Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Ground truth select of spatial transcriptomic datasets #21

Open
CaiusZ7 opened this issue Dec 15, 2023 · 0 comments
Open

Ground truth select of spatial transcriptomic datasets #21

CaiusZ7 opened this issue Dec 15, 2023 · 0 comments

Comments

@CaiusZ7
Copy link

CaiusZ7 commented Dec 15, 2023

Hi~ @wenruyustc

Thank you very much for your work, it is very interesting and helps me a lot!

I tried to find 1,000 genes with the highest CVi values using the content in the article Method for spatial transcriptomic datasets with more than 1000 genes. But I found that the genes I obtained did not correspond to the spatial transcriptomic datasets ground truth genes used in the data in Google Cloud Drive you gave.

Would you mind sharing your code on how you get the ground truth genes from spatial transcriptomic datasets?

Thanks again!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant