DESCRIPTION

Package: SVbyEye
Title: Visualization of genomic structural variants
Version: 0.99.0
Authors@R: 
    person(given = "David",
           family = "Porubsky",
           role = c("aut", "cre"),
           email = "david.porubsky@gmail.com",
           comment = c(ORCID = "0000-0001-8414-8966"))                 
Description: SVbyEye is an implements functions to detect and visualize genomic structural variation between two and multiple sequences.
  To achieve this, SVbyEye introduces 4 new ggplot2 geoms (geom_miropeats(), geom_arrowhead(), geom_roundrect(), and geom_wide_arc()) together
  with a number of other functions simplify oparations on FASTA alignments reported PAF format. A number of wrapper functions allows user to
  produce near publication ready figures.
Depends:
  R (>= 4.2.0)
Imports:
  ggplot2 (>= 3.4.0),
  ggnewscale,
  ggforce,
  gggenes,
  scales,
  grid,
  stats,
  dplyr,
  stringr,
  magrittr,
  data.table,
  S4Vectors,
  methods,
  tibble,
  utils,
  GenomicRanges,
  GenomicAlignments (>= 1.34.0),
  BSgenome,
  Biostrings,
  IRanges,
  GenomeInfoDb,
  Rsamtools,
  wesanderson,
  randomcoloR
Suggests:
  BSgenome.Hsapiens.UCSC.hg38,
  BiocStyle,
  testthat,
  knitr,
  rmarkdown
License: file LICENSE
Encoding: UTF-8
LazyLoad: yes
VignetteBuilder: knitr
biocViews: Software, GenomicVariation, StructuralVariation, VariantDetection, GenomeAnnotation, ComparativeGenomics, Sequencing, WholeGenome
URL: https://github.com/daewoooo/SVbyEye
BugReports: https://github.com/daewoooo/SVbyEye/issues
RoxygenNote: 7.2.3