residual assemble (iter 1) finished in 0.022440 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:33] snes jacobian assemble (iter 1) finished in 0.035218 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:33] snes residual assemble (iter 2) finished in 0.024851 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:33] snes jacobian assemble (iter 2) finished in 0.037322 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:33] snes residual assemble (iter 3) finished in 0.030677 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:33] snes jacobian assemble (iter 3) finished in 0.036091 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:33] snes residual assemble (iter 4) finished in 0.054163 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:33] Completed time-step 99 [time=0.990000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:33] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:33] snes jacobian assemble finished in 0.108633 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:33] snes residual assemble finished in 0.132133 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:33] snes total assemble finished in 0.240767 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:33] snes total solve finished in 0.143686 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:33] snes all finished in 0.384453 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:33] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:33] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:33] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:33] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:33] KSP residual norm: 6.85933787468143e-17\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:33] Total time step finished in 0.387237 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:33] Beginning time-step 100 [time=1.000000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:33] Time-dependent parameter j1pulse updated by pre-integrated expression. New value is 3.1210012131509757\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:33] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:33] snes residual assemble (iter 1) finished in 0.026574 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:33] snes jacobian assemble (iter 1) finished in 0.036518 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:33] snes residual assemble (iter 2) finished in 0.022340 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:34] snes jacobian assemble (iter 2) finished in 0.038769 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:34] snes residual assemble (iter 3) finished in 0.025737 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:34] snes jacobian assemble (iter 3) finished in 0.036178 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:34] snes residual assemble (iter 4) finished in 0.021750 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-12 time=17:55:34] Completed time-step 100 [time=1.000000, dt=0.010000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:34] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:34] snes jacobian assemble finished in 0.111466 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:34] snes residual assemble finished in 0.096403 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:34] snes total assemble finished in 0.207869 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:34] snes total solve finished in 0.106199 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:34] snes all finished in 0.314069 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:34] Non-linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:34] Linear solver iterations: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:34] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:34] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-12 time=17:55:34] KSP residual norm: 6.481317457403713e-17\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-12 time=17:55:34] Total time step finished in 0.318089 s\u001b[0m \u001b[97m\u001b[0m\n" + ] + } + ], + "source": [ + "# Write initial condition(s) to file\n", + "results = dict()\n", + "os.makedirs(\"resultsSphere\", exist_ok=True)\n", + "for species_name, species in model.sc.items:\n", + " results[species_name] = d.XDMFFile(\n", + " model.mpi_comm_world, f\"resultsSphere/{species_name}.xdmf\"\n", + " )\n", + " results[species_name].parameters[\"flush_output\"] = True\n", + " results[species_name].write(model.sc[species_name].u[\"u\"], model.t)\n", + "\n", + "# Solve\n", + "while True:\n", + " # Solve the system\n", + " model.monolithic_solve()\n", + " # Save results for post processing\n", + " for species_name, species in model.sc.items:\n", + " results[species_name].write(model.sc[species_name].u[\"u\"], model.t)\n", + " # End if we've passed the final time\n", + " if model.t >= model.final_t:\n", + " break\n" + ] + } + ], + "metadata": { + "jupytext": { + "cell_metadata_filter": "-all", + "main_language": "python", + "notebook_metadata_filter": "-all" + }, + "kernelspec": { + "display_name": "Python 3", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.10.6" + }, + "vscode": { + "interpreter": { + "hash": "31f2aee4e71d21fbe5cf8b01ff0e069b9275f58929596ceb00d14d90e3e16cd6" + } + } + }, + "nbformat": 4, + "nbformat_minor": 5 +} diff --git a/examples/example2/example2.ipynb b/examples/example2/example2.ipynb new file mode 100644 index 00000000..835f53cb --- /dev/null +++ b/examples/example2/example2.ipynb @@ -0,0 +1,245 @@ +{ + "cells": [ + { + "attachments": {}, + "cell_type": "markdown", + "id": "f65f18d7", + "metadata": {}, + "source": [ + "# Example for system in Meyers, Craig and Odde 2006\n", + "\n", + "Geometry is divided into 2 domains; one volume and one surface:\n", + "- PM\n", + "- Cytosol\n", + "\n", + "This model has a single species, A, which is phosphorylated at the cell membrane. The unphosphorylated form of A ($A_{dephos}$) can be inferred from mass conservation; everywhere $c_{A_{phos}} + c_{A_{dephos}} = c_{Tot}$, which is a constant in both time and space if the phosphorylated vs. unphosphorylated forms have the same diffusion coefficient.\n", + "\n", + "There are two reactions - one in the PM and other in the cytosol. At the membrane, $A_{dephos}$ is phosphorylated by a first-order reaction with rate $k_{kin}$, and in the cytosolic volume, $A_{phos}$ is dephosphorylated by a first order reaction with rate $k_p$.\n", + "\n", + "Currently, this code includes a dummy variable, kinMem, which represents relative kinase activity at the membrane, currently set as constant at 1 (dimensionless). Without this additional species, the code currently does not solve the system (it seems that there needs to be variables in at least two compartments to solve the monolithic system).\n" + ] + }, + { + "cell_type": "code", + "execution_count": 1, + "id": "cc398816", + "metadata": {}, + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "Authorization required, but no authorization protocol specified\n", + "Authorization required, but no authorization protocol specified\n" + ] + } + ], + "source": [ + "import os\n", + "\n", + "import dolfin as d\n", + "import sympy as sym\n", + "import numpy as np\n", + "\n", + "from stubs import unit, config, common, mesh, model\n", + "from stubs.model_assembly import Compartment, Parameter, Reaction, Species, sbmodel_from_locals" + ] + }, + { + "attachments": {}, + "cell_type": "markdown", + "id": "95b9d865", + "metadata": {}, + "source": [ + "First, we define the various units for the inputs" + ] + }, + { + "cell_type": "code", + "execution_count": 2, + "id": "4f4023cf", + "metadata": {}, + "outputs": [], + "source": [ + "# Aliases - base units\n", + "uM = unit.uM\n", + "um = unit.um\n", + "molecule = unit.molecule\n", + "sec = unit.sec\n", + "dimensionless = unit.dimensionless\n", + "# Aliases - units used in model\n", + "D_unit = um**2 / sec\n", + "flux_unit = molecule / (um**2 * sec)\n", + "vol_unit = uM\n", + "surf_unit = molecule / um**2" + ] + }, + { + "attachments": {}, + "cell_type": "markdown", + "id": "46582d26", + "metadata": {}, + "source": [ + "Next we generate the model." + ] + }, + { + "cell_type": "code", + "execution_count": 3, + "id": "09079b17", + "metadata": {}, + "outputs": [], + "source": [ + "def make_model(curRadius):\n", + " # =============================================================================================\n", + " # Species\n", + " # =============================================================================================\n", + " # name, initial concentration, concentration units, diffusion, diffusion units, compartment\n", + " Aphos = Species(\"Aphos\", 0.1, vol_unit, 10.0, D_unit, \"Cyto\")\n", + " kinMem = Species(\"kinMem\", 1.0, dimensionless, 0.0, D_unit, \"PM\") # dummy variable; without this, the current version of SMART throws an error\n", + "\n", + " # =============================================================================================\n", + " # Compartments\n", + " # =============================================================================================\n", + " # name, topological dimensionality, length scale units, marker value\n", + " Cyto = Compartment(\"Cyto\", 3, um, 1)\n", + " PM = Compartment(\"PM\", 2, um, 10)\n", + "\n", + " # =============================================================================================\n", + " # Parameters and Reactions\n", + " # =============================================================================================\n", + " Atot = Parameter(\"Atot\", 1.0, vol_unit)\n", + " # Phosphorylation of Adephos at the PM\n", + " kkin = Parameter(\"kkin\", 50.0, 1/sec) \n", + " VolSA = Parameter(\"VolSA\", curRadius/3, um) # vol to surface area ratio of the cell\n", + " r1 = Reaction(\"r1\", [], [\"Aphos\"], param_map={\"kon\": \"kkin\", \"Atot\": \"Atot\", \"VolSA\": \"VolSA\"},\n", + " eqn_f_str=\"kinMem*kon*VolSA*(Atot - Aphos)\", species_map={\"Aphos\": \"Aphos\",\"kinMem\": \"kinMem\"}, explicit_restriction_to_domain=\"PM\")\n", + " # Dephosphorylation of Aphos in the cytosol\n", + " kp = Parameter(\"kp\", 10.0, 1/sec)\n", + " r2 = Reaction(\"r2\", [\"Aphos\"], [], param_map={\"kon\": \"kp\"},\n", + " eqn_f_str=\"kon*Aphos\", species_map={\"Aphos\": \"Aphos\"})\n", + "\n", + " # =============================================================================================\n", + " # Gather all parameters, species, compartments and reactions\n", + " # =============================================================================================\n", + " return sbmodel_from_locals(locals().values())" + ] + }, + { + "attachments": {}, + "cell_type": "markdown", + "id": "15c35d39", + "metadata": {}, + "source": [ + "We load the model generated above, and load in the mesh we will use in this example, iterating over 10 different values of cell radius, log-spaced between 1 and 10." + ] + }, + { + "cell_type": "code", + "execution_count": 4, + "id": "fe56e162", + "metadata": {}, + "outputs": [ + { + "ename": "AttributeError", + "evalue": "module 'stubs.common' has no attribute 'sbmodel_from_locals'", + "output_type": "error", + "traceback": [ + "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m", + "\u001b[0;31mAttributeError\u001b[0m Traceback (most recent call last)", + "Cell \u001b[0;32mIn[4], line 4\u001b[0m\n\u001b[1;32m 2\u001b[0m \u001b[39mfor\u001b[39;00m i \u001b[39min\u001b[39;00m \u001b[39mrange\u001b[39m(\u001b[39m10\u001b[39m):\n\u001b[1;32m 3\u001b[0m curRadius \u001b[39m=\u001b[39m radiusVec[i]\n\u001b[0;32m----> 4\u001b[0m pc, sc, cc, rc \u001b[39m=\u001b[39m make_model(curRadius)\n\u001b[1;32m 6\u001b[0m \u001b[39m# =============================================================================================\u001b[39;00m\n\u001b[1;32m 7\u001b[0m \u001b[39m# Create/load in mesh\u001b[39;00m\n\u001b[1;32m 8\u001b[0m \u001b[39m# =============================================================================================\u001b[39;00m\n\u001b[1;32m 9\u001b[0m \u001b[39m# Base mesh\u001b[39;00m\n\u001b[1;32m 10\u001b[0m domain, facet_markers, cell_markers \u001b[39m=\u001b[39m common\u001b[39m.\u001b[39mDemoSpheresMesh(curRadius, \u001b[39m0\u001b[39m) \u001b[39m#0 in second argument corresponds to no ER\u001b[39;00m\n", + "Cell \u001b[0;32mIn[3], line 33\u001b[0m, in \u001b[0;36mmake_model\u001b[0;34m(curRadius)\u001b[0m\n\u001b[1;32m 27\u001b[0m r2 \u001b[39m=\u001b[39m Reaction(\u001b[39m\"\u001b[39m\u001b[39mr2\u001b[39m\u001b[39m\"\u001b[39m, [\u001b[39m\"\u001b[39m\u001b[39mAphos\u001b[39m\u001b[39m\"\u001b[39m], [], param_map\u001b[39m=\u001b[39m{\u001b[39m\"\u001b[39m\u001b[39mkon\u001b[39m\u001b[39m\"\u001b[39m: \u001b[39m\"\u001b[39m\u001b[39mkp\u001b[39m\u001b[39m\"\u001b[39m},\n\u001b[1;32m 28\u001b[0m eqn_f_str\u001b[39m=\u001b[39m\u001b[39m\"\u001b[39m\u001b[39mkon*Aphos\u001b[39m\u001b[39m\"\u001b[39m, species_map\u001b[39m=\u001b[39m{\u001b[39m\"\u001b[39m\u001b[39mAphos\u001b[39m\u001b[39m\"\u001b[39m: \u001b[39m\"\u001b[39m\u001b[39mAphos\u001b[39m\u001b[39m\"\u001b[39m})\n\u001b[1;32m 30\u001b[0m \u001b[39m# =============================================================================================\u001b[39;00m\n\u001b[1;32m 31\u001b[0m \u001b[39m# Gather all parameters, species, compartments and reactions\u001b[39;00m\n\u001b[1;32m 32\u001b[0m \u001b[39m# =============================================================================================\u001b[39;00m\n\u001b[0;32m---> 33\u001b[0m \u001b[39mreturn\u001b[39;00m common\u001b[39m.\u001b[39;49msbmodel_from_locals(\u001b[39mlocals\u001b[39m()\u001b[39m.\u001b[39mvalues())\n", + "\u001b[0;31mAttributeError\u001b[0m: module 'stubs.common' has no attribute 'sbmodel_from_locals'" + ] + } + ], + "source": [ + "radiusVec = np.logspace(0,1,num=10) # currently testing 10 radius values\n", + "for i in range(10):\n", + " curRadius = radiusVec[i]\n", + " pc, sc, cc, rc = make_model(curRadius)\n", + "\n", + " # =============================================================================================\n", + " # Create/load in mesh\n", + " # =============================================================================================\n", + " # Base mesh\n", + " domain, facet_markers, cell_markers = common.DemoSpheresMesh(curRadius, 0) #0 in second argument corresponds to no ER\n", + " # Write mesh and meshfunctions to file\n", + " os.makedirs(f\"mesh_{i:03d}\", exist_ok=True)\n", + " common.write_mesh(domain, facet_markers, cell_markers, filename=f\"mesh_{i:03d}/DemoSphere\")\n", + "\n", + " # # Define solvers\n", + " parent_mesh = mesh.ParentMesh(\n", + " mesh_filename=f\"mesh_{i:03d}/DemoSphere.h5\",\n", + " mesh_filetype=\"hdf5\",\n", + " name=\"parent_mesh\",\n", + " )\n", + " configCur = config.Config()\n", + " modelCur = model.Model(pc, sc, cc, rc, configCur, parent_mesh)\n", + " configCur.solver.update(\n", + " {\n", + " \"final_t\": 1,\n", + " \"initial_dt\": 0.01,\n", + " \"time_precision\": 6,\n", + " \"use_snes\": True,\n", + " \"print_assembly\": False,\n", + " }\n", + " )\n", + "\n", + " modelCur.initialize(initialize_solver=False)\n", + " modelCur.initialize_discrete_variational_problem_and_solver()\n", + " # Write initial condition(s) to file\n", + " results = dict()\n", + " os.makedirs(f\"resultsSphere_{i:03d}\", exist_ok=True)\n", + " for species_name, species in modelCur.sc.items:\n", + " results[species_name] = d.XDMFFile(\n", + " modelCur.mpi_comm_world, f\"resultsSphere_{i:03d}/{species_name}.xdmf\"\n", + " )\n", + " results[species_name].parameters[\"flush_output\"] = True\n", + " results[species_name].write(modelCur.sc[species_name].u[\"u\"], modelCur.t)\n", + "\n", + " # Solve\n", + " while True:\n", + " # Solve the system\n", + " modelCur.monolithic_solve()\n", + " # Save results for post processing\n", + " for species_name, species in modelCur.sc.items:\n", + " results[species_name].write(modelCur.sc[species_name].u[\"u\"], modelCur.t)\n", + " # End if we've passed the final time\n", + " if modelCur.t >= modelCur.final_t:\n", + " break" + ] + } + ], + "metadata": { + "jupytext": { + "cell_metadata_filter": "-all", + "main_language": "python", + "notebook_metadata_filter": "-all" + }, + "kernelspec": { + "display_name": "Python 3", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.10.6" + }, + "vscode": { + "interpreter": { + "hash": "916dbcbb3f70747c44a77c7bcd40155683ae19c65e1c03b4aa3499c5328201f1" + } + } + }, + "nbformat": 4, + "nbformat_minor": 5 +} diff --git a/examples/example3/example3.ipynb b/examples/example3/example3.ipynb new file mode 100644 index 00000000..36649ca5 --- /dev/null +++ b/examples/example3/example3.ipynb @@ -0,0 +1,3367 @@ +{ + "cells": [ + { + "attachments": {}, + "cell_type": "markdown", + "id": "f65f18d7", + "metadata": {}, + "source": [ + "# Example for system in Cugno et al 2014\n", + "\n", + "Geometry is divided into 4 domains; two volumes and two surfaces:\n", + "- PM\n", + "- Cytosol\n", + "- ER membrane\n", + "- ER lumen\n", + "\n", + "This model has a single species, Ca2+, with prescribed time-dependent fluxes at the PM and the ERM.\n", + "\n", + "There are three reactions:\n", + "- Ca2+ influx at the PM\n", + "- Ca2+ removal in the cytosol (e.g. via buffering)\n", + "- Ca2+ flux into the ER \n", + "```" + ] + }, + { + "cell_type": "code", + "execution_count": 54, + "id": "cc398816", + "metadata": {}, + "outputs": [], + "source": [ + "import os\n", + "\n", + "import dolfin as d\n", + "import sympy as sym\n", + "import numpy as np\n", + "\n", + "from stubs import unit, config, common, mesh, model\n", + "from stubs.model_assembly import Compartment, Parameter, Reaction, Species" + ] + }, + { + "attachments": {}, + "cell_type": "markdown", + "id": "95b9d865", + "metadata": {}, + "source": [ + "First, we define the various units for the inputs" + ] + }, + { + "cell_type": "code", + "execution_count": 55, + "id": "4f4023cf", + "metadata": {}, + "outputs": [], + "source": [ + "# Aliases - base units\n", + "uM = unit.uM\n", + "um = unit.um\n", + "molecule = unit.molecule\n", + "sec = unit.sec\n", + "dimensionless = unit.dimensionless\n", + "# Aliases - units used in model\n", + "D_unit = um**2 / sec\n", + "flux_unit = uM * um / sec\n", + "vol_unit = uM\n", + "surf_unit = molecule / um**2" + ] + }, + { + "attachments": {}, + "cell_type": "markdown", + "id": "46582d26", + "metadata": {}, + "source": [ + "Next we generate the model." + ] + }, + { + "cell_type": "code", + "execution_count": 56, + "id": "09079b17", + "metadata": {}, + "outputs": [], + "source": [ + "def make_model(curRadius):\n", + " # =============================================================================================\n", + " # Species\n", + " # =============================================================================================\n", + " # name, initial concentration, concentration units, diffusion, diffusion units, compartment\n", + " Ca = Species(\"Ca\", 0.05, vol_unit, 1.0, D_unit, \"Cyto\")\n", + " CaER = Species(\"CaER\", 150.0, vol_unit, 6.27, D_unit, \"ER\") #effective D due to buffering\n", + " # note that CaER is not required; it is passively determined by the prescribed flux into the ER\n", + " # but for SMART to solve the system right now, it requires at least two species\n", + "\n", + " # =============================================================================================\n", + " # Compartments\n", + " # =============================================================================================\n", + " # name, topological dimensionality, length scale units, marker value\n", + " Cyto = Compartment(\"Cyto\", 3, um, 1)\n", + " PM = Compartment(\"PM\", 2, um, 10)\n", + " ER = Compartment(\"ER\", 3, um, 2)\n", + " ERm = Compartment(\"ERm\", 2, um, 12)\n", + "\n", + " # =============================================================================================\n", + " # Parameters and Reactions\n", + " # =============================================================================================\n", + " # Ca2+ influx at membrane\n", + " gamma, alpha, beta = 1140.0, .0025, .002\n", + " t = sym.symbols(\"t\")\n", + " pulsePM = gamma*(sym.exp(-t/alpha) - sym.exp(-t/beta))\n", + " #pulsePM_I = gamma*(-alpha*sym.exp(-t/alpha) + beta*sym.exp(-t/beta)) # integral for preintegration\n", + " j1pulse = Parameter.from_expression(\n", + " \"j1pulse\", pulsePM, flux_unit, use_preintegration=False#, preint_sym_expr=pulsePM_I\n", + " )\n", + " r1 = Reaction(\n", + " \"r1\",\n", + " [],\n", + " [\"Ca\"],\n", + " param_map={\"J\": \"j1pulse\"},\n", + " eqn_f_str=\"J\",\n", + " explicit_restriction_to_domain=\"PM\",\n", + " )\n", + " # Ca2+ flux into the ER\n", + " zeta, tER = 0.2, .02\n", + " estep = lambda t,t0,m: 1 / (1+sym.exp(m*(t0-t)))\n", + " pulseER = zeta*gamma*(sym.exp(-estep(t,tER,8000)*(t-tER)/alpha) - \n", + " sym.exp(-estep(t,tER,8000)*(t-tER)/beta))\n", + " #pulseER_I = zeta*gamma*(-alpha*sym.exp(-(t-tER)/alpha) + beta*sym.exp(-(t-tER)/beta)) # integral for preintegration\n", + " j2pulse = Parameter.from_expression(\n", + " \"j2pulse\", pulseER, flux_unit, use_preintegration=False#, preint_sym_expr=pulseER_I\n", + " )\n", + " r2 = Reaction(\n", + " \"r2\",\n", + " [\"CaER\"],\n", + " [\"Ca\"],\n", + " param_map={\"J\": \"j2pulse\"},\n", + " eqn_f_str=\"J\",\n", + " explicit_restriction_to_domain=\"ERm\",\n", + " )\n", + " # consumption of Ca in the cytosol\n", + " tau = Parameter(\"tau\", 0.05, sec)\n", + " r3 = Reaction(\"r3\", [\"Ca\"], [], param_map={\"tau\": \"tau\"},\n", + " eqn_f_str=\"Ca/tau\", species_map={\"Ca\": \"Ca\"})\n", + " # scale fluxes into the ER to implicitly account for buffers\n", + " #xi = 0.0227272727\n", + " #r2.flux_scaling = {\"CaER\": xi}\n", + " #r2.__post_init__()\n", + "\n", + " # =============================================================================================\n", + " # Gather all parameters, species, compartments and reactions\n", + " # =============================================================================================\n", + " return common.sbmodel_from_locals(locals().values())" + ] + }, + { + "attachments": {}, + "cell_type": "markdown", + "id": "15c35d39", + "metadata": {}, + "source": [ + "We load the model generated above, and load in the mesh we will use in this example." + ] + }, + { + "cell_type": "code", + "execution_count": 57, + "id": "fe56e162", + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "\u001b[32m[2023-02-13 time=19:45:25] Time-dependent parameter j1pulse evaluated from expression.\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=19:45:25] Time-dependent parameter j2pulse evaluated from expression.\u001b[0m \u001b[97m\u001b[0m\n", + "Info : Meshing 1D...\n", + "Info : [ 20%] Meshing curve 2 (Circle)\n", + "Info : [ 70%] Meshing curve 5 (Circle)\n", + "Info : Done meshing 1D (Wall 0.00337151s, CPU 0s)\n", + "Info : Meshing 2D...\n", + "Info : [ 0%] Meshing surface 1 (Sphere, Frontal-Delaunay)\n", + "Info : [ 50%] Meshing surface 2 (Sphere, Frontal-Delaunay)\n", + "Info : Done meshing 2D (Wall 0.831835s, CPU 0.820083s)\n", + "Info : Meshing 3D...\n", + "Info : 3D Meshing 2 volumes with 1 connected component\n", + "Info : Tetrahedrizing 6468 nodes...\n", + "Info : Done tetrahedrizing 6476 nodes (Wall 0.115483s, CPU 0.115602s)\n", + "Info : Reconstructing mesh...\n", + "Info : - Creating surface mesh\n", + "Info : - Identifying boundary edges\n", + "Info : - Recovering boundary\n", + "Info : Done reconstructing mesh (Wall 0.4299s, CPU 0.415655s)\n", + "Info : Found volume 4\n", + "Info : Found volume 3\n", + "Info : It. 0 - 0 nodes created - worst tet radius 5.48519 (nodes removed 0 0)\n", + "Info : It. 500 - 499 nodes created - worst tet radius 2.3463 (nodes removed 0 1)\n", + "Info : It. 1000 - 999 nodes created - worst tet radius 1.86182 (nodes removed 0 1)\n", + "Info : It. 1500 - 1499 nodes created - worst tet radius 1.64453 (nodes removed 0 1)\n", + "Info : It. 2000 - 1999 nodes created - worst tet radius 1.52275 (nodes removed 0 1)\n", + "Info : It. 2500 - 2499 nodes created - worst tet radius 1.42371 (nodes removed 0 1)\n", + "Info : It. 3000 - 2998 nodes created - worst tet radius 1.34482 (nodes removed 0 2)\n", + "Info : It. 3500 - 3498 nodes created - worst tet radius 1.27281 (nodes removed 0 2)\n", + "Info : It. 4000 - 3998 nodes created - worst tet radius 1.2203 (nodes removed 0 2)\n", + "Info : It. 4500 - 4498 nodes created - worst tet radius 1.17948 (nodes removed 0 2)\n", + "Info : It. 5000 - 4998 nodes created - worst tet radius 1.14129 (nodes removed 0 2)\n", + "Info : It. 5500 - 5498 nodes created - worst tet radius 1.10851 (nodes removed 0 2)\n", + "Info : It. 6000 - 5998 nodes created - worst tet radius 1.08055 (nodes removed 0 2)\n", + "Info : It. 6500 - 6498 nodes created - worst tet radius 1.05518 (nodes removed 0 2)\n", + "Info : It. 7000 - 6998 nodes created - worst tet radius 1.03222 (nodes removed 0 2)\n", + "Info : It. 7500 - 7498 nodes created - worst tet radius 1.01154 (nodes removed 0 2)\n", + "Info : 3D refinement terminated (14258 nodes total):\n", + "Info : - 1 Delaunay cavities modified for star shapeness\n", + "Info : - 2 nodes could not be inserted\n", + "Info : - 70557 tetrahedra created in 1.67495 sec. (42124 tets/s)\n", + "Info : Done meshing 3D (Wall 2.66256s, CPU 2.65898s)\n", + "Info : Optimizing mesh...\n", + "Info : Optimizing volume 3\n", + "Info : Optimization starts (volume = 0.0573235) with worst = 0.00208736 / average = 0.76422:\n", + "Info : 0.00 < quality < 0.10 : 158 elements\n", + "Info : 0.10 < quality < 0.20 : 492 elements\n", + "Info : 0.20 < quality < 0.30 : 770 elements\n", + "Info : 0.30 < quality < 0.40 : 1342 elements\n", + "Info : 0.40 < quality < 0.50 : 2065 elements\n", + "Info : 0.50 < quality < 0.60 : 4084 elements\n", + "Info : 0.60 < quality < 0.70 : 7485 elements\n", + "Info : 0.70 < quality < 0.80 : 17504 elements\n", + "Info : 0.80 < quality < 0.90 : 23103 elements\n", + "Info : 0.90 < quality < 1.00 : 10839 elements\n", + "Info : 1399 edge swaps, 36 node relocations (volume = 0.0573235): worst = 0.126542 / average = 0.777102 (Wall 0.07669s, CPU 0.07849s)\n", + "Info : 1414 edge swaps, 36 node relocations (volume = 0.0573235): worst = 0.16083 / average = 0.777241 (Wall 0.0987523s, CPU 0.100891s)\n", + "Info : No ill-shaped tets in the mesh :-)\n", + "Info : 0.00 < quality < 0.10 : 0 elements\n", + "Info : 0.10 < quality < 0.20 : 1 elements\n", + "Info : 0.20 < quality < 0.30 : 1 elements\n", + "Info : 0.30 < quality < 0.40 : 1335 elements\n", + "Info : 0.40 < quality < 0.50 : 1950 elements\n", + "Info : 0.50 < quality < 0.60 : 4086 elements\n", + "Info : 0.60 < quality < 0.70 : 7407 elements\n", + "Info : 0.70 < quality < 0.80 : 17552 elements\n", + "Info : 0.80 < quality < 0.90 : 23453 elements\n", + "Info : 0.90 < quality < 1.00 : 10774 elements\n", + "Info : Optimizing volume 4\n", + "Info : Optimization starts (volume = 0.00806657) with worst = 0.0406542 / average = 0.762996:\n", + "Info : 0.00 < quality < 0.10 : 7 elements\n", + "Info : 0.10 < quality < 0.20 : 21 elements\n", + "Info : 0.20 < quality < 0.30 : 34 elements\n", + "Info : 0.30 < quality < 0.40 : 45 elements\n", + "Info : 0.40 < quality < 0.50 : 92 elements\n", + "Info : 0.50 < quality < 0.60 : 123 elements\n", + "Info : 0.60 < quality < 0.70 : 349 elements\n", + "Info : 0.70 < quality < 0.80 : 675 elements\n", + "Info : 0.80 < quality < 0.90 : 971 elements\n", + "Info : 0.90 < quality < 1.00 : 398 elements\n", + "Info : 61 edge swaps, 0 node relocations (volume = 0.00806657): worst = 0.311173 / average = 0.776773 (Wall 0.00189792s, CPU 0.002187s)\n", + "Info : No ill-shaped tets in the mesh :-)\n", + "Info : 0.00 < quality < 0.10 : 0 elements\n", + "Info : 0.10 < quality < 0.20 : 0 elements\n", + "Info : 0.20 < quality < 0.30 : 0 elements\n", + "Info : 0.30 < quality < 0.40 : 46 elements\n", + "Info : 0.40 < quality < 0.50 : 89 elements\n", + "Info : 0.50 < quality < 0.60 : 122 elements\n", + "Info : 0.60 < quality < 0.70 : 352 elements\n", + "Info : 0.70 < quality < 0.80 : 672 elements\n", + "Info : 0.80 < quality < 0.90 : 979 elements\n", + "Info : 0.90 < quality < 1.00 : 401 elements\n", + "Info : Done optimizing mesh (Wall 0.51939s, CPU 0.323786s)\n", + "Info : 14258 nodes 82231 elements\n", + "Info : Writing 'twoSpheres.msh'...\n", + "Info : Done writing 'twoSpheres.msh'\n", + "\n", + "HDF5 mesh, \"parent_mesh\", successfully loaded from file: mesh_000/DemoSphere.h5!\n", + "['FFC', 'UFL', 'djitso', 'dolfin']\n", + "['FFC', 'UFL', 'djitso', 'dolfin']\n", + "\n", + "\u001b[36m======================================================================================================================\u001b[0m\n", + "\u001b[36m========================\u001b[0m \u001b[35m[2023-02-13 time=19:45:31] Checking validity of model (step 1 of ZZ)\u001b[0m \u001b[36m========================\u001b[0m\n", + "\u001b[36m======================================================================================================================\u001b[0m\n", + "\u001b[32m[2023-02-13 time=19:45:31] Check that mesh/compartment dimensionalities match\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=19:45:31] Checking for namespace conflicts\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[36m=====================\u001b[0m \u001b[35m[2023-02-13 time=19:45:31] Step 1 of initialization completed successfully!\u001b[0m \u001b[36m=====================\u001b[0m\n", + "\n", + "\u001b[36m=======================================================================================================================\u001b[0m\n", + "\u001b[36m=================\u001b[0m \u001b[35m[2023-02-13 time=19:45:31] Cross-Container Dependent Initializations (step 2 of ZZ)\u001b[0m \u001b[36m=================\u001b[0m\n", + "\u001b[36m=======================================================================================================================\u001b[0m\n", + "\u001b[32m[2023-02-13 time=19:45:31] Turning reactions into unsigned symbolic flux strings\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=19:45:31] Make sure all reactions have parameters/species defined\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=19:45:31] Linking parameters, species, and compartments to reactions\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=19:45:31] Checking for unused parameters, species, or compartments\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=19:45:31] Linking compartments and compartment dimensionality to species\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=19:45:31] Linking species to compartments\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=19:45:31] Getting indices for species for each compartment\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[36m=====================\u001b[0m \u001b[35m[2023-02-13 time=19:45:31] Step 2 of initialization completed successfully!\u001b[0m \u001b[36m=====================\u001b[0m\n", + "\n", + "\u001b[36m======================================================================================================================\u001b[0m\n", + "\u001b[36m=======================\u001b[0m \u001b[35m[2023-02-13 time=19:45:31] Mesh-related Initializations (step 3 of ZZ)\u001b[0m \u001b[36m=======================\u001b[0m\n", + "\u001b[36m======================================================================================================================\u001b[0m\n", + "\u001b[32m[2023-02-13 time=19:45:31] Defining child meshes\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=19:45:31] Defining parent mesh functions\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=19:45:31] Extracting submeshes using MeshView\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=19:45:31] Building MeshView mappings between all child mesh pairs\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[35m!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\u001b[0m\n", + "\u001b[35m!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\u001b[0m\n", + "\u001b[35m!!!!!!!!!!!!!!!!!!!!!!!!!\u001b[0m \u001b[31m[2023-02-13 time=19:45:32] DEBUGGING 3_5, 3_6 (mesh intersections)\u001b[0m \u001b[35m!!!!!!!!!!!!!!!!!!!!!!!!!\u001b[0m\n", + "\u001b[35m!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\u001b[0m\n", + "\u001b[35m!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\u001b[0m\n", + "\n", + "\u001b[32m[2023-02-13 time=19:45:32] Getting integration measures for parent mesh and child meshes\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[97m.....................\u001b[0m \u001b[35m[2023-02-13 time=19:45:32] Step 3 of initialization completed successfully!\u001b[0m \u001b[97m.....................\u001b[0m\n", + "\n", + "\u001b[36m======================================================================================================================\u001b[0m\n", + "\u001b[36m==========================\u001b[0m \u001b[35m[2023-02-13 time=19:45:32] Dolfin Initializations (step 4 of ZZ)\u001b[0m \u001b[36m==========================\u001b[0m\n", + "\u001b[36m======================================================================================================================\u001b[0m\n", + "\u001b[32m[2023-02-13 time=19:45:32] Defining dolfin function spaces for compartments\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=19:45:32] Defining function space for PM (dim: 2, species: 0, dofs: 0)\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=19:45:32] Defining function space for Cyto (dim: 3, species: 1, dofs: 0)\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=19:45:32] Defining dolfin functions\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=19:45:32] Extracting subfunctions/function spaces/dofmap for each species\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=19:45:32] Naming functions and subfunctions\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=19:45:32] Checking that dolfin functions were created correctly\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=19:45:32] Set function values to initial conditions\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m======================================================================================================================\u001b[0m\n", + "\u001b[36m================\u001b[0m \u001b[35m[2023-02-13 time=19:45:32] Dolfin fluxes, forms, and problems+solvers (step 5 of ZZ)\u001b[0m \u001b[36m================\u001b[0m\n", + "\u001b[36m======================================================================================================================\u001b[0m\n", + "\u001b[32m[2023-02-13 time=19:45:32] Convert reactions to flux objects\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=19:45:32] Getting fluxes for reaction r3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=19:45:32] Getting fluxes for reaction r2\u001b[0m \u001b[97m\u001b[0m\n", + "DEBUGGING INTEGRATION MEASURE (only fully defined domains are enabled for now)\n", + "\u001b[32m[2023-02-13 time=19:45:32] Getting fluxes for reaction r1\u001b[0m \u001b[97m\u001b[0m\n", + "DEBUGGING INTEGRATION MEASURE (only fully defined domains are enabled for now)\n", + "\u001b[32m[2023-02-13 time=19:45:32] Creating functional forms\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=19:45:32] Compartment ERm has no diffusive forms.\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=19:45:32] Compartment PM has no diffusive forms.\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m=======================================================================================================================\u001b[0m\n", + "\u001b[36m==============================\u001b[0m \u001b[35m[2023-02-13 time=19:45:32] Model finished initialization!\u001b[0m \u001b[36m==============================\u001b[0m\n", + "\u001b[36m=======================================================================================================================\u001b[0m\n", + "╒═════════╤══════════════════╤═════════════════════╤══════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════╤═════════╤═════════╕\n", + "│ │ quantity │ is_time_dependent │ sym_expr │ notes │ group │\n", + "╞═════════╪══════════════════╪═════════════════════╪══════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════╪═════════╪═════════╡\n", + "│ tau │ 5.00×10⁻² s │ False │ │ │ │\n", + "├─────────┼──────────────────┼─────────────────────┼──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┼─────────┼─────────┤\n", + "│ j2pulse │ 0.00×10⁰ µM·µm/s │ True │ -228.0*exp(-500.0*(t - 0.02)/(1 + 3.06984964064424e+69*exp(-8000*t))) + 228.0*exp(-400.0*(t - 0.02)/(1 + 3.06984964064424e+69*exp(-8000*t))) │ │ │\n", + "├─────────┼──────────────────┼─────────────────────┼──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┼─────────┼─────────┤\n", + "│ j1pulse │ 0.00×10⁰ µM·µm/s │ True │ -1140.0*exp(-500.0*t) + 1140.0*exp(-400.0*t) │ │ │\n", + "╘═════════╧══════════════════╧═════════════════════╧══════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════╧═════════╧═════════╛\n", + "╒════╤════════════════════╤═════════════╤════════════════╕\n", + "│ │ compartment_name │ dof_index │ Diffusion │\n", + "╞════╪════════════════════╪═════════════╪════════════════╡\n", + "│ Ca │ Cyto │ 0 │ 1.00×10⁰ µm²/s │\n", + "╘════╧════════════════════╧═════════════╧════════════════╛\n", + "╒══════╤═══════════╤══════════════════╤═══════════════╤════════════════╤════════════╤══════════════════╤═════════════╤═══════════════╤═══════════════╕\n", + "│ │ mesh_id │ dimensionality │ num_species │ num_vertices │ num_dofs │ num_dofs_local │ num_cells │ cell_marker │ nvolume │\n", + "╞══════╪═══════════╪══════════════════╪═══════════════╪════════════════╪════════════╪══════════════════╪═════════════╪═══════════════╪═══════════════╡\n", + "│ ERm │ 40521 │ 2 │ 0 │ 400 │ 0 │ 0 │ 796 │ 12 │ 1.95×10⁻¹ µm² │\n", + "├──────┼───────────┼──────────────────┼───────────────┼────────────────┼────────────┼──────────────────┼─────────────┼───────────────┼───────────────┤\n", + "│ PM │ 40527 │ 2 │ 0 │ 6068 │ 6068 │ 6068 │ 12132 │ 10 │ 7.85×10⁻¹ µm² │\n", + "├──────┼───────────┼──────────────────┼───────────────┼────────────────┼────────────┼──────────────────┼─────────────┼───────────────┼───────────────┤\n", + "│ Cyto │ 40533 │ 3 │ 1 │ 14008 │ 14008 │ 14008 │ 66559 │ 1 │ 5.73×10⁻² µm³ │\n", + "╘══════╧═══════════╧══════════════════╧═══════════════╧════════════════╧════════════╧══════════════════╧═════════════╧═══════════════╧═══════════════╛\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/usr/lib/python3/dist-packages/pandas/core/dtypes/cast.py:1784: UnitStrippedWarning: The unit of the quantity is stripped when downcasting to ndarray.\n", + " result[:] = values\n", + "/root/shared/gitrepos/stubs-dev/stubs/model_assembly.py:188: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", + " df = df.append(\n", + "/usr/lib/python3/dist-packages/pandas/core/dtypes/cast.py:1784: UnitStrippedWarning: The unit of the quantity is stripped when downcasting to ndarray.\n", + " result[:] = values\n", + "/root/shared/gitrepos/stubs-dev/stubs/model_assembly.py:188: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", + " df = df.append(\n", + "/usr/lib/python3/dist-packages/pandas/core/dtypes/cast.py:1784: UnitStrippedWarning: The unit of the quantity is stripped when downcasting to ndarray.\n", + " result[:] = values\n", + "/root/shared/gitrepos/stubs-dev/stubs/model_assembly.py:188: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", + " df = df.append(\n", + "/usr/lib/python3/dist-packages/pandas/core/dtypes/cast.py:1784: UnitStrippedWarning: The unit of the quantity is stripped when downcasting to ndarray.\n", + " result[:] = values\n", + "/root/shared/gitrepos/stubs-dev/stubs/model_assembly.py:188: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", + " df = df.append(\n", + "/usr/lib/python3/dist-packages/pandas/core/dtypes/cast.py:1784: UnitStrippedWarning: The unit of the quantity is stripped when downcasting to ndarray.\n", + " result[:] = values\n", + "/root/shared/gitrepos/stubs-dev/stubs/model_assembly.py:188: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", + " df = df.append(\n", + "/usr/lib/python3/dist-packages/pandas/core/dtypes/cast.py:1784: UnitStrippedWarning: The unit of the quantity is stripped when downcasting to ndarray.\n", + " result[:] = values\n", + "/root/shared/gitrepos/stubs-dev/stubs/model_assembly.py:188: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", + " df = df.append(\n", + "/usr/lib/python3/dist-packages/pandas/core/dtypes/cast.py:1784: UnitStrippedWarning: The unit of the quantity is stripped when downcasting to ndarray.\n", + " result[:] = values\n", + "/root/shared/gitrepos/stubs-dev/stubs/model_assembly.py:188: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", + " df = df.append(\n", + "/root/shared/gitrepos/stubs-dev/stubs/model.py:2405: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", + " df = df.append(tempseries, ignore_index=True)\n", + "/root/shared/gitrepos/stubs-dev/stubs/model.py:2412: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", + " df = df.append(tempseries, ignore_index=True)\n", + "/root/shared/gitrepos/stubs-dev/stubs/model.py:2412: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", + " df = df.append(tempseries, ignore_index=True)\n", + "/root/shared/gitrepos/stubs-dev/stubs/model.py:2412: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", + " df = df.append(tempseries, ignore_index=True)\n", + "/root/shared/gitrepos/stubs-dev/stubs/model_assembly.py:188: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", + " df = df.append(\n", + "/root/shared/gitrepos/stubs-dev/stubs/model_assembly.py:188: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", + " df = df.append(\n", + "/root/shared/gitrepos/stubs-dev/stubs/model_assembly.py:188: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", + " df = df.append(\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "╒════╤═════════════╤═══════╤══════════════════╤═════════════╤══════════════╤════════════════╕\n", + "│ │ name │ id │ dimensionality │ num_cells │ num_facets │ num_vertices │\n", + "╞════╪═════════════╪═══════╪══════════════════╪═════════════╪══════════════╪════════════════╡\n", + "│ 0 │ parent_mesh │ 40507 │ 3 │ 69220 │ 144506 │ 14258 │\n", + "├────┼─────────────┼───────┼──────────────────┼─────────────┼──────────────┼────────────────┤\n", + "│ 1 │ ERm │ 40521 │ 2 │ 796 │ 0 │ 400 │\n", + "├────┼─────────────┼───────┼──────────────────┼─────────────┼──────────────┼────────────────┤\n", + "│ 2 │ PM │ 40527 │ 2 │ 12132 │ 18198 │ 6068 │\n", + "├────┼─────────────┼───────┼──────────────────┼─────────────┼──────────────┼────────────────┤\n", + "│ 3 │ Cyto │ 40533 │ 3 │ 66559 │ 139582 │ 14008 │\n", + "╘════╧═════════════╧═══════╧══════════════════╧═════════════╧══════════════╧════════════════╛\n", + "╒════╤════════╤════════╤═════════════╤═════════════╕\n", + "│ │ lhs │ rhs │ eqn_f_str │ eqn_r_str │\n", + "╞════╪════════╪════════╪═════════════╪═════════════╡\n", + "│ r3 │ ['Ca'] │ [] │ Ca/tau │ │\n", + "├────┼────────┼────────┼─────────────┼─────────────┤\n", + "│ r2 │ [] │ ['Ca'] │ j2pulse │ │\n", + "├────┼────────┼────────┼─────────────┼─────────────┤\n", + "│ r1 │ [] │ ['Ca'] │ j1pulse │ │\n", + "╘════╧════════╧════════╧═════════════╧═════════════╛\n", + "\u001b[32m[2023-02-13 time=19:45:32] Formulating problem as F(u;v) == 0 for newton iterations\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[35m!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\u001b[0m\n", + "\u001b[35m!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\u001b[0m\n", + "\u001b[35m!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\u001b[0m \u001b[31m[2023-02-13 time=19:45:32] F0 = F[ERm]) is empty\u001b[0m \u001b[35m!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\u001b[0m\n", + "\u001b[35m!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\u001b[0m\n", + "\u001b[35m!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\u001b[0m\n", + "\n" + ] + }, + { + "ename": "AssertionError", + "evalue": "", + "output_type": "error", + "traceback": [ + "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m", + "\u001b[0;31mAssertionError\u001b[0m Traceback (most recent call last)", + "Cell \u001b[0;32mIn[57], line 33\u001b[0m\n\u001b[1;32m 22\u001b[0m configCur\u001b[39m.\u001b[39msolver\u001b[39m.\u001b[39mupdate(\n\u001b[1;32m 23\u001b[0m {\n\u001b[1;32m 24\u001b[0m \u001b[39m\"\u001b[39m\u001b[39mfinal_t\u001b[39m\u001b[39m\"\u001b[39m: \u001b[39m0.1\u001b[39m,\n\u001b[0;32m (...)\u001b[0m\n\u001b[1;32m 29\u001b[0m }\n\u001b[1;32m 30\u001b[0m )\n\u001b[1;32m 32\u001b[0m modelCur\u001b[39m.\u001b[39minitialize(initialize_solver\u001b[39m=\u001b[39m\u001b[39mFalse\u001b[39;00m)\n\u001b[0;32m---> 33\u001b[0m modelCur\u001b[39m.\u001b[39;49minitialize_discrete_variational_problem_and_solver()\n", + "File \u001b[0;32m~/shared/gitrepos/stubs-dev/stubs/model.py:1160\u001b[0m, in \u001b[0;36mModel.initialize_discrete_variational_problem_and_solver\u001b[0;34m(self)\u001b[0m\n\u001b[1;32m 1157\u001b[0m \u001b[39mself\u001b[39m\u001b[39m.\u001b[39mFblocks_all \u001b[39m=\u001b[39m \u001b[39mself\u001b[39m\u001b[39m.\u001b[39mget_block_F(\u001b[39mself\u001b[39m\u001b[39m.\u001b[39mFsum_all, u)\n\u001b[1;32m 1158\u001b[0m \u001b[39m# self.Jblocks_linear = None\u001b[39;00m\n\u001b[1;32m 1159\u001b[0m \u001b[39m# self.Jblocks_nonlinear = self.get_block_J(self.Fsum_all, u)\u001b[39;00m\n\u001b[0;32m-> 1160\u001b[0m \u001b[39mself\u001b[39m\u001b[39m.\u001b[39mJblocks_all \u001b[39m=\u001b[39m \u001b[39mself\u001b[39;49m\u001b[39m.\u001b[39;49mget_block_J(\u001b[39mself\u001b[39;49m\u001b[39m.\u001b[39;49mFsum_all, u)\n\u001b[1;32m 1162\u001b[0m \u001b[39m# Print the residuals per compartment\u001b[39;00m\n\u001b[1;32m 1163\u001b[0m \u001b[39mfor\u001b[39;00m compartment \u001b[39min\u001b[39;00m \u001b[39mself\u001b[39m\u001b[39m.\u001b[39m_active_compartments:\n", + "File \u001b[0;32m~/shared/gitrepos/stubs-dev/stubs/model.py:1418\u001b[0m, in \u001b[0;36mModel.get_block_J\u001b[0;34m(self, Fsum, u)\u001b[0m\n\u001b[1;32m 1415\u001b[0m J\u001b[39m.\u001b[39mappend(dFdu)\n\u001b[1;32m 1417\u001b[0m \u001b[39m# Check number of blocks in the residual and solution are coherent\u001b[39;00m\n\u001b[0;32m-> 1418\u001b[0m \u001b[39massert\u001b[39;00m \u001b[39mlen\u001b[39m(J) \u001b[39m==\u001b[39m \u001b[39mlen\u001b[39m(u) \u001b[39m*\u001b[39m \u001b[39mlen\u001b[39m(u)\n\u001b[1;32m 1420\u001b[0m \u001b[39m# Decompose J blocks into subforms based on domain of integration\u001b[39;00m\n\u001b[1;32m 1421\u001b[0m Jlist \u001b[39m=\u001b[39m \u001b[39mlist\u001b[39m()\n", + "\u001b[0;31mAssertionError\u001b[0m: " + ] + } + ], + "source": [ + "curRadius = 0.25 # dendritic spine radius\n", + "i = 0\n", + "pc, sc, cc, rc = make_model(curRadius)\n", + "\n", + "# =============================================================================================\n", + "# Create/load in mesh\n", + "# =============================================================================================\n", + "# Base mesh\n", + "domain, facet_markers, cell_markers = common.DemoSpheresMesh(curRadius, curRadius/2) #0 in second argument corresponds to no ER\n", + "# Write mesh and meshfunctions to file\n", + "os.makedirs(f\"mesh_{i:03d}\", exist_ok=True)\n", + "common.write_mesh(domain, facet_markers, cell_markers, filename=f\"mesh_{i:03d}/DemoSphere\")\n", + "\n", + "# # Define solvers\n", + "parent_mesh = mesh.ParentMesh(\n", + " mesh_filename=f\"mesh_{i:03d}/DemoSphere.h5\",\n", + " mesh_filetype=\"hdf5\",\n", + " name=\"parent_mesh\",\n", + ")\n", + "configCur = config.Config()\n", + "modelCur = model.Model(pc, sc, cc, rc, configCur, parent_mesh)\n", + "configCur.solver.update(\n", + " {\n", + " \"final_t\": 0.1,\n", + " \"initial_dt\": 0.001,\n", + " \"time_precision\": 6,\n", + " \"use_snes\": True,\n", + " \"print_assembly\": False,\n", + " }\n", + ")\n", + "\n", + "modelCur.initialize(initialize_solver=False)\n", + "modelCur.initialize_discrete_variational_problem_and_solver()\n" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "b54d28ca", + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-13 time=14:32:48] Beginning time-step 1 [time=0.001000, dt=0.001000]\u001b[0m \u001b[36m....................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:48] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:48] snes residual assemble (iter 1) finished in 0.059772 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:48] snes jacobian assemble (iter 1) finished in 0.066319 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:48] snes residual assemble (iter 2) finished in 0.059418 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:49] snes jacobian assemble (iter 2) finished in 0.071540 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:49] snes residual assemble (iter 3) finished in 0.054445 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-13 time=14:32:49] Completed time-step 1 [time=0.001000, dt=0.001000]\u001b[0m \u001b[36m....................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:49] snes initialize zero matrices finished in 0.000473 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:49] snes jacobian assemble finished in 0.137860 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:49] snes residual assemble finished in 0.173636 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:49] snes total assemble finished in 0.311970 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:49] snes total solve finished in 0.310323 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:49] snes all finished in 0.622294 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:49] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:49] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:49] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:49] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:49] KSP residual norm: 1.2218978415691827e-11\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:49] Total time step finished in 0.625170 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-13 time=14:32:49] Beginning time-step 2 [time=0.002000, dt=0.001000]\u001b[0m \u001b[36m....................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:49] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:49] snes residual assemble (iter 1) finished in 0.050963 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:49] snes jacobian assemble (iter 1) finished in 0.067900 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:49] snes residual assemble (iter 2) finished in 0.072739 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:49] snes jacobian assemble (iter 2) finished in 0.082965 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:49] snes residual assemble (iter 3) finished in 0.063527 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-13 time=14:32:49] Completed time-step 2 [time=0.002000, dt=0.001000]\u001b[0m \u001b[36m....................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:49] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:49] snes jacobian assemble finished in 0.150866 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:49] snes residual assemble finished in 0.187229 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:49] snes total assemble finished in 0.338095 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:49] snes total solve finished in 0.316626 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:49] snes all finished in 0.654721 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:49] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:49] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:49] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:49] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:49] KSP residual norm: 6.3714322884177025e-12\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:49] Total time step finished in 0.658272 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-13 time=14:32:49] Beginning time-step 3 [time=0.003000, dt=0.001000]\u001b[0m \u001b[36m....................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:49] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:49] snes residual assemble (iter 1) finished in 0.067750 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:50] snes jacobian assemble (iter 1) finished in 0.077509 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:50] snes residual assemble (iter 2) finished in 0.057452 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:50] snes jacobian assemble (iter 2) finished in 0.069214 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:50] snes residual assemble (iter 3) finished in 0.055300 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-13 time=14:32:50] Completed time-step 3 [time=0.003000, dt=0.001000]\u001b[0m \u001b[36m....................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:50] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:50] snes jacobian assemble finished in 0.146723 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:50] snes residual assemble finished in 0.180504 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:50] snes total assemble finished in 0.327228 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:50] snes total solve finished in 0.303233 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:50] snes all finished in 0.630461 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:50] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:50] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:50] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:50] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:50] KSP residual norm: 2.7218925404485678e-12\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:50] Total time step finished in 0.633907 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-13 time=14:32:50] Beginning time-step 4 [time=0.004000, dt=0.001000]\u001b[0m \u001b[36m....................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:50] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:50] snes residual assemble (iter 1) finished in 0.054410 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:50] snes jacobian assemble (iter 1) finished in 0.071708 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:50] snes residual assemble (iter 2) finished in 0.062433 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:50] snes jacobian assemble (iter 2) finished in 0.070647 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:51] snes residual assemble (iter 3) finished in 0.054426 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-13 time=14:32:51] Completed time-step 4 [time=0.004000, dt=0.001000]\u001b[0m \u001b[36m....................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:51] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:51] snes jacobian assemble finished in 0.142356 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:51] snes residual assemble finished in 0.171270 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:51] snes total assemble finished in 0.313626 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:51] snes total solve finished in 0.335692 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:51] snes all finished in 0.649319 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:51] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:51] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:51] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:51] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:51] KSP residual norm: 2.5100556975564675e-12\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:51] Total time step finished in 0.652648 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-13 time=14:32:51] Beginning time-step 5 [time=0.005000, dt=0.001000]\u001b[0m \u001b[36m....................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:51] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:51] snes residual assemble (iter 1) finished in 0.054267 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:51] snes jacobian assemble (iter 1) finished in 0.066571 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:51] snes residual assemble (iter 2) finished in 0.052609 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:51] snes jacobian assemble (iter 2) finished in 0.069720 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:51] snes residual assemble (iter 3) finished in 0.054844 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-13 time=14:32:51] Completed time-step 5 [time=0.005000, dt=0.001000]\u001b[0m \u001b[36m....................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:51] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:51] snes jacobian assemble finished in 0.136291 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:51] snes residual assemble finished in 0.161722 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:51] snes total assemble finished in 0.298014 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:51] snes total solve finished in 0.301622 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:51] snes all finished in 0.599637 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:51] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:51] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:51] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:51] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:51] KSP residual norm: 3.610438587615812e-12\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:51] Total time step finished in 0.603069 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-13 time=14:32:51] Beginning time-step 6 [time=0.006000, dt=0.001000]\u001b[0m \u001b[36m....................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:51] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:51] snes residual assemble (iter 1) finished in 0.075006 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:52] snes jacobian assemble (iter 1) finished in 0.097967 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:52] snes residual assemble (iter 2) finished in 0.056095 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:52] snes jacobian assemble (iter 2) finished in 0.079630 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:52] snes residual assemble (iter 3) finished in 0.058109 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-13 time=14:32:52] Completed time-step 6 [time=0.006000, dt=0.001000]\u001b[0m \u001b[36m....................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:52] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:52] snes jacobian assemble finished in 0.177598 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:52] snes residual assemble finished in 0.189212 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:52] snes total assemble finished in 0.366810 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:52] snes total solve finished in 0.324035 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:52] snes all finished in 0.690846 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:52] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:52] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:52] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:52] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:52] KSP residual norm: 5.241454129759519e-12\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:52] Total time step finished in 0.695425 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-13 time=14:32:52] Beginning time-step 7 [time=0.007000, dt=0.001000]\u001b[0m \u001b[36m....................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:52] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:52] snes residual assemble (iter 1) finished in 0.052379 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:52] snes jacobian assemble (iter 1) finished in 0.069116 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:52] snes residual assemble (iter 2) finished in 0.058640 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:52] snes jacobian assemble (iter 2) finished in 0.074788 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:53] snes residual assemble (iter 3) finished in 0.055708 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-13 time=14:32:53] Completed time-step 7 [time=0.007000, dt=0.001000]\u001b[0m \u001b[36m....................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:53] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:53] snes jacobian assemble finished in 0.143904 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:53] snes residual assemble finished in 0.166728 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:53] snes total assemble finished in 0.310632 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:53] snes total solve finished in 0.317872 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:53] snes all finished in 0.628505 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:53] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:53] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:53] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:53] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:53] KSP residual norm: 4.295835097578405e-12\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:53] Total time step finished in 0.631309 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-13 time=14:32:53] Beginning time-step 8 [time=0.008000, dt=0.001000]\u001b[0m \u001b[36m....................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:53] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:53] snes residual assemble (iter 1) finished in 0.056281 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:53] snes jacobian assemble (iter 1) finished in 0.085721 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:53] snes residual assemble (iter 2) finished in 0.056571 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:53] snes jacobian assemble (iter 2) finished in 0.068474 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:53] snes residual assemble (iter 3) finished in 0.052991 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-13 time=14:32:53] Completed time-step 8 [time=0.008000, dt=0.001000]\u001b[0m \u001b[36m....................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:53] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:53] snes jacobian assemble finished in 0.154195 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:53] snes residual assemble finished in 0.165844 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:53] snes total assemble finished in 0.320040 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:53] snes total solve finished in 0.298527 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:53] snes all finished in 0.618567 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:53] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:53] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:53] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:53] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:53] KSP residual norm: 3.2483074634818465e-12\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:53] Total time step finished in 0.621610 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-13 time=14:32:53] Beginning time-step 9 [time=0.009000, dt=0.001000]\u001b[0m \u001b[36m....................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:53] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:53] snes residual assemble (iter 1) finished in 0.052833 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:53] snes jacobian assemble (iter 1) finished in 0.068326 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:54] snes residual assemble (iter 2) finished in 0.058102 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:54] snes jacobian assemble (iter 2) finished in 0.067615 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:54] snes residual assemble (iter 3) finished in 0.064223 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m....................\u001b[0m \u001b[31m[2023-02-13 time=14:32:54] Completed time-step 9 [time=0.009000, dt=0.001000]\u001b[0m \u001b[36m....................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:54] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:54] snes jacobian assemble finished in 0.135942 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:54] snes residual assemble finished in 0.175159 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:54] snes total assemble finished in 0.311101 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:54] snes total solve finished in 0.316784 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:54] snes all finished in 0.627886 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:54] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:54] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:54] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:54] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:54] KSP residual norm: 2.111211862338033e-12\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:54] Total time step finished in 0.630899 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:32:54] Beginning time-step 10 [time=0.010000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:54] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:54] snes residual assemble (iter 1) finished in 0.056177 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:54] snes jacobian assemble (iter 1) finished in 0.068384 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:54] snes residual assemble (iter 2) finished in 0.067306 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:54] snes jacobian assemble (iter 2) finished in 0.067001 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:55] snes residual assemble (iter 3) finished in 0.054966 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:32:55] Completed time-step 10 [time=0.010000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:55] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:55] snes jacobian assemble finished in 0.135386 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:55] snes residual assemble finished in 0.178450 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:55] snes total assemble finished in 0.313837 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:55] snes total solve finished in 0.308956 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:55] snes all finished in 0.622793 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:55] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:55] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:55] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:55] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:55] KSP residual norm: 1.823023743963854e-12\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:55] Total time step finished in 0.625945 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:32:55] Beginning time-step 11 [time=0.011000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:55] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:55] snes residual assemble (iter 1) finished in 0.058251 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:55] snes jacobian assemble (iter 1) finished in 0.070195 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:55] snes residual assemble (iter 2) finished in 0.060348 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:55] snes jacobian assemble (iter 2) finished in 0.074899 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:55] snes residual assemble (iter 3) finished in 0.051505 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:32:55] Completed time-step 11 [time=0.011000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:55] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:55] snes jacobian assemble finished in 0.145095 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:55] snes residual assemble finished in 0.170105 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:55] snes total assemble finished in 0.315200 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:55] snes total solve finished in 0.305704 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:55] snes all finished in 0.620904 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:55] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:55] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:55] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:55] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:55] KSP residual norm: 1.2251573882089872e-12\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:55] Total time step finished in 0.623934 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:32:55] Beginning time-step 12 [time=0.012000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:55] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:55] snes residual assemble (iter 1) finished in 0.056976 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:55] snes jacobian assemble (iter 1) finished in 0.071849 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:56] snes residual assemble (iter 2) finished in 0.056423 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:56] snes jacobian assemble (iter 2) finished in 0.071179 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:56] snes residual assemble (iter 3) finished in 0.053917 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:32:56] Completed time-step 12 [time=0.012000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:56] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:56] snes jacobian assemble finished in 0.143029 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:56] snes residual assemble finished in 0.167317 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:56] snes total assemble finished in 0.310347 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:56] snes total solve finished in 0.310558 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:56] snes all finished in 0.620905 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:56] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:56] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:56] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:56] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:56] KSP residual norm: 1.3302493377814809e-12\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:56] Total time step finished in 0.624096 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:32:56] Beginning time-step 13 [time=0.013000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:56] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:56] snes residual assemble (iter 1) finished in 0.058420 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:56] snes jacobian assemble (iter 1) finished in 0.085513 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:56] snes residual assemble (iter 2) finished in 0.053627 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:56] snes jacobian assemble (iter 2) finished in 0.066665 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:57] snes residual assemble (iter 3) finished in 0.052600 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:32:57] Completed time-step 13 [time=0.013000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:57] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:57] snes jacobian assemble finished in 0.152178 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:57] snes residual assemble finished in 0.164647 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:57] snes total assemble finished in 0.316826 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:57] snes total solve finished in 0.305597 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:57] snes all finished in 0.622423 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:57] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:57] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:57] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:57] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:57] KSP residual norm: 9.485264346988007e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:57] Total time step finished in 0.625750 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:32:57] Beginning time-step 14 [time=0.014000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:57] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:57] snes residual assemble (iter 1) finished in 0.059836 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:57] snes jacobian assemble (iter 1) finished in 0.066874 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:57] snes residual assemble (iter 2) finished in 0.054504 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:57] snes jacobian assemble (iter 2) finished in 0.066127 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:57] snes residual assemble (iter 3) finished in 0.055265 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:32:57] Completed time-step 14 [time=0.014000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:57] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:57] snes jacobian assemble finished in 0.133001 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:57] snes residual assemble finished in 0.169606 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:57] snes total assemble finished in 0.302607 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:57] snes total solve finished in 0.298017 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:57] snes all finished in 0.600624 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:57] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:57] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:57] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:57] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:57] KSP residual norm: 5.563771754572408e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:57] Total time step finished in 0.605784 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:32:57] Beginning time-step 15 [time=0.015000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:57] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:57] snes residual assemble (iter 1) finished in 0.058037 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:57] snes jacobian assemble (iter 1) finished in 0.064877 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:58] snes residual assemble (iter 2) finished in 0.072884 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:58] snes jacobian assemble (iter 2) finished in 0.076817 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:58] snes residual assemble (iter 3) finished in 0.054000 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:32:58] Completed time-step 15 [time=0.015000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:58] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:58] snes jacobian assemble finished in 0.141694 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:58] snes residual assemble finished in 0.184922 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:58] snes total assemble finished in 0.326616 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:58] snes total solve finished in 0.302911 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:58] snes all finished in 0.629528 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:58] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:58] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:58] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:58] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:58] KSP residual norm: 3.798736097304205e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:58] Total time step finished in 0.634145 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:32:58] Beginning time-step 16 [time=0.016000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:58] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:58] snes residual assemble (iter 1) finished in 0.053026 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:58] snes jacobian assemble (iter 1) finished in 0.073007 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:58] snes residual assemble (iter 2) finished in 0.053514 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:58] snes jacobian assemble (iter 2) finished in 0.076105 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:58] snes residual assemble (iter 3) finished in 0.056390 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:32:58] Completed time-step 16 [time=0.016000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:58] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:58] snes jacobian assemble finished in 0.149112 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:58] snes residual assemble finished in 0.162931 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:58] snes total assemble finished in 0.312044 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:58] snes total solve finished in 0.312247 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:58] snes all finished in 0.624292 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:58] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:58] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:58] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:58] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:58] KSP residual norm: 2.904336915578076e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:58] Total time step finished in 0.628118 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:32:58] Beginning time-step 17 [time=0.017000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:58] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:59] snes residual assemble (iter 1) finished in 0.053800 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:59] snes jacobian assemble (iter 1) finished in 0.072010 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:59] snes residual assemble (iter 2) finished in 0.055455 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:59] snes jacobian assemble (iter 2) finished in 0.064343 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:59] snes residual assemble (iter 3) finished in 0.060773 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:32:59] Completed time-step 17 [time=0.017000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:59] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:59] snes jacobian assemble finished in 0.136353 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:59] snes residual assemble finished in 0.170029 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:59] snes total assemble finished in 0.306383 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:59] snes total solve finished in 0.302476 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:59] snes all finished in 0.608860 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:59] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:59] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:59] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:59] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:59] KSP residual norm: 2.578695439058482e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:59] Total time step finished in 0.612059 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:32:59] Beginning time-step 18 [time=0.018000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:32:59] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:59] snes residual assemble (iter 1) finished in 0.053668 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:59] snes jacobian assemble (iter 1) finished in 0.066983 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:32:59] snes residual assemble (iter 2) finished in 0.056982 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:00] snes jacobian assemble (iter 2) finished in 0.071068 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:00] snes residual assemble (iter 3) finished in 0.051665 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:00] Completed time-step 18 [time=0.018000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:00] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:00] snes jacobian assemble finished in 0.138051 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:00] snes residual assemble finished in 0.162316 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:00] snes total assemble finished in 0.300368 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:00] snes total solve finished in 0.312418 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:00] snes all finished in 0.612787 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:00] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:00] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:00] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:00] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:00] KSP residual norm: 2.5938781457491756e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:00] Total time step finished in 0.616206 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:00] Beginning time-step 19 [time=0.019000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:00] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:00] snes residual assemble (iter 1) finished in 0.051472 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:00] snes jacobian assemble (iter 1) finished in 0.065881 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:00] snes residual assemble (iter 2) finished in 0.054330 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:00] snes jacobian assemble (iter 2) finished in 0.064548 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:00] snes residual assemble (iter 3) finished in 0.054637 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:00] Completed time-step 19 [time=0.019000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:00] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:00] snes jacobian assemble finished in 0.130429 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:00] snes residual assemble finished in 0.160440 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:00] snes total assemble finished in 0.290869 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:00] snes total solve finished in 0.295867 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:00] snes all finished in 0.586737 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:00] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:00] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:00] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:00] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:00] KSP residual norm: 2.724815134484393e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:00] Total time step finished in 0.589723 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:00] Beginning time-step 20 [time=0.020000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:00] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:00] snes residual assemble (iter 1) finished in 0.056384 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:00] snes jacobian assemble (iter 1) finished in 0.088284 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:01] snes residual assemble (iter 2) finished in 0.061426 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:01] snes jacobian assemble (iter 2) finished in 0.068574 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:01] snes residual assemble (iter 3) finished in 0.057291 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:01] Completed time-step 20 [time=0.020000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:01] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:01] snes jacobian assemble finished in 0.156859 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:01] snes residual assemble finished in 0.175102 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:01] snes total assemble finished in 0.331961 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:01] snes total solve finished in 0.330426 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:01] snes all finished in 0.662388 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:01] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:01] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:01] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:01] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:01] KSP residual norm: 2.8432879810850585e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:01] Total time step finished in 0.665338 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:01] Beginning time-step 21 [time=0.021000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:01] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:01] snes residual assemble (iter 1) finished in 0.056220 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:01] snes jacobian assemble (iter 1) finished in 0.069013 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:01] snes residual assemble (iter 2) finished in 0.052707 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:01] snes jacobian assemble (iter 2) finished in 0.071672 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:02] snes residual assemble (iter 3) finished in 0.059882 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:02] Completed time-step 21 [time=0.021000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:02] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:02] snes jacobian assemble finished in 0.140686 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:02] snes residual assemble finished in 0.168810 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:02] snes total assemble finished in 0.309496 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:02] snes total solve finished in 0.314564 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:02] snes all finished in 0.624061 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:02] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:02] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:02] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:02] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:02] KSP residual norm: 5.518816414462115e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:02] Total time step finished in 0.627435 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:02] Beginning time-step 22 [time=0.022000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:02] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:02] snes residual assemble (iter 1) finished in 0.057911 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:02] snes jacobian assemble (iter 1) finished in 0.069286 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:02] snes residual assemble (iter 2) finished in 0.058985 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:02] snes jacobian assemble (iter 2) finished in 0.065588 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:02] snes residual assemble (iter 3) finished in 0.054347 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:02] Completed time-step 22 [time=0.022000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:02] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:02] snes jacobian assemble finished in 0.134874 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:02] snes residual assemble finished in 0.171245 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:02] snes total assemble finished in 0.306119 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:02] snes total solve finished in 0.297869 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:02] snes all finished in 0.603989 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:02] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:02] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:02] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:02] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:02] KSP residual norm: 5.396603935990876e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:02] Total time step finished in 0.607397 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:02] Beginning time-step 23 [time=0.023000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:02] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:02] snes residual assemble (iter 1) finished in 0.054594 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:02] snes jacobian assemble (iter 1) finished in 0.075214 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:03] snes residual assemble (iter 2) finished in 0.068960 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:03] snes jacobian assemble (iter 2) finished in 0.092645 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:03] snes residual assemble (iter 3) finished in 0.054873 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:03] Completed time-step 23 [time=0.023000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:03] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:03] snes jacobian assemble finished in 0.167859 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:03] snes residual assemble finished in 0.178428 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:03] snes total assemble finished in 0.346288 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:03] snes total solve finished in 0.308658 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:03] snes all finished in 0.654946 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:03] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:03] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:03] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:03] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:03] KSP residual norm: 4.992115207131811e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:03] Total time step finished in 0.658028 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:03] Beginning time-step 24 [time=0.024000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:03] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:03] snes residual assemble (iter 1) finished in 0.053179 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:03] snes jacobian assemble (iter 1) finished in 0.064961 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:03] snes residual assemble (iter 2) finished in 0.056819 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:03] snes jacobian assemble (iter 2) finished in 0.065948 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:04] snes residual assemble (iter 3) finished in 0.058894 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:04] Completed time-step 24 [time=0.024000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:04] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:04] snes jacobian assemble finished in 0.130909 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:04] snes residual assemble finished in 0.168893 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:04] snes total assemble finished in 0.299803 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:04] snes total solve finished in 0.306144 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:04] snes all finished in 0.605947 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:04] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:04] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:04] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:04] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:04] KSP residual norm: 4.1470510863443855e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:04] Total time step finished in 0.610270 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:04] Beginning time-step 25 [time=0.025000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:04] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:04] snes residual assemble (iter 1) finished in 0.051546 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:04] snes jacobian assemble (iter 1) finished in 0.070195 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:04] snes residual assemble (iter 2) finished in 0.059436 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:04] snes jacobian assemble (iter 2) finished in 0.074453 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:04] snes residual assemble (iter 3) finished in 0.055562 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:04] Completed time-step 25 [time=0.025000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:04] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:04] snes jacobian assemble finished in 0.144648 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:04] snes residual assemble finished in 0.166545 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:04] snes total assemble finished in 0.311194 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:04] snes total solve finished in 0.313012 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:04] snes all finished in 0.624207 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:04] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:04] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:04] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:04] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:04] KSP residual norm: 3.649985719888095e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:04] Total time step finished in 0.627273 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:04] Beginning time-step 26 [time=0.026000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:04] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:04] snes residual assemble (iter 1) finished in 0.057303 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:04] snes jacobian assemble (iter 1) finished in 0.069285 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:05] snes residual assemble (iter 2) finished in 0.054577 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:05] snes jacobian assemble (iter 2) finished in 0.075456 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:05] snes residual assemble (iter 3) finished in 0.071598 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:05] Completed time-step 26 [time=0.026000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:05] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:05] snes jacobian assemble finished in 0.144741 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:05] snes residual assemble finished in 0.183478 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:05] snes total assemble finished in 0.328220 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:05] snes total solve finished in 0.315077 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:05] snes all finished in 0.643297 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:05] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:05] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:05] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:05] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:05] KSP residual norm: 3.212475160425294e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:05] Total time step finished in 0.646545 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:05] Beginning time-step 27 [time=0.027000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:05] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:05] snes residual assemble (iter 1) finished in 0.056106 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:05] snes jacobian assemble (iter 1) finished in 0.074836 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:05] snes residual assemble (iter 2) finished in 0.056418 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:05] snes jacobian assemble (iter 2) finished in 0.065528 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:06] snes residual assemble (iter 3) finished in 0.064168 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:06] Completed time-step 27 [time=0.027000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:06] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:06] snes jacobian assemble finished in 0.140365 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:06] snes residual assemble finished in 0.176693 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:06] snes total assemble finished in 0.317058 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:06] snes total solve finished in 0.309207 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:06] snes all finished in 0.626266 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:06] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:06] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:06] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:06] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:06] KSP residual norm: 3.0291762230785944e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:06] Total time step finished in 0.629883 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:06] Beginning time-step 28 [time=0.028000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:06] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:06] snes residual assemble (iter 1) finished in 0.056954 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:06] snes jacobian assemble (iter 1) finished in 0.071182 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:06] snes residual assemble (iter 2) finished in 0.056569 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:06] snes jacobian assemble (iter 2) finished in 0.084910 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:06] snes residual assemble (iter 3) finished in 0.053740 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:06] Completed time-step 28 [time=0.028000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:06] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:06] snes jacobian assemble finished in 0.156092 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:06] snes residual assemble finished in 0.167263 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:06] snes total assemble finished in 0.323356 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:06] snes total solve finished in 0.307189 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:06] snes all finished in 0.630546 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:06] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:06] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:06] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:06] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:06] KSP residual norm: 3.3974243838847893e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:06] Total time step finished in 0.634314 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:06] Beginning time-step 29 [time=0.029000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:06] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:06] snes residual assemble (iter 1) finished in 0.058694 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:06] snes jacobian assemble (iter 1) finished in 0.066497 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:07] snes residual assemble (iter 2) finished in 0.056328 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:07] snes jacobian assemble (iter 2) finished in 0.070347 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:07] snes residual assemble (iter 3) finished in 0.056004 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:07] Completed time-step 29 [time=0.029000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:07] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:07] snes jacobian assemble finished in 0.136845 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:07] snes residual assemble finished in 0.171027 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:07] snes total assemble finished in 0.307873 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:07] snes total solve finished in 0.304819 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:07] snes all finished in 0.612692 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:07] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:07] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:07] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:07] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:07] KSP residual norm: 3.606601335737634e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:07] Total time step finished in 0.616077 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:07] Beginning time-step 30 [time=0.030000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:07] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:07] snes residual assemble (iter 1) finished in 0.054258 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:07] snes jacobian assemble (iter 1) finished in 0.063898 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:07] snes residual assemble (iter 2) finished in 0.076544 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:07] snes jacobian assemble (iter 2) finished in 0.069830 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:07] snes residual assemble (iter 3) finished in 0.056183 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:07] Completed time-step 30 [time=0.030000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:07] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:07] snes jacobian assemble finished in 0.133728 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:07] snes residual assemble finished in 0.186986 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:07] snes total assemble finished in 0.320714 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:07] snes total solve finished in 0.324314 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:07] snes all finished in 0.645029 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:07] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:07] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:07] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:07] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:07] KSP residual norm: 3.4912482690455003e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:07] Total time step finished in 0.648378 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:07] Beginning time-step 31 [time=0.031000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:07] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:08] snes residual assemble (iter 1) finished in 0.052547 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:08] snes jacobian assemble (iter 1) finished in 0.067627 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:08] snes residual assemble (iter 2) finished in 0.055399 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:08] snes jacobian assemble (iter 2) finished in 0.066897 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:08] snes residual assemble (iter 3) finished in 0.057111 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:08] Completed time-step 31 [time=0.031000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:08] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:08] snes jacobian assemble finished in 0.134524 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:08] snes residual assemble finished in 0.165057 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:08] snes total assemble finished in 0.299582 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:08] snes total solve finished in 0.305420 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:08] snes all finished in 0.605003 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:08] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:08] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:08] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:08] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:08] KSP residual norm: 3.311031048983187e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:08] Total time step finished in 0.607982 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:08] Beginning time-step 32 [time=0.032000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:08] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:08] snes residual assemble (iter 1) finished in 0.069889 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:08] snes jacobian assemble (iter 1) finished in 0.065946 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:08] snes residual assemble (iter 2) finished in 0.059449 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:09] snes jacobian assemble (iter 2) finished in 0.066368 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:09] snes residual assemble (iter 3) finished in 0.056064 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:09] Completed time-step 32 [time=0.032000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:09] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:09] snes jacobian assemble finished in 0.132314 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:09] snes residual assemble finished in 0.185403 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:09] snes total assemble finished in 0.317718 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:09] snes total solve finished in 0.301198 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:09] snes all finished in 0.618916 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:09] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:09] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:09] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:09] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:09] KSP residual norm: 3.147785168617662e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:09] Total time step finished in 0.622794 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:09] Beginning time-step 33 [time=0.033000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:09] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:09] snes residual assemble (iter 1) finished in 0.057940 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:09] snes jacobian assemble (iter 1) finished in 0.073361 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:09] snes residual assemble (iter 2) finished in 0.057272 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:09] snes jacobian assemble (iter 2) finished in 0.061754 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:09] snes residual assemble (iter 3) finished in 0.058374 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:09] Completed time-step 33 [time=0.033000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:09] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:09] snes jacobian assemble finished in 0.135116 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:09] snes residual assemble finished in 0.173587 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:09] snes total assemble finished in 0.308704 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:09] snes total solve finished in 0.315291 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:09] snes all finished in 0.623996 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:09] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:09] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:09] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:09] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:09] KSP residual norm: 3.0054180840121696e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:09] Total time step finished in 0.627175 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:09] Beginning time-step 34 [time=0.034000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:09] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:09] snes residual assemble (iter 1) finished in 0.061263 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:10] snes jacobian assemble (iter 1) finished in 0.067598 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:10] snes residual assemble (iter 2) finished in 0.052612 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:10] snes jacobian assemble (iter 2) finished in 0.066279 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:10] snes residual assemble (iter 3) finished in 0.057513 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:10] Completed time-step 34 [time=0.034000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:10] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:10] snes jacobian assemble finished in 0.133878 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:10] snes residual assemble finished in 0.171389 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:10] snes total assemble finished in 0.305267 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:10] snes total solve finished in 0.342945 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:10] snes all finished in 0.648212 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:10] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:10] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:10] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:10] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:10] KSP residual norm: 2.880872537870635e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:10] Total time step finished in 0.652852 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:10] Beginning time-step 35 [time=0.035000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:10] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:10] snes residual assemble (iter 1) finished in 0.056994 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:10] snes jacobian assemble (iter 1) finished in 0.067968 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:10] snes residual assemble (iter 2) finished in 0.075933 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:11] snes jacobian assemble (iter 2) finished in 0.110924 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:11] snes residual assemble (iter 3) finished in 0.052718 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:11] Completed time-step 35 [time=0.035000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:11] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:11] snes jacobian assemble finished in 0.178893 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:11] snes residual assemble finished in 0.185647 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:11] snes total assemble finished in 0.364540 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:11] snes total solve finished in 0.360291 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:11] snes all finished in 0.724832 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:11] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:11] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:11] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:11] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:11] KSP residual norm: 2.772214329205249e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:11] Total time step finished in 0.728362 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:11] Beginning time-step 36 [time=0.036000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:11] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:11] snes residual assemble (iter 1) finished in 0.056192 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:11] snes jacobian assemble (iter 1) finished in 0.074054 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:11] snes residual assemble (iter 2) finished in 0.055267 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:11] snes jacobian assemble (iter 2) finished in 0.074646 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:11] snes residual assemble (iter 3) finished in 0.060650 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:11] Completed time-step 36 [time=0.036000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:11] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:11] snes jacobian assemble finished in 0.148701 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:11] snes residual assemble finished in 0.172111 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:11] snes total assemble finished in 0.320812 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:11] snes total solve finished in 0.327512 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:11] snes all finished in 0.648324 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:11] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:11] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:11] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:11] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:11] KSP residual norm: 2.677488711288264e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:11] Total time step finished in 0.653759 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:11] Beginning time-step 37 [time=0.037000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:11] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:12] snes residual assemble (iter 1) finished in 0.063788 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:12] snes jacobian assemble (iter 1) finished in 0.082934 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:12] snes residual assemble (iter 2) finished in 0.054083 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:12] snes jacobian assemble (iter 2) finished in 0.065465 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:12] snes residual assemble (iter 3) finished in 0.055379 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:12] Completed time-step 37 [time=0.037000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:12] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:12] snes jacobian assemble finished in 0.148400 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:12] snes residual assemble finished in 0.173251 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:12] snes total assemble finished in 0.321652 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:12] snes total solve finished in 0.299687 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:12] snes all finished in 0.621339 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:12] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:12] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:12] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:12] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:12] KSP residual norm: 2.594467412068173e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:12] Total time step finished in 0.625146 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:12] Beginning time-step 38 [time=0.038000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:12] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:12] snes residual assemble (iter 1) finished in 0.053489 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:12] snes jacobian assemble (iter 1) finished in 0.067216 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:12] snes residual assemble (iter 2) finished in 0.051962 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:13] snes jacobian assemble (iter 2) finished in 0.078302 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:13] snes residual assemble (iter 3) finished in 0.056536 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:13] Completed time-step 38 [time=0.038000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:13] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:13] snes jacobian assemble finished in 0.145519 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:13] snes residual assemble finished in 0.161988 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:13] snes total assemble finished in 0.307507 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:13] snes total solve finished in 0.305786 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:13] snes all finished in 0.613294 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:13] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:13] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:13] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:13] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:13] KSP residual norm: 2.520930896387711e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:13] Total time step finished in 0.617353 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:13] Beginning time-step 39 [time=0.039000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:13] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:13] snes residual assemble (iter 1) finished in 0.056109 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:13] snes jacobian assemble (iter 1) finished in 0.070221 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:13] snes residual assemble (iter 2) finished in 0.057255 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:13] snes jacobian assemble (iter 2) finished in 0.071949 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:13] snes residual assemble (iter 3) finished in 0.051988 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:13] Completed time-step 39 [time=0.039000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:13] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:13] snes jacobian assemble finished in 0.142171 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:13] snes residual assemble finished in 0.165354 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:13] snes total assemble finished in 0.307525 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:13] snes total solve finished in 0.346872 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:13] snes all finished in 0.654397 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:13] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:13] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:13] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:13] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:13] KSP residual norm: 2.454903796773095e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:13] Total time step finished in 0.657562 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:13] Beginning time-step 40 [time=0.040000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:13] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:14] snes residual assemble (iter 1) finished in 0.069700 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:14] snes jacobian assemble (iter 1) finished in 0.082002 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:14] snes residual assemble (iter 2) finished in 0.060532 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:14] snes jacobian assemble (iter 2) finished in 0.071658 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:14] snes residual assemble (iter 3) finished in 0.051600 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:14] Completed time-step 40 [time=0.040000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:14] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:14] snes jacobian assemble finished in 0.153660 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:14] snes residual assemble finished in 0.181833 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:14] snes total assemble finished in 0.335493 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:14] snes total solve finished in 0.345597 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:14] snes all finished in 0.681091 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:14] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:14] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:14] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:14] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:14] KSP residual norm: 2.3947487990176495e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:14] Total time step finished in 0.685909 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:14] Beginning time-step 41 [time=0.041000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:14] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:14] snes residual assemble (iter 1) finished in 0.050683 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:14] snes jacobian assemble (iter 1) finished in 0.070086 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:14] snes residual assemble (iter 2) finished in 0.053892 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:15] snes jacobian assemble (iter 2) finished in 0.078276 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:15] snes residual assemble (iter 3) finished in 0.058155 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:15] Completed time-step 41 [time=0.041000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:15] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:15] snes jacobian assemble finished in 0.148363 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:15] snes residual assemble finished in 0.162731 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:15] snes total assemble finished in 0.311094 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:15] snes total solve finished in 0.296303 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:15] snes all finished in 0.607398 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:15] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:15] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:15] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:15] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:15] KSP residual norm: 2.339167550384377e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:15] Total time step finished in 0.611005 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:15] Beginning time-step 42 [time=0.042000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:15] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:15] snes residual assemble (iter 1) finished in 0.054839 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:15] snes jacobian assemble (iter 1) finished in 0.066487 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:15] snes residual assemble (iter 2) finished in 0.056464 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:15] snes jacobian assemble (iter 2) finished in 0.068273 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:15] snes residual assemble (iter 3) finished in 0.051967 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:15] Completed time-step 42 [time=0.042000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:15] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:15] snes jacobian assemble finished in 0.134760 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:15] snes residual assemble finished in 0.163271 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:15] snes total assemble finished in 0.298032 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:15] snes total solve finished in 0.302953 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:15] snes all finished in 0.600986 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:15] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:15] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:15] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:15] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:15] KSP residual norm: 2.287159622504933e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:15] Total time step finished in 0.604342 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:15] Beginning time-step 43 [time=0.043000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:15] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:15] snes residual assemble (iter 1) finished in 0.061411 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:16] snes jacobian assemble (iter 1) finished in 0.075528 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:16] snes residual assemble (iter 2) finished in 0.054021 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:16] snes jacobian assemble (iter 2) finished in 0.065023 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:16] snes residual assemble (iter 3) finished in 0.059750 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:16] Completed time-step 43 [time=0.043000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:16] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:16] snes jacobian assemble finished in 0.140551 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:16] snes residual assemble finished in 0.175183 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:16] snes total assemble finished in 0.315734 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:16] snes total solve finished in 0.323227 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:16] snes all finished in 0.638962 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:16] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:16] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:16] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:16] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:16] KSP residual norm: 2.2379691170269152e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:16] Total time step finished in 0.642469 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:16] Beginning time-step 44 [time=0.044000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:16] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:16] snes residual assemble (iter 1) finished in 0.065460 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:16] snes jacobian assemble (iter 1) finished in 0.070369 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:16] snes residual assemble (iter 2) finished in 0.056587 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:16] snes jacobian assemble (iter 2) finished in 0.070015 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:17] snes residual assemble (iter 3) finished in 0.054170 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:17] Completed time-step 44 [time=0.044000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:17] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:17] snes jacobian assemble finished in 0.140384 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:17] snes residual assemble finished in 0.176218 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:17] snes total assemble finished in 0.316602 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:17] snes total solve finished in 0.318336 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:17] snes all finished in 0.634939 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:17] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:17] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:17] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:17] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:17] KSP residual norm: 2.1910326279124938e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:17] Total time step finished in 0.639117 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:17] Beginning time-step 45 [time=0.045000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:17] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:17] snes residual assemble (iter 1) finished in 0.059994 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:17] snes jacobian assemble (iter 1) finished in 0.075597 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:17] snes residual assemble (iter 2) finished in 0.053457 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:17] snes jacobian assemble (iter 2) finished in 0.067989 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:17] snes residual assemble (iter 3) finished in 0.056869 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:17] Completed time-step 45 [time=0.045000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:17] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:17] snes jacobian assemble finished in 0.143586 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:17] snes residual assemble finished in 0.170321 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:17] snes total assemble finished in 0.313908 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:17] snes total solve finished in 0.329897 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:17] snes all finished in 0.643805 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:17] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:17] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:17] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:17] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:17] KSP residual norm: 2.1459343387204408e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:17] Total time step finished in 0.647729 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:17] Beginning time-step 46 [time=0.046000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:17] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:17] snes residual assemble (iter 1) finished in 0.059431 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:18] snes jacobian assemble (iter 1) finished in 0.069047 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:18] snes residual assemble (iter 2) finished in 0.052346 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:18] snes jacobian assemble (iter 2) finished in 0.076868 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:18] snes residual assemble (iter 3) finished in 0.054622 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:18] Completed time-step 46 [time=0.046000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:18] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:18] snes jacobian assemble finished in 0.145916 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:18] snes residual assemble finished in 0.166400 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:18] snes total assemble finished in 0.312316 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:18] snes total solve finished in 0.305764 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:18] snes all finished in 0.618081 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:18] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:18] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:18] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:18] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:18] KSP residual norm: 2.1023692903253009e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:18] Total time step finished in 0.622098 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:18] Beginning time-step 47 [time=0.047000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:18] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:18] snes residual assemble (iter 1) finished in 0.065499 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:18] snes jacobian assemble (iter 1) finished in 0.088544 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:18] snes residual assemble (iter 2) finished in 0.062030 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:18] snes jacobian assemble (iter 2) finished in 0.078183 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:19] snes residual assemble (iter 3) finished in 0.055102 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:19] Completed time-step 47 [time=0.047000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:19] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:19] snes jacobian assemble finished in 0.166728 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:19] snes residual assemble finished in 0.182631 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:19] snes total assemble finished in 0.349360 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:19] snes total solve finished in 0.325087 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:19] snes all finished in 0.674448 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:19] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:19] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:19] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:19] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:19] KSP residual norm: 2.0601145908516277e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:19] Total time step finished in 0.678038 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:19] Beginning time-step 48 [time=0.048000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:19] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:19] snes residual assemble (iter 1) finished in 0.055655 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:19] snes jacobian assemble (iter 1) finished in 0.071679 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:19] snes residual assemble (iter 2) finished in 0.056511 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:19] snes jacobian assemble (iter 2) finished in 0.109641 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:19] snes residual assemble (iter 3) finished in 0.059128 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:19] Completed time-step 48 [time=0.048000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:19] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:19] snes jacobian assemble finished in 0.181320 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:19] snes residual assemble finished in 0.171295 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:19] snes total assemble finished in 0.352616 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:19] snes total solve finished in 0.311050 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:19] snes all finished in 0.663666 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:19] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:19] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:19] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:19] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:19] KSP residual norm: 2.0190073656616047e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:19] Total time step finished in 0.667187 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:19] Beginning time-step 49 [time=0.049000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:19] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:19] snes residual assemble (iter 1) finished in 0.058467 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:20] snes jacobian assemble (iter 1) finished in 0.098267 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:20] snes residual assemble (iter 2) finished in 0.057893 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:20] snes jacobian assemble (iter 2) finished in 0.081625 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:20] snes residual assemble (iter 3) finished in 0.053054 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:20] Completed time-step 49 [time=0.049000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:20] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:20] snes jacobian assemble finished in 0.179893 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:20] snes residual assemble finished in 0.169415 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:20] snes total assemble finished in 0.349308 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:20] snes total solve finished in 0.325541 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:20] snes all finished in 0.674850 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:20] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:20] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:20] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:20] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:20] KSP residual norm: 1.9789281377099622e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:20] Total time step finished in 0.678196 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:20] Beginning time-step 50 [time=0.050000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:20] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:20] snes residual assemble (iter 1) finished in 0.061543 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:20] snes jacobian assemble (iter 1) finished in 0.071669 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:20] snes residual assemble (iter 2) finished in 0.075868 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:21] snes jacobian assemble (iter 2) finished in 0.101994 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:21] snes residual assemble (iter 3) finished in 0.057361 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:21] Completed time-step 50 [time=0.050000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:21] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:21] snes jacobian assemble finished in 0.173663 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:21] snes residual assemble finished in 0.194773 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:21] snes total assemble finished in 0.368436 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:21] snes total solve finished in 0.338004 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:21] snes all finished in 0.706441 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:21] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:21] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:21] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:21] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:21] KSP residual norm: 1.9397886127203137e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:21] Total time step finished in 0.710280 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:21] Beginning time-step 51 [time=0.051000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:21] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:21] snes residual assemble (iter 1) finished in 0.056311 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:21] snes jacobian assemble (iter 1) finished in 0.070985 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:21] snes residual assemble (iter 2) finished in 0.078939 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:21] snes jacobian assemble (iter 2) finished in 0.105573 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:22] snes residual assemble (iter 3) finished in 0.103794 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:22] Completed time-step 51 [time=0.051000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:22] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:22] snes jacobian assemble finished in 0.176558 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:22] snes residual assemble finished in 0.239045 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:22] snes total assemble finished in 0.415604 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:22] snes total solve finished in 0.394995 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:22] snes all finished in 0.810599 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:22] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:22] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:22] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:22] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:22] KSP residual norm: 1.9015227752094361e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:22] Total time step finished in 0.814687 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:22] Beginning time-step 52 [time=0.052000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:22] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:22] snes residual assemble (iter 1) finished in 0.069783 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:22] snes jacobian assemble (iter 1) finished in 0.102358 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:22] snes residual assemble (iter 2) finished in 0.079685 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:22] snes jacobian assemble (iter 2) finished in 0.108078 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:22] snes residual assemble (iter 3) finished in 0.057954 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:22] Completed time-step 52 [time=0.052000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:22] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:22] snes jacobian assemble finished in 0.210436 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:22] snes residual assemble finished in 0.207422 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:22] snes total assemble finished in 0.417859 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:22] snes total solve finished in 0.385210 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:22] snes all finished in 0.803070 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:22] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:22] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:22] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:22] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:22] KSP residual norm: 1.8640803303566684e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:22] Total time step finished in 0.808628 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:22] Beginning time-step 53 [time=0.053000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:22] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:23] snes residual assemble (iter 1) finished in 0.066563 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:23] snes jacobian assemble (iter 1) finished in 0.107639 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:23] snes residual assemble (iter 2) finished in 0.058790 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:23] snes jacobian assemble (iter 2) finished in 0.063755 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:23] snes residual assemble (iter 3) finished in 0.082777 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:23] Completed time-step 53 [time=0.053000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:23] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:23] snes jacobian assemble finished in 0.171394 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:23] snes residual assemble finished in 0.208131 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:23] snes total assemble finished in 0.379526 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:23] snes total solve finished in 0.312708 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:23] snes all finished in 0.692234 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:23] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:23] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:23] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:23] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:23] KSP residual norm: 1.8274221961511375e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:23] Total time step finished in 0.695415 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:23] Beginning time-step 54 [time=0.054000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:23] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:23] snes residual assemble (iter 1) finished in 0.064800 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:23] snes jacobian assemble (iter 1) finished in 0.091323 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:24] snes residual assemble (iter 2) finished in 0.087283 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:24] snes jacobian assemble (iter 2) finished in 0.093847 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:24] snes residual assemble (iter 3) finished in 0.051488 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:24] Completed time-step 54 [time=0.054000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:24] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:24] snes jacobian assemble finished in 0.185170 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:24] snes residual assemble finished in 0.203572 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:24] snes total assemble finished in 0.388742 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:24] snes total solve finished in 0.313546 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:24] snes all finished in 0.702289 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:24] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:24] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:24] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:24] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:24] KSP residual norm: 1.7915171687898241e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:24] Total time step finished in 0.706585 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:24] Beginning time-step 55 [time=0.055000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:24] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:24] snes residual assemble (iter 1) finished in 0.058709 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:24] snes jacobian assemble (iter 1) finished in 0.090771 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:24] snes residual assemble (iter 2) finished in 0.066659 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:24] snes jacobian assemble (iter 2) finished in 0.088966 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:25] snes residual assemble (iter 3) finished in 0.061716 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:25] Completed time-step 55 [time=0.055000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:25] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:25] snes jacobian assemble finished in 0.179737 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:25] snes residual assemble finished in 0.187085 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:25] snes total assemble finished in 0.366823 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:25] snes total solve finished in 0.325791 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:25] snes all finished in 0.692615 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:25] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:25] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:25] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:25] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:25] KSP residual norm: 1.7563395406980095e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:25] Total time step finished in 0.697137 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:25] Beginning time-step 56 [time=0.056000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:25] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:25] snes residual assemble (iter 1) finished in 0.064525 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:25] snes jacobian assemble (iter 1) finished in 0.100983 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:25] snes residual assemble (iter 2) finished in 0.056520 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:25] snes jacobian assemble (iter 2) finished in 0.068176 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:25] snes residual assemble (iter 3) finished in 0.056370 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:25] Completed time-step 56 [time=0.056000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:25] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:25] snes jacobian assemble finished in 0.169159 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:25] snes residual assemble finished in 0.177417 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:25] snes total assemble finished in 0.346576 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:25] snes total solve finished in 0.327787 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:25] snes all finished in 0.674364 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:25] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:25] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:25] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:25] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:25] KSP residual norm: 1.7218676080278154e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:25] Total time step finished in 0.677566 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:25] Beginning time-step 57 [time=0.057000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:25] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:25] snes residual assemble (iter 1) finished in 0.053563 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:25] snes jacobian assemble (iter 1) finished in 0.068895 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:26] snes residual assemble (iter 2) finished in 0.054569 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:26] snes jacobian assemble (iter 2) finished in 0.074856 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:26] snes residual assemble (iter 3) finished in 0.055297 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:26] Completed time-step 57 [time=0.057000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:26] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:26] snes jacobian assemble finished in 0.143751 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:26] snes residual assemble finished in 0.163430 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:26] snes total assemble finished in 0.307181 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:26] snes total solve finished in 0.319040 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:26] snes all finished in 0.626221 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:26] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:26] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:26] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:26] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:26] KSP residual norm: 1.6880823828194314e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:26] Total time step finished in 0.629286 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:26] Beginning time-step 58 [time=0.058000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:26] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:26] snes residual assemble (iter 1) finished in 0.058060 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:26] snes jacobian assemble (iter 1) finished in 0.084053 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:26] snes residual assemble (iter 2) finished in 0.054121 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:26] snes jacobian assemble (iter 2) finished in 0.083689 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:27] snes residual assemble (iter 3) finished in 0.059687 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:27] Completed time-step 58 [time=0.058000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:27] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:27] snes jacobian assemble finished in 0.167743 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:27] snes residual assemble finished in 0.171869 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:27] snes total assemble finished in 0.339613 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:27] snes total solve finished in 0.328476 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:27] snes all finished in 0.668090 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:27] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:27] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:27] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:27] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:27] KSP residual norm: 1.654966940852548e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:27] Total time step finished in 0.672669 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:27] Beginning time-step 59 [time=0.059000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:27] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:27] snes residual assemble (iter 1) finished in 0.058975 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:27] snes jacobian assemble (iter 1) finished in 0.068959 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:27] snes residual assemble (iter 2) finished in 0.053838 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:27] snes jacobian assemble (iter 2) finished in 0.086413 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:27] snes residual assemble (iter 3) finished in 0.057279 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:27] Completed time-step 59 [time=0.059000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:27] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:27] snes jacobian assemble finished in 0.155373 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:27] snes residual assemble finished in 0.170094 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:27] snes total assemble finished in 0.325467 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:27] snes total solve finished in 0.319989 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:27] snes all finished in 0.645457 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:27] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:27] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:27] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:27] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:27] KSP residual norm: 1.6225057952077133e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:27] Total time step finished in 0.648607 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:27] Beginning time-step 60 [time=0.060000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:27] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:27] snes residual assemble (iter 1) finished in 0.060041 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:27] snes jacobian assemble (iter 1) finished in 0.078585 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:28] snes residual assemble (iter 2) finished in 0.060084 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:28] snes jacobian assemble (iter 2) finished in 0.066955 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:28] snes residual assemble (iter 3) finished in 0.067249 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:28] Completed time-step 60 [time=0.060000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:28] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:28] snes jacobian assemble finished in 0.145540 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:28] snes residual assemble finished in 0.187375 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:28] snes total assemble finished in 0.332916 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:28] snes total solve finished in 0.319771 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:28] snes all finished in 0.652688 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:28] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:28] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:28] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:28] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:28] KSP residual norm: 1.5906844422391788e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:28] Total time step finished in 0.656458 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:28] Beginning time-step 61 [time=0.061000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:28] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:28] snes residual assemble (iter 1) finished in 0.051619 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:28] snes jacobian assemble (iter 1) finished in 0.072148 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:28] snes residual assemble (iter 2) finished in 0.058814 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:28] snes jacobian assemble (iter 2) finished in 0.068269 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:29] snes residual assemble (iter 3) finished in 0.054882 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:29] Completed time-step 61 [time=0.061000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:29] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:29] snes jacobian assemble finished in 0.140418 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:29] snes residual assemble finished in 0.165315 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:29] snes total assemble finished in 0.305734 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:29] snes total solve finished in 0.307735 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:29] snes all finished in 0.613469 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:29] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:29] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:29] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:29] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:29] KSP residual norm: 1.559489305007506e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:29] Total time step finished in 0.616479 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:29] Beginning time-step 62 [time=0.062000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:29] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:29] snes residual assemble (iter 1) finished in 0.058963 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:29] snes jacobian assemble (iter 1) finished in 0.065957 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:29] snes residual assemble (iter 2) finished in 0.064612 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:29] snes jacobian assemble (iter 2) finished in 0.072792 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:29] snes residual assemble (iter 3) finished in 0.069020 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:29] Completed time-step 62 [time=0.062000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:29] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:29] snes jacobian assemble finished in 0.138749 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:29] snes residual assemble finished in 0.192596 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:29] snes total assemble finished in 0.331346 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:29] snes total solve finished in 0.317900 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:29] snes all finished in 0.649247 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:29] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:29] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:29] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:29] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:29] KSP residual norm: 1.5289073471503766e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:29] Total time step finished in 0.653584 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:29] Beginning time-step 63 [time=0.063000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:29] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:29] snes residual assemble (iter 1) finished in 0.056476 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:29] snes jacobian assemble (iter 1) finished in 0.080183 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:30] snes residual assemble (iter 2) finished in 0.054365 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:30] snes jacobian assemble (iter 2) finished in 0.074253 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:30] snes residual assemble (iter 3) finished in 0.055015 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:30] Completed time-step 63 [time=0.063000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:30] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:30] snes jacobian assemble finished in 0.154437 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:30] snes residual assemble finished in 0.165857 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:30] snes total assemble finished in 0.320295 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:30] snes total solve finished in 0.317945 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:30] snes all finished in 0.638240 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:30] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:30] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:30] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:30] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:30] KSP residual norm: 1.498926054276716e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:30] Total time step finished in 0.641653 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:30] Beginning time-step 64 [time=0.064000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:30] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:30] snes residual assemble (iter 1) finished in 0.053184 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:30] snes jacobian assemble (iter 1) finished in 0.071559 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:30] snes residual assemble (iter 2) finished in 0.061825 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:30] snes jacobian assemble (iter 2) finished in 0.067592 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:31] snes residual assemble (iter 3) finished in 0.054441 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:31] Completed time-step 64 [time=0.064000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:31] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:31] snes jacobian assemble finished in 0.139152 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:31] snes residual assemble finished in 0.169451 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:31] snes total assemble finished in 0.308603 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:31] snes total solve finished in 0.315292 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:31] snes all finished in 0.623895 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:31] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:31] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:31] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:31] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:31] KSP residual norm: 1.469533311403596e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:31] Total time step finished in 0.628787 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:31] Beginning time-step 65 [time=0.065000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:31] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:31] snes residual assemble (iter 1) finished in 0.057662 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:31] snes jacobian assemble (iter 1) finished in 0.069963 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:31] snes residual assemble (iter 2) finished in 0.055834 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:31] snes jacobian assemble (iter 2) finished in 0.069050 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:31] snes residual assemble (iter 3) finished in 0.061989 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:31] Completed time-step 65 [time=0.065000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:31] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:31] snes jacobian assemble finished in 0.139013 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:31] snes residual assemble finished in 0.175486 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:31] snes total assemble finished in 0.314499 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:31] snes total solve finished in 0.307890 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:31] snes all finished in 0.622390 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:31] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:31] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:31] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:31] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:31] KSP residual norm: 1.44071736435257e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:31] Total time step finished in 0.625624 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:31] Beginning time-step 66 [time=0.066000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:31] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:31] snes residual assemble (iter 1) finished in 0.061144 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:31] snes jacobian assemble (iter 1) finished in 0.097493 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:32] snes residual assemble (iter 2) finished in 0.060611 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:32] snes jacobian assemble (iter 2) finished in 0.071868 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:32] snes residual assemble (iter 3) finished in 0.057476 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:32] Completed time-step 66 [time=0.066000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:32] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:32] snes jacobian assemble finished in 0.169361 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:32] snes residual assemble finished in 0.179232 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:32] snes total assemble finished in 0.348594 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:32] snes total solve finished in 0.320890 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:32] snes all finished in 0.669485 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:32] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:32] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:32] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:32] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:32] KSP residual norm: 1.4124667552947014e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:32] Total time step finished in 0.673625 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:32] Beginning time-step 67 [time=0.067000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:32] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:32] snes residual assemble (iter 1) finished in 0.054873 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:32] snes jacobian assemble (iter 1) finished in 0.068755 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:32] snes residual assemble (iter 2) finished in 0.057929 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:32] snes jacobian assemble (iter 2) finished in 0.098624 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:33] snes residual assemble (iter 3) finished in 0.054593 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:33] Completed time-step 67 [time=0.067000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:33] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:33] snes jacobian assemble finished in 0.167380 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:33] snes residual assemble finished in 0.167396 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:33] snes total assemble finished in 0.334776 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:33] snes total solve finished in 0.303027 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:33] snes all finished in 0.637803 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:33] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:33] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:33] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:33] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:33] KSP residual norm: 1.384770272643056e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:33] Total time step finished in 0.641309 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:33] Beginning time-step 68 [time=0.068000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:33] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:33] snes residual assemble (iter 1) finished in 0.060477 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:33] snes jacobian assemble (iter 1) finished in 0.074030 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:33] snes residual assemble (iter 2) finished in 0.062232 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:33] snes jacobian assemble (iter 2) finished in 0.069712 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:33] snes residual assemble (iter 3) finished in 0.053055 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:33] Completed time-step 68 [time=0.068000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:33] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:33] snes jacobian assemble finished in 0.143742 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:33] snes residual assemble finished in 0.175765 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:33] snes total assemble finished in 0.319507 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:33] snes total solve finished in 0.304871 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:33] snes all finished in 0.624378 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:33] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:33] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:33] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:33] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:33] KSP residual norm: 1.3576170257879366e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:33] Total time step finished in 0.627845 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:33] Beginning time-step 69 [time=0.069000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:33] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:33] snes residual assemble (iter 1) finished in 0.053823 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:33] snes jacobian assemble (iter 1) finished in 0.076379 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:34] snes residual assemble (iter 2) finished in 0.059124 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:34] snes jacobian assemble (iter 2) finished in 0.088090 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:34] snes residual assemble (iter 3) finished in 0.058457 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:34] Completed time-step 69 [time=0.069000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:34] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:34] snes jacobian assemble finished in 0.164470 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:34] snes residual assemble finished in 0.171405 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:34] snes total assemble finished in 0.335875 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:34] snes total solve finished in 0.319750 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:34] snes all finished in 0.655626 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:34] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:34] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:34] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:34] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:34] KSP residual norm: 1.3309962999704546e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:34] Total time step finished in 0.659912 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:34] Beginning time-step 70 [time=0.070000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:34] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:34] snes residual assemble (iter 1) finished in 0.055350 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:34] snes jacobian assemble (iter 1) finished in 0.075670 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:34] snes residual assemble (iter 2) finished in 0.062653 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:34] snes jacobian assemble (iter 2) finished in 0.070389 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:35] snes residual assemble (iter 3) finished in 0.068672 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:35] Completed time-step 70 [time=0.070000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:35] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:35] snes jacobian assemble finished in 0.146060 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:35] snes residual assemble finished in 0.186676 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:35] snes total assemble finished in 0.332737 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:35] snes total solve finished in 0.314789 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:35] snes all finished in 0.647526 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:35] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:35] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:35] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:35] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:35] KSP residual norm: 1.3048976223074322e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:35] Total time step finished in 0.650892 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:35] Beginning time-step 71 [time=0.071000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:35] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:35] snes residual assemble (iter 1) finished in 0.057291 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:35] snes jacobian assemble (iter 1) finished in 0.067962 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:35] snes residual assemble (iter 2) finished in 0.058466 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:35] snes jacobian assemble (iter 2) finished in 0.072164 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:35] snes residual assemble (iter 3) finished in 0.054558 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:35] Completed time-step 71 [time=0.071000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:35] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:35] snes jacobian assemble finished in 0.140127 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:35] snes residual assemble finished in 0.170315 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:35] snes total assemble finished in 0.310442 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:35] snes total solve finished in 0.304491 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:35] snes all finished in 0.614934 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:35] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:35] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:35] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:35] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:35] KSP residual norm: 1.2793107478892892e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:35] Total time step finished in 0.618687 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:35] Beginning time-step 72 [time=0.072000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:35] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:35] snes residual assemble (iter 1) finished in 0.057271 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:35] snes jacobian assemble (iter 1) finished in 0.100092 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:36] snes residual assemble (iter 2) finished in 0.094611 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:36] snes jacobian assemble (iter 2) finished in 0.191298 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:36] snes residual assemble (iter 3) finished in 0.078926 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:36] Completed time-step 72 [time=0.072000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:36] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:36] snes jacobian assemble finished in 0.291390 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:36] snes residual assemble finished in 0.230809 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:36] snes total assemble finished in 0.522200 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:36] snes total solve finished in 0.402978 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:36] snes all finished in 0.925179 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:36] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:36] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:36] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:36] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:36] KSP residual norm: 1.254225625472284e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:36] Total time step finished in 0.928924 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:36] Beginning time-step 73 [time=0.073000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:36] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:36] snes residual assemble (iter 1) finished in 0.072026 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:36] snes jacobian assemble (iter 1) finished in 0.166184 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:37] snes residual assemble (iter 2) finished in 0.117378 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:37] snes jacobian assemble (iter 2) finished in 0.133286 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:37] snes residual assemble (iter 3) finished in 0.054805 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:37] Completed time-step 73 [time=0.073000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:37] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:37] snes jacobian assemble finished in 0.299471 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:37] snes residual assemble finished in 0.244210 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:37] snes total assemble finished in 0.543681 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:37] snes total solve finished in 0.364110 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:37] snes all finished in 0.907791 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:37] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:37] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:37] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:37] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:37] KSP residual norm: 1.2296324004235187e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:37] Total time step finished in 0.912612 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:37] Beginning time-step 74 [time=0.074000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:37] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:37] snes residual assemble (iter 1) finished in 0.057262 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:37] snes jacobian assemble (iter 1) finished in 0.081511 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:37] snes residual assemble (iter 2) finished in 0.052352 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:38] snes jacobian assemble (iter 2) finished in 0.067784 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:38] snes residual assemble (iter 3) finished in 0.059720 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:38] Completed time-step 74 [time=0.074000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:38] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:38] snes jacobian assemble finished in 0.149295 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:38] snes residual assemble finished in 0.169335 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:38] snes total assemble finished in 0.318631 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:38] snes total solve finished in 0.303089 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:38] snes all finished in 0.621720 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:38] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:38] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:38] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:38] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:38] KSP residual norm: 1.2055214317915715e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:38] Total time step finished in 0.625895 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:38] Beginning time-step 75 [time=0.075000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:38] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:38] snes residual assemble (iter 1) finished in 0.071229 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:38] snes jacobian assemble (iter 1) finished in 0.117236 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:38] snes residual assemble (iter 2) finished in 0.080941 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:38] snes jacobian assemble (iter 2) finished in 0.073631 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:38] snes residual assemble (iter 3) finished in 0.056884 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:38] Completed time-step 75 [time=0.075000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:38] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:38] snes jacobian assemble finished in 0.190867 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:38] snes residual assemble finished in 0.209054 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:38] snes total assemble finished in 0.399921 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:38] snes total solve finished in 0.323176 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:38] snes all finished in 0.723098 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:38] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:38] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:38] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:38] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:38] KSP residual norm: 1.1818832599774743e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:38] Total time step finished in 0.726460 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:39] Beginning time-step 76 [time=0.076000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:39] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:39] snes residual assemble (iter 1) finished in 0.069799 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:39] snes jacobian assemble (iter 1) finished in 0.065250 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:39] snes residual assemble (iter 2) finished in 0.052844 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:39] snes jacobian assemble (iter 2) finished in 0.082670 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:39] snes residual assemble (iter 3) finished in 0.053563 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:39] Completed time-step 76 [time=0.076000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:39] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:39] snes jacobian assemble finished in 0.147921 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:39] snes residual assemble finished in 0.176207 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:39] snes total assemble finished in 0.324129 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:39] snes total solve finished in 0.313826 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:39] snes all finished in 0.637955 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:39] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:39] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:39] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:39] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:39] KSP residual norm: 1.1587086132912403e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:39] Total time step finished in 0.641655 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:39] Beginning time-step 77 [time=0.077000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:39] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:39] snes residual assemble (iter 1) finished in 0.056313 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:39] snes jacobian assemble (iter 1) finished in 0.088919 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:40] snes residual assemble (iter 2) finished in 0.069555 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:40] snes jacobian assemble (iter 2) finished in 0.108477 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:40] snes residual assemble (iter 3) finished in 0.077276 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:40] Completed time-step 77 [time=0.077000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:40] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:40] snes jacobian assemble finished in 0.197396 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:40] snes residual assemble finished in 0.203144 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:40] snes total assemble finished in 0.400541 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:40] snes total solve finished in 0.345974 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:40] snes all finished in 0.746516 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:40] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:40] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:40] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:40] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:40] KSP residual norm: 1.1359883918850772e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:40] Total time step finished in 0.750454 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:40] Beginning time-step 78 [time=0.078000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:40] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:40] snes residual assemble (iter 1) finished in 0.081036 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:40] snes jacobian assemble (iter 1) finished in 0.188081 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:41] snes residual assemble (iter 2) finished in 0.088458 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:41] snes jacobian assemble (iter 2) finished in 0.112221 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:41] snes residual assemble (iter 3) finished in 0.069551 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:41] Completed time-step 78 [time=0.078000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:41] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:41] snes jacobian assemble finished in 0.300303 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:41] snes residual assemble finished in 0.239046 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:41] snes total assemble finished in 0.539349 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:41] snes total solve finished in 0.530260 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:41] snes all finished in 1.069609 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:41] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:41] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:41] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:41] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:41] KSP residual norm: 1.1137136928455956e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:41] Total time step finished in 1.073724 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:41] Beginning time-step 79 [time=0.079000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:41] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:41] snes residual assemble (iter 1) finished in 0.065420 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:41] snes jacobian assemble (iter 1) finished in 0.094722 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:41] snes residual assemble (iter 2) finished in 0.055460 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:41] snes jacobian assemble (iter 2) finished in 0.066456 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:42] snes residual assemble (iter 3) finished in 0.059878 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:42] Completed time-step 79 [time=0.079000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:42] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:42] snes jacobian assemble finished in 0.161179 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:42] snes residual assemble finished in 0.180760 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:42] snes total assemble finished in 0.341939 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:42] snes total solve finished in 0.307394 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:42] snes all finished in 0.649333 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:42] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:42] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:42] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:42] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:42] KSP residual norm: 1.0918757714603923e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:42] Total time step finished in 0.654126 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:42] Beginning time-step 80 [time=0.080000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:42] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:42] snes residual assemble (iter 1) finished in 0.095788 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:42] snes jacobian assemble (iter 1) finished in 0.160124 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:42] snes residual assemble (iter 2) finished in 0.069931 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:42] snes jacobian assemble (iter 2) finished in 0.093708 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:43] snes residual assemble (iter 3) finished in 0.072905 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:43] Completed time-step 80 [time=0.080000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:43] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:43] snes jacobian assemble finished in 0.253832 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:43] snes residual assemble finished in 0.238624 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:43] snes total assemble finished in 0.492457 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:43] snes total solve finished in 0.376060 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:43] snes all finished in 0.868517 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:43] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:43] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:43] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:43] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:43] KSP residual norm: 1.0704660780696463e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:43] Total time step finished in 0.876466 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:43] Beginning time-step 81 [time=0.081000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:43] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:43] snes residual assemble (iter 1) finished in 0.124472 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:43] snes jacobian assemble (iter 1) finished in 0.151910 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:43] snes residual assemble (iter 2) finished in 0.068814 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:43] snes jacobian assemble (iter 2) finished in 0.149352 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:44] snes residual assemble (iter 3) finished in 0.063891 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:44] Completed time-step 81 [time=0.081000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:44] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:44] snes jacobian assemble finished in 0.301262 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:44] snes residual assemble finished in 0.257178 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:44] snes total assemble finished in 0.558441 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:44] snes total solve finished in 0.452275 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:44] snes all finished in 1.010717 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:44] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:44] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:44] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:44] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:44] KSP residual norm: 1.0494761919029659e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:44] Total time step finished in 1.017133 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:44] Beginning time-step 82 [time=0.082000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:44] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:44] snes residual assemble (iter 1) finished in 0.101454 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:44] snes jacobian assemble (iter 1) finished in 0.136995 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:44] snes residual assemble (iter 2) finished in 0.066074 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:44] snes jacobian assemble (iter 2) finished in 0.083675 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:45] snes residual assemble (iter 3) finished in 0.090849 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:45] Completed time-step 82 [time=0.082000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:45] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:45] snes jacobian assemble finished in 0.220671 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:45] snes residual assemble finished in 0.258378 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:45] snes total assemble finished in 0.479049 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:45] snes total solve finished in 0.410631 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:45] snes all finished in 0.889680 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:45] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:45] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:45] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:45] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:45] KSP residual norm: 1.0288978921680852e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:45] Total time step finished in 0.894157 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:45] Beginning time-step 83 [time=0.083000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:45] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:45] snes residual assemble (iter 1) finished in 0.093572 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:45] snes jacobian assemble (iter 1) finished in 0.107775 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:45] snes residual assemble (iter 2) finished in 0.077588 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:45] snes jacobian assemble (iter 2) finished in 0.087943 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:45] snes residual assemble (iter 3) finished in 0.054228 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:45] Completed time-step 83 [time=0.083000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:45] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:45] snes jacobian assemble finished in 0.195719 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:45] snes residual assemble finished in 0.225389 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:45] snes total assemble finished in 0.421108 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:45] snes total solve finished in 0.334213 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:45] snes all finished in 0.755322 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:45] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:45] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:45] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:45] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:45] KSP residual norm: 1.0087231173554922e-13\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:45] Total time step finished in 0.761074 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:45] Beginning time-step 84 [time=0.084000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:45] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:45] snes residual assemble (iter 1) finished in 0.056294 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:45] snes jacobian assemble (iter 1) finished in 0.071965 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:46] snes residual assemble (iter 2) finished in 0.061525 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:46] snes jacobian assemble (iter 2) finished in 0.087673 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:46] snes residual assemble (iter 3) finished in 0.063345 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:46] Completed time-step 84 [time=0.084000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:46] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:46] snes jacobian assemble finished in 0.159639 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:46] snes residual assemble finished in 0.181165 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:46] snes total assemble finished in 0.340804 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:46] snes total solve finished in 0.335276 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:46] snes all finished in 0.676080 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:46] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:46] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:46] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:46] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:46] KSP residual norm: 9.88943940258859e-14\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:46] Total time step finished in 0.679661 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:46] Beginning time-step 85 [time=0.085000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:46] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:46] snes residual assemble (iter 1) finished in 0.064511 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:46] snes jacobian assemble (iter 1) finished in 0.072003 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:46] snes residual assemble (iter 2) finished in 0.056567 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:46] snes jacobian assemble (iter 2) finished in 0.069450 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:47] snes residual assemble (iter 3) finished in 0.066445 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:47] Completed time-step 85 [time=0.085000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:47] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:47] snes jacobian assemble finished in 0.141453 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:47] snes residual assemble finished in 0.187524 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:47] snes total assemble finished in 0.328978 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:47] snes total solve finished in 0.324880 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:47] snes all finished in 0.653858 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:47] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:47] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:47] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:47] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:47] KSP residual norm: 9.695526093734429e-14\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:47] Total time step finished in 0.658358 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:47] Beginning time-step 86 [time=0.086000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:47] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:47] snes residual assemble (iter 1) finished in 0.110766 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:47] snes jacobian assemble (iter 1) finished in 0.099741 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:47] snes residual assemble (iter 2) finished in 0.065310 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:47] snes jacobian assemble (iter 2) finished in 0.103212 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:48] snes residual assemble (iter 3) finished in 0.059884 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:48] Completed time-step 86 [time=0.086000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:48] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:48] snes jacobian assemble finished in 0.202954 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:48] snes residual assemble finished in 0.235961 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:48] snes total assemble finished in 0.438915 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:48] snes total solve finished in 0.372581 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:48] snes all finished in 0.811497 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:48] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:48] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:48] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:48] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:48] KSP residual norm: 9.505415154771056e-14\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:48] Total time step finished in 0.820224 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:48] Beginning time-step 87 [time=0.087000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:48] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:48] snes residual assemble (iter 1) finished in 0.061358 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:48] snes jacobian assemble (iter 1) finished in 0.070728 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:48] snes residual assemble (iter 2) finished in 0.059500 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:48] snes jacobian assemble (iter 2) finished in 0.067253 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:48] snes residual assemble (iter 3) finished in 0.057883 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:48] Completed time-step 87 [time=0.087000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:48] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:48] snes jacobian assemble finished in 0.137981 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:48] snes residual assemble finished in 0.178742 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:48] snes total assemble finished in 0.316724 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:48] snes total solve finished in 0.324529 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:48] snes all finished in 0.641253 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:48] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:48] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:48] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:48] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:48] KSP residual norm: 9.319032030004811e-14\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:48] Total time step finished in 0.645169 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:48] Beginning time-step 88 [time=0.088000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:48] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:48] snes residual assemble (iter 1) finished in 0.055745 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:48] snes jacobian assemble (iter 1) finished in 0.072102 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:49] snes residual assemble (iter 2) finished in 0.060719 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:49] snes jacobian assemble (iter 2) finished in 0.116182 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:49] snes residual assemble (iter 3) finished in 0.061944 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:49] Completed time-step 88 [time=0.088000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:49] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:49] snes jacobian assemble finished in 0.188284 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:49] snes residual assemble finished in 0.178410 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:49] snes total assemble finished in 0.366694 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:49] snes total solve finished in 0.314419 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:49] snes all finished in 0.681113 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:49] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:49] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:49] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:49] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:49] KSP residual norm: 9.136303625051449e-14\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:49] Total time step finished in 0.685176 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:49] Beginning time-step 89 [time=0.089000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:49] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:49] snes residual assemble (iter 1) finished in 0.054571 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:49] snes jacobian assemble (iter 1) finished in 0.077034 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:49] snes residual assemble (iter 2) finished in 0.055711 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:49] snes jacobian assemble (iter 2) finished in 0.091478 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:50] snes residual assemble (iter 3) finished in 0.063013 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:50] Completed time-step 89 [time=0.089000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:50] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:50] snes jacobian assemble finished in 0.168513 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:50] snes residual assemble finished in 0.173296 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:50] snes total assemble finished in 0.341810 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:50] snes total solve finished in 0.327815 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:50] snes all finished in 0.669625 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:50] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:50] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:50] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:50] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:50] KSP residual norm: 8.957158337530988e-14\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:50] Total time step finished in 0.672688 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:50] Beginning time-step 90 [time=0.090000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:50] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:50] snes residual assemble (iter 1) finished in 0.065279 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:50] snes jacobian assemble (iter 1) finished in 0.069975 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:50] snes residual assemble (iter 2) finished in 0.074704 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:50] snes jacobian assemble (iter 2) finished in 0.094757 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:50] snes residual assemble (iter 3) finished in 0.056643 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:50] Completed time-step 90 [time=0.090000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:50] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:50] snes jacobian assemble finished in 0.164732 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:50] snes residual assemble finished in 0.196627 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:50] snes total assemble finished in 0.361360 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:50] snes total solve finished in 0.374848 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:50] snes all finished in 0.736208 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:50] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:50] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:50] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:50] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:50] KSP residual norm: 8.781525784749986e-14\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:50] Total time step finished in 0.740438 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:50] Beginning time-step 91 [time=0.091000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:50] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:50] snes residual assemble (iter 1) finished in 0.056702 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:51] snes jacobian assemble (iter 1) finished in 0.083408 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:51] snes residual assemble (iter 2) finished in 0.055520 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:51] snes jacobian assemble (iter 2) finished in 0.087039 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:51] snes residual assemble (iter 3) finished in 0.056587 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:51] Completed time-step 91 [time=0.091000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:51] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:51] snes jacobian assemble finished in 0.170448 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:51] snes residual assemble finished in 0.168810 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:51] snes total assemble finished in 0.339258 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:51] snes total solve finished in 0.305723 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:51] snes all finished in 0.644981 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:51] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:51] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:51] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:51] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:51] KSP residual norm: 8.609337163188067e-14\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:51] Total time step finished in 0.648621 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:51] Beginning time-step 92 [time=0.092000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:51] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:51] snes residual assemble (iter 1) finished in 0.053776 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:51] snes jacobian assemble (iter 1) finished in 0.088971 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:51] snes residual assemble (iter 2) finished in 0.055364 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:52] snes jacobian assemble (iter 2) finished in 0.085132 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:52] snes residual assemble (iter 3) finished in 0.087481 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:52] Completed time-step 92 [time=0.092000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:52] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:52] snes jacobian assemble finished in 0.174103 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:52] snes residual assemble finished in 0.196622 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:52] snes total assemble finished in 0.370725 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:52] snes total solve finished in 0.343699 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:52] snes all finished in 0.714425 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:52] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:52] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:52] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:52] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:52] KSP residual norm: 8.440524884657436e-14\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:52] Total time step finished in 0.718687 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:52] Beginning time-step 93 [time=0.093000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:52] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:52] snes residual assemble (iter 1) finished in 0.100822 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:52] snes jacobian assemble (iter 1) finished in 0.111610 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:52] snes residual assemble (iter 2) finished in 0.085643 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:52] snes jacobian assemble (iter 2) finished in 0.089016 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:53] snes residual assemble (iter 3) finished in 0.064805 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:53] Completed time-step 93 [time=0.093000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:53] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:53] snes jacobian assemble finished in 0.200627 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:53] snes residual assemble finished in 0.251272 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:53] snes total assemble finished in 0.451899 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:53] snes total solve finished in 0.372720 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:53] snes all finished in 0.824620 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:53] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:53] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:53] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:53] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:53] KSP residual norm: 8.275022733059477e-14\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:53] Total time step finished in 0.831221 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:53] Beginning time-step 94 [time=0.094000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:53] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:53] snes residual assemble (iter 1) finished in 0.054205 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:53] snes jacobian assemble (iter 1) finished in 0.068425 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:53] snes residual assemble (iter 2) finished in 0.062360 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:53] snes jacobian assemble (iter 2) finished in 0.065404 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:53] snes residual assemble (iter 3) finished in 0.058019 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:53] Completed time-step 94 [time=0.094000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:53] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:53] snes jacobian assemble finished in 0.133830 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:53] snes residual assemble finished in 0.174585 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:53] snes total assemble finished in 0.308415 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:53] snes total solve finished in 0.308483 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:53] snes all finished in 0.616899 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:53] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:53] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:53] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:53] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:53] KSP residual norm: 8.11276593179126e-14\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:53] Total time step finished in 0.620622 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:53] Beginning time-step 95 [time=0.095000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:53] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:53] snes residual assemble (iter 1) finished in 0.056698 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:53] snes jacobian assemble (iter 1) finished in 0.073993 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:54] snes residual assemble (iter 2) finished in 0.067432 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:54] snes jacobian assemble (iter 2) finished in 0.070827 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:54] snes residual assemble (iter 3) finished in 0.071009 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:54] Completed time-step 95 [time=0.095000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:54] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:54] snes jacobian assemble finished in 0.144821 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:54] snes residual assemble finished in 0.195140 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:54] snes total assemble finished in 0.339961 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:54] snes total solve finished in 0.330066 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:54] snes all finished in 0.670028 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:54] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:54] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:54] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:54] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:54] KSP residual norm: 7.953690639463803e-14\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:54] Total time step finished in 0.673735 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:54] Beginning time-step 96 [time=0.096000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:54] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:54] snes residual assemble (iter 1) finished in 0.062098 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:54] snes jacobian assemble (iter 1) finished in 0.076560 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:54] snes residual assemble (iter 2) finished in 0.062439 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:55] snes jacobian assemble (iter 2) finished in 0.104016 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:55] snes residual assemble (iter 3) finished in 0.058148 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:55] Completed time-step 96 [time=0.096000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:55] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:55] snes jacobian assemble finished in 0.180577 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:55] snes residual assemble finished in 0.182686 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:55] snes total assemble finished in 0.363263 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:55] snes total solve finished in 0.333992 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:55] snes all finished in 0.697256 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:55] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:55] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:55] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:55] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:55] KSP residual norm: 7.7977346003974e-14\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:55] Total time step finished in 0.701551 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:55] Beginning time-step 97 [time=0.097000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:55] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:55] snes residual assemble (iter 1) finished in 0.056516 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:55] snes jacobian assemble (iter 1) finished in 0.086664 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:55] snes residual assemble (iter 2) finished in 0.052309 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:55] snes jacobian assemble (iter 2) finished in 0.069580 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:55] snes residual assemble (iter 3) finished in 0.057724 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:55] Completed time-step 97 [time=0.097000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:55] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:55] snes jacobian assemble finished in 0.156245 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:55] snes residual assemble finished in 0.166550 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:55] snes total assemble finished in 0.322796 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:55] snes total solve finished in 0.307536 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:55] snes all finished in 0.630333 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:55] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:55] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:55] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:55] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:55] KSP residual norm: 7.644836640180842e-14\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:55] Total time step finished in 0.633973 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:55] Beginning time-step 98 [time=0.098000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:55] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:55] snes residual assemble (iter 1) finished in 0.056872 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:56] snes jacobian assemble (iter 1) finished in 0.081116 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:56] snes residual assemble (iter 2) finished in 0.065320 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:56] snes jacobian assemble (iter 2) finished in 0.089728 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:56] snes residual assemble (iter 3) finished in 0.068843 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:56] Completed time-step 98 [time=0.098000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:56] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:56] snes jacobian assemble finished in 0.170844 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:56] snes residual assemble finished in 0.191036 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:56] snes total assemble finished in 0.361881 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:56] snes total solve finished in 0.343390 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:56] snes all finished in 0.705271 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:56] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:56] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:56] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:56] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:56] KSP residual norm: 7.49493672413277e-14\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:56] Total time step finished in 0.709146 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:56] Beginning time-step 99 [time=0.099000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:56] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:56] snes residual assemble (iter 1) finished in 0.074947 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:56] snes jacobian assemble (iter 1) finished in 0.078222 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:56] snes residual assemble (iter 2) finished in 0.058292 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:57] snes jacobian assemble (iter 2) finished in 0.104301 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:57] snes residual assemble (iter 3) finished in 0.058490 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:57] Completed time-step 99 [time=0.099000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:57] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:57] snes jacobian assemble finished in 0.182524 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:57] snes residual assemble finished in 0.191729 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:57] snes total assemble finished in 0.374253 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:57] snes total solve finished in 0.314487 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:57] snes all finished in 0.688741 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:57] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:57] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:57] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:57] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:57] KSP residual norm: 7.347976108861959e-14\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:57] Total time step finished in 0.693536 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:57] Beginning time-step 100 [time=0.100000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:57] Solving using PETSc.SNES Solver\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:57] snes residual assemble (iter 1) finished in 0.071527 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:57] snes jacobian assemble (iter 1) finished in 0.088941 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:57] snes residual assemble (iter 2) finished in 0.053515 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:57] snes jacobian assemble (iter 2) finished in 0.067291 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:58] snes residual assemble (iter 3) finished in 0.061605 s\u001b[0m \u001b[97m\u001b[0m\n", + "\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[36m...................\u001b[0m \u001b[31m[2023-02-13 time=14:33:58] Completed time-step 100 [time=0.100000, dt=0.001000]\u001b[0m \u001b[36m...................\u001b[0m\n", + "\u001b[36m.......................................................................................................................\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:58] snes initialize zero matrices finished in 0 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:58] snes jacobian assemble finished in 0.156233 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:58] snes residual assemble finished in 0.186649 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:58] snes total assemble finished in 0.342882 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:58] snes total solve finished in 0.339960 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:58] snes all finished in 0.682843 s\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:58] Non-linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:58] Linear solver iterations: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:58] SNES converged reason: 3\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:58] KSP converged reason: 2\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[32m[2023-02-13 time=14:33:58] KSP residual norm: 7.203897138035597e-14\u001b[0m \u001b[97m\u001b[0m\n", + "\u001b[31m[2023-02-13 time=14:33:58] Total time step finished in 0.686340 s\u001b[0m \u001b[97m\u001b[0m\n" + ] + } + ], + "source": [ + "# Write initial condition(s) to file\n", + "results = dict()\n", + "os.makedirs(f\"resultsSphere_{i:03d}\", exist_ok=True)\n", + "for species_name, species in modelCur.sc.items:\n", + " results[species_name] = d.XDMFFile(\n", + " modelCur.mpi_comm_world, f\"resultsSphere_{i:03d}/{species_name}.xdmf\"\n", + " )\n", + " results[species_name].parameters[\"flush_output\"] = True\n", + " results[species_name].write(modelCur.sc[species_name].u[\"u\"], modelCur.t)\n", + "\n", + "# Solve\n", + "while True:\n", + " # Solve the system\n", + " modelCur.monolithic_solve()\n", + " # Save results for post processing\n", + " for species_name, species in modelCur.sc.items:\n", + " results[species_name].write(modelCur.sc[species_name].u[\"u\"], modelCur.t)\n", + " # End if we've passed the final time\n", + " if modelCur.t >= modelCur.final_t:\n", + " break" + ] + } + ], + "metadata": { + "jupytext": { + "cell_metadata_filter": "-all", + "main_language": "python", + "notebook_metadata_filter": "-all" + }, + "kernelspec": { + "display_name": "Python 3", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.10.6" + }, + "vscode": { + "interpreter": { + "hash": "916dbcbb3f70747c44a77c7bcd40155683ae19c65e1c03b4aa3499c5328201f1" + } + } + }, + "nbformat": 4, + "nbformat_minor": 5 +} diff --git a/examples/misc/rabona/test_different_step_size_err.py b/examples/misc/rabona/test_different_step_size_err.py index 58d8bb94..eb7916c3 100644 --- a/examples/misc/rabona/test_different_step_size_err.py +++ b/examples/misc/rabona/test_different_step_size_err.py @@ -17,7 +17,7 @@ errors = [] for dt in [0.012, 0.01, 0.008, 0.006, 0.004, 0.002]: - pc, sc, cc, rc = stubs.common.read_sbmodel('model.sbmodel') + pc, sc, cc, rc = stubs.model_assembly.read_sbmodel('model.sbmodel') # Define solvers mps = stubs.solvers.MultiphysicsSolver('iterative') diff --git a/setup.py b/setup.py index 5a49b787..ad9141e1 100644 --- a/setup.py +++ b/setup.py @@ -42,9 +42,12 @@ "termcolor", "pytest", "termplotlib", + "meshio", + "gmsh", + "h5py" ], # Required packages, pulls from pip if needed; do not use for Conda deployment # python_requires=">=3.5", # Python version restrictions - extras_require={"dev": ["h5py"], "docs": [ + extras_require={"docs": [ "jupyter-book@git+https://github.com/executablebooks/jupyter-book.git@master"]}, # Manual control if final package is compressible or not, set False to prevent the .egg from being made # zip_safe=False, diff --git a/stubs/__init__.py b/stubs/__init__.py index 568aac5b..f6eb861b 100644 --- a/stubs/__init__.py +++ b/stubs/__init__.py @@ -12,5 +12,5 @@ "common", "mesh", "unit", - "post_process" + "post_process", ] diff --git a/stubs/common.py b/stubs/common.py index ecce5160..1ad6b5c9 100644 --- a/stubs/common.py +++ b/stubs/common.py @@ -1,14 +1,15 @@ """ General functions: array manipulation, data i/o, etc """ -import functools +import os import time -import warnings from datetime import datetime from pathlib import Path -from typing import Any, Callable, Dict, List, Optional, Union +from typing import Any, Callable, Dict, List, Optional, Tuple, Union import dolfin as d +import gmsh +import meshio # import trimesh import numpy as np import pandas @@ -19,15 +20,11 @@ from pytz import timezone from termcolor import colored -import stubs - from .config import global_settings as gset - +from .deprecation import deprecated from .units import unit __all__ = [ - "deprecated", - "nan_to_none" "stubs_expression", "sub", "ref", @@ -57,23 +54,6 @@ root = 0 -def deprecated(func): - """This is a decorator which can be used to mark functions - as deprecated. It will result in a warning being emitted - when the function is used.""" - - @functools.wraps(func) - def new_func(*args, **kwargs): - warnings.simplefilter("always", DeprecationWarning) # turn off filter - warnings.warn( - "Call to deprecated function {}.".format(func.__name__), - category=DeprecationWarning, - stacklevel=2, - ) - warnings.simplefilter("default", DeprecationWarning) # reset filter - return func(*args, **kwargs) - - return new_func def stubs_expressions( @@ -273,7 +253,7 @@ def mesh_vertex_to_dof(V, species_index, index): return [mapping[x] for x in index] -def round_to_n(x: np.float64, n: int) -> int: +def round_to_n(x: float, n: int) -> int: """ Rounds to n sig figs """ @@ -371,116 +351,6 @@ def append_meshfunction_to_meshdomains(mesh, mesh_function): md.set_marker((idx, val), mf_dim) -# ==================================================== -# I/O -# ==================================================== - -@deprecated -def write_sbmodel(filepath, pc, sc, cc, rc): - """ - Takes a ParameterDF, SpeciesDF, CompartmentDF, and ReactionDF, and generates - a .sbmodel file (a convenient concatenation of .json files with syntax - similar to .xml) - """ - - # FIXME: This function cannot work due to undefined parameters - f = open(filepath, "w") - - f.write("\n") - # parameters - f.write("\n") - pdf.df.to_json(f) - f.write("\n\n") - # species - f.write("\n") - sdf.df.to_json(f) - f.write("\n\n") - # compartments - f.write("\n") - cdf.df.to_json(f) - f.write("\n\n") - # reactions - f.write("\n") - rdf.df.to_json(f) - f.write("\n\n") - - f.write("\n") - f.close() - print(f"sbmodel file saved successfully as {filepath}!") - - -def read_sbmodel(filepath, output_type=dict): - f = open(filepath, "r") - lines = f.read().splitlines() - if lines[0] != "": - raise Exception(f"Is {filepath} a valid .sbmodel file?") - - p_string = [] - c_string = [] - s_string = [] - r_string = [] - line_idx = 0 - - while True: - if line_idx >= len(lines): - break - line = lines[line_idx] - if line == "": - print("Finished reading in sbmodel file") - break - - if line == "": - print("Reading in parameters") - while True: - line_idx += 1 - if lines[line_idx] == "": - break - p_string.append(lines[line_idx]) - - if line == "": - print("Reading in species") - while True: - line_idx += 1 - if lines[line_idx] == "": - break - s_string.append(lines[line_idx]) - - if line == "": - print("Reading in compartments") - while True: - line_idx += 1 - if lines[line_idx] == "": - break - c_string.append(lines[line_idx]) - - if line == "": - print("Reading in reactions") - while True: - line_idx += 1 - if lines[line_idx] == "": - break - r_string.append(lines[line_idx]) - - line_idx += 1 - - pdf = pandas.read_json("".join(p_string)).sort_index() - sdf = pandas.read_json("".join(s_string)).sort_index() - cdf = pandas.read_json("".join(c_string)).sort_index() - rdf = pandas.read_json("".join(r_string)).sort_index() - pc = stubs.model_assembly.ParameterContainer(nan_to_none(pdf)) - sc = stubs.model_assembly.SpeciesContainer(nan_to_none(sdf)) - cc = stubs.model_assembly.CompartmentContainer(nan_to_none(cdf)) - rc = stubs.model_assembly.ReactionContainer(nan_to_none(rdf)) - - if output_type == dict: - return { - "parameter_container": pc, - "species_container": sc, - "compartment_container": cc, - "reaction_container": rc, - } - elif output_type == tuple: - return (pc, sc, cc, rc) def pint_unit_to_quantity(pint_unit): @@ -856,7 +726,7 @@ def facet_topology(f: d.Facet, mf3: d.MeshFunction): elif len(localCells) == 2: topology = "interface" # interface facet else: - raise Exception("Face has more than two cells") + raise Exception("Facet has more than two cells") return (topology, localCells) @@ -908,16 +778,124 @@ def DemoCuboidsMesh(N=16, condition=cube_condition): return (mesh, mf2, mf3) +def DemoSpheresMesh(outerRad: float = 0.5, + innerRad: float = 0.25, + interface_marker: int = 12, + outer_marker: int = 10, + inner_vol_tag: int = 2, + outer_vol_tag: int = 1) -> Tuple[d.Mesh, d.MeshFunction, d.MeshFunction]: + """ + Creates a mesh for use in examples that contains two distinct sphere subvolumes + with a shared interface surface. If the radius of the inner sphere is 0, mesh a + single sphere. + + Args: + outerRad: The radius of the outer sphere + innerRad: The radius of the inner sphere + interface_marker: The value to mark facets on the interface with + outer_marker: The value to mark facets on the outer sphere with + inner_vol_tag: The value to mark the inner spherical volume with + outer_vol_tag: The value to mark the outer spherical volume with + Returns: + A triplet (mesh, facet_marker, cell_marker) + """ + assert not np.isclose(outerRad, 0) + # Create the two sphere mesh using gmsh + gmsh.initialize() + gmsh.model.add("twoSpheres") + # first add sphere 1 of radius outerRad and center (0,0,0) + outer_sphere = gmsh.model.occ.addSphere(0, 0, 0, outerRad) + if np.isclose(innerRad, 0): + # Use outer_sphere only + gmsh.model.occ.synchronize() + gmsh.model.add_physical_group(3, [outer_sphere], tag=outer_vol_tag) + facets = gmsh.model.getBoundary([(3, outer_sphere)]) + assert (len(facets) == 1) + gmsh.model.add_physical_group(2, [facets[0][1]], tag=outer_marker) + else: + # Add inner_sphere (radius innerRad, center (0,0,0)) + inner_sphere = gmsh.model.occ.addSphere(0, 0, 0, innerRad) + # Create interface between spheres + two_spheres, (outer_sphere_map, inner_sphere_map) = gmsh.model.occ.fragment( + [(3, outer_sphere)], [(3, inner_sphere)]) + gmsh.model.occ.synchronize() + + # Get the outer boundary + outer_shell = gmsh.model.getBoundary(two_spheres, oriented=False) + assert (len(outer_shell) == 1) + # Get the inner boundary + inner_shell = gmsh.model.getBoundary(inner_sphere_map, oriented=False) + assert (len(inner_shell) == 1) + # Add physical markers for facets + gmsh.model.add_physical_group(outer_shell[0][0], [outer_shell[0][1]], tag=outer_marker) + gmsh.model.add_physical_group(inner_shell[0][0], [inner_shell[0][1]], tag=interface_marker) + + # Physical markers for + all_volumes = [tag[1] for tag in outer_sphere_map] + inner_volume = [tag[1] for tag in inner_sphere_map] + outer_volume = [] + for vol in all_volumes: + if vol not in inner_volume: + outer_volume.append(vol) + gmsh.model.add_physical_group(3, outer_volume, tag=outer_vol_tag) + gmsh.model.add_physical_group(3, inner_volume, tag=inner_vol_tag) + + def meshSizeCallback(dim, tag, x, y, z, lc): + # mesh length is smallest at the PM currently (0.5*outerRad) + # and the maximum mesh length is 1 (um) + # If inner sphere minimum mesh length is 0.9*innerRad + R = np.sqrt(x**2 + y**2 + z**2) + lc = 0.5*outerRad if np.isclose(innerRad, 0) else 0.9*innerRad + return min(lc, lc*(1.1-R/outerRad)) + + gmsh.model.mesh.setSizeCallback(meshSizeCallback) + + gmsh.model.mesh.generate(3) + gmsh.write("twoSpheres.msh") # save locally + gmsh.finalize() + + # load, convert to xdmf, and save as temp files + mesh3d_in = meshio.read("twoSpheres.msh") + + def create_mesh(mesh, cell_type): + cells = mesh.get_cells_type(cell_type) + cell_data = mesh.get_cell_data("gmsh:physical", cell_type) # extract values of tags + out_mesh = meshio.Mesh(points=mesh.points, cells={cell_type: cells}, cell_data={ + "mf_data": [cell_data]}) + return out_mesh + tet_mesh = create_mesh(mesh3d_in, 'tetra') + tri_mesh = create_mesh(mesh3d_in, 'triangle') + meshio.write(f"tempmesh_3dout.xdmf", tet_mesh) + meshio.write(f"tempmesh_2dout.xdmf", tri_mesh) + + # convert xdmf mesh to dolfin-style mesh + dmesh = d.Mesh() + mvc3 = d.MeshValueCollection("size_t", dmesh, 3) + with d.XDMFFile(f"tempmesh_3dout.xdmf") as infile: + infile.read(dmesh) + infile.read(mvc3, "mf_data") + mf3 = d.cpp.mesh.MeshFunctionSizet(dmesh, mvc3) + mvc2 = d.MeshValueCollection("size_t", dmesh, 2) + with d.XDMFFile(f"tempmesh_2dout.xdmf") as infile: + infile.read(mvc2, "mf_data") + mf2 = d.cpp.mesh.MeshFunctionSizet(dmesh, mvc2) + + # use os to remove temp meshes + os.remove(f"tempmesh_2dout.xdmf") + os.remove(f"tempmesh_3dout.xdmf") + os.remove(f"tempmesh_2dout.h5") + os.remove(f"tempmesh_3dout.h5") + os.remove(f"twoSpheres.msh") + # return dolfin mesh, mf2 (2d tags) and mf3 (3d tags) + return (dmesh, mf2, mf3) + + def write_mesh(mesh, mf2, mf3, filename="DemoCuboidMesh"): # Write mesh and meshfunctions to file hdf5 = d.HDF5File(mesh.mpi_comm(), filename + ".h5", "w") hdf5.write(mesh, "/mesh") - hdf5.write(mf3, f"/mf3") - hdf5.write(mf2, f"/mf2") + hdf5.write(mf3, "/mf3") + hdf5.write(mf2, "/mf2") # For visualization of domains - d.File(filename + "_mf3.pvd") << mf3 - d.File(filename + "_mf2.pvd") << mf2 - - -def nan_to_none(df): - return df.replace({np.nan: None}) + d.File(f"{filename}_mf3.pvd") << mf3 + d.File(f"{filename}_mf2.pvd") << mf2 diff --git a/stubs/deprecation.py b/stubs/deprecation.py new file mode 100644 index 00000000..727ddf34 --- /dev/null +++ b/stubs/deprecation.py @@ -0,0 +1,22 @@ +import warnings +import functools + +__all__ = ["deprecated"] + +def deprecated(func): + """This is a decorator which can be used to mark functions + as deprecated. It will result in a warning being emitted + when the function is used.""" + + @functools.wraps(func) + def new_func(*args, **kwargs): + warnings.simplefilter("always", DeprecationWarning) # turn off filter + warnings.warn( + "Call to deprecated function {}.".format(func.__name__), + category=DeprecationWarning, + stacklevel=2, + ) + warnings.simplefilter("default", DeprecationWarning) # reset filter + return func(*args, **kwargs) + + return new_func diff --git a/stubs/model_assembly.py b/stubs/model_assembly.py index 8edd44bb..587b75b3 100644 --- a/stubs/model_assembly.py +++ b/stubs/model_assembly.py @@ -29,14 +29,13 @@ from .common import (np_smart_hstack, pint_quantity_to_unit, pint_unit_to_quantity, sub) from .config import global_settings as gset +from .deprecation import deprecated from .units import unit -import stubs.common as common - Print = PETSc.Sys.Print __all__ = ["empty_sbmodel", "sbmodel_from_locals", "Compartment", - "Parameter", "Reaction", "Species", "sbmodel_from_locals"] + "Parameter", "Reaction", "Species", "sbmodel_from_locals", "nane_to_none", "read_sbmodel", "write_sbmodel"] comm = d.MPI.comm_world rank = comm.rank @@ -1832,3 +1831,119 @@ def sbmodel_from_locals(local_values): cc.add(compartments) rc.add(reactions) return pc, sc, cc, rc + +def nan_to_none(df): + return df.replace({np.nan: None}) + + +# ==================================================== +# I/O +# ==================================================== + +@deprecated +def write_sbmodel(filepath, pc, sc, cc, rc): + """ + Takes a ParameterDF, SpeciesDF, CompartmentDF, and ReactionDF, and generates + a .sbmodel file (a convenient concatenation of .json files with syntax + similar to .xml) + """ + + # FIXME: This function cannot work due to undefined parameters + f = open(filepath, "w") + + f.write("\n") + # parameters + f.write("\n") + pdf.df.to_json(f) + f.write("\n\n") + # species + f.write("\n") + sdf.df.to_json(f) + f.write("\n\n") + # compartments + f.write("\n") + cdf.df.to_json(f) + f.write("\n\n") + # reactions + f.write("\n") + rdf.df.to_json(f) + f.write("\n\n") + + f.write("\n") + f.close() + print(f"sbmodel file saved successfully as {filepath}!") + +@deprecated +def read_sbmodel(filepath, output_type=dict): + f = open(filepath, "r") + lines = f.read().splitlines() + if lines[0] != "": + raise Exception(f"Is {filepath} a valid .sbmodel file?") + + p_string = [] + c_string = [] + s_string = [] + r_string = [] + line_idx = 0 + + while True: + if line_idx >= len(lines): + break + line = lines[line_idx] + if line == "": + print("Finished reading in sbmodel file") + break + + if line == "": + print("Reading in parameters") + while True: + line_idx += 1 + if lines[line_idx] == "": + break + p_string.append(lines[line_idx]) + + if line == "": + print("Reading in species") + while True: + line_idx += 1 + if lines[line_idx] == "": + break + s_string.append(lines[line_idx]) + + if line == "": + print("Reading in compartments") + while True: + line_idx += 1 + if lines[line_idx] == "": + break + c_string.append(lines[line_idx]) + + if line == "": + print("Reading in reactions") + while True: + line_idx += 1 + if lines[line_idx] == "": + break + r_string.append(lines[line_idx]) + + line_idx += 1 + + pdf = pandas.read_json("".join(p_string)).sort_index() + sdf = pandas.read_json("".join(s_string)).sort_index() + cdf = pandas.read_json("".join(c_string)).sort_index() + rdf = pandas.read_json("".join(r_string)).sort_index() + import pdb; pdb.set_trace() + pc = stubs.model_assembly.ParameterContainer(nan_to_none(pdf)) + sc = stubs.model_assembly.SpeciesContainer(nan_to_none(sdf)) + cc = stubs.model_assembly.CompartmentContainer(nan_to_none(cdf)) + rc = stubs.model_assembly.ReactionContainer(nan_to_none(rdf)) + + if output_type == dict: + return { + "parameter_container": pc, + "species_container": sc, + "compartment_container": cc, + "reaction_container": rc, + } + elif output_type == tuple: + return (pc, sc, cc, rc) diff --git a/stubs/utils.py b/stubs/utils.py index 996eee77..cb5cbe1e 100644 --- a/stubs/utils.py +++ b/stubs/utils.py @@ -4,8 +4,12 @@ # ==================================================== import os + +import numpy as np from pandas import read_json +from .model_assembly import (CompartmentContainer, ParameterContainer, + ReactionContainer, SpeciesContainer, nan_to_none) __all__ = ["json_to_ObjectContainer"]