updated command section

RECETOX · Aug 9, 2024 · 828c48d · 828c48d
1 parent 2dbdd36
commit 828c48d
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Showing 8 changed files with 8 additions and 9 deletions.
diff --git a/tools/mfassignr/mfassignr_histnoise.xml b/tools/mfassignr/mfassignr_histnoise.xml
@@ -10,7 +10,7 @@
     <expand macro="creator" />
     <expand macro="requirements" />
     <command detect_errors="exit_code"><![CDATA[
-        Rscript -e 'source("${run_script}")'
+        Rscript '${run_script}'
     ]]></command>
     <configfiles>
         <configfile name="run_script"><![CDATA[

diff --git a/tools/mfassignr/mfassignr_isofiltr.xml b/tools/mfassignr/mfassignr_isofiltr.xml
@@ -14,8 +14,7 @@
 
     <expand macro="requirements" />
     <command detect_errors="exit_code"><![CDATA[
-        Rscript
-            -e 'source("${mfassignr_isofiltr}")'
+        Rscript '${run_script}'
     ]]>
     </command>
     <configfiles>

diff --git a/tools/mfassignr/mfassignr_kmdnoise.xml b/tools/mfassignr/mfassignr_kmdnoise.xml
@@ -13,7 +13,7 @@
     <expand macro="creator" />
     <expand macro="requirements" />
     <command detect_errors="exit_code"><![CDATA[
-        Rscript -e 'source("${run_script}")'
+        Rscript '${run_script}'
     ]]></command>
     <configfiles>
         <configfile name="run_script"><![CDATA[

diff --git a/tools/mfassignr/mfassignr_mfassign.xml b/tools/mfassignr/mfassignr_mfassign.xml
@@ -10,7 +10,7 @@
     <expand macro="creator" />
     <expand macro="requirements" />
     <command detect_errors="exit_code"><![CDATA[
-        Rscript -e 'source("${run_script}")'
+        Rscript '${run_script}'
     ]]></command>
     <configfiles>
         <configfile name="run_script"><![CDATA[

diff --git a/tools/mfassignr/mfassignr_mfassignCHO.xml b/tools/mfassignr/mfassignr_mfassignCHO.xml
@@ -13,7 +13,7 @@
     <expand macro="creator" />
     <expand macro="requirements" />
     <command detect_errors="exit_code"><![CDATA[
-        Rscript -e 'source("${run_script}")'
+        Rscript '${run_script}'
     ]]></command>
     <configfiles>
         <configfile name="run_script"><![CDATA[

diff --git a/tools/mfassignr/mfassignr_recal.xml b/tools/mfassignr/mfassignr_recal.xml
@@ -13,7 +13,7 @@
     <expand macro="creator" />
     <expand macro="requirements" />
     <command detect_errors="exit_code"><![CDATA[
-        Rscript -e 'source("${run_script}")'
+        Rscript '${run_script}'
     ]]></command>
     <configfiles>
         <configfile name="run_script"><![CDATA[

diff --git a/tools/mfassignr/mfassignr_recallist.xml b/tools/mfassignr/mfassignr_recallist.xml
@@ -13,7 +13,7 @@
     <expand macro="creator" />
     <expand macro="requirements" />
     <command detect_errors="exit_code"><![CDATA[
-        Rscript -e 'source("${run_script}")'
+        Rscript '${run_script}'
     ]]></command>
     <configfiles>
         <configfile name="run_script"><![CDATA[

diff --git a/tools/mfassignr/mfassignr_snplot.xml b/tools/mfassignr/mfassignr_snplot.xml
@@ -10,7 +10,7 @@
     <expand macro="creator"/>
     <expand macro="requirements" />
     <command detect_errors="exit_code"><![CDATA[
-        Rscript -e 'source("${run_script}")'
+        Rscript '${run_script}'
     ]]></command>
     <configfiles>
         <configfile name="run_script"><![CDATA[