ensemble.yml

name: "GenerateEnsemble"
on:
  workflow_dispatch:
  # schedule:
  #   - cron: "15 11,23 * * 2,3"


jobs:
  
  ensemble:
  # if: github.repository_owner == 'Predizioni-Epidemiologiche-Italia'
    runs-on: ubuntu-latest
    env:
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

    steps:
    # checkout repo
    - uses: actions/checkout@v3
      with: 
        path: './repo/'

    # Checkout the python tools repo
    # -------------------------------------------      
    - name: checkout python tools repo
      uses: actions/checkout@v3
      with:
        token: ${{ secrets.GITHUB_TOKEN }}
        repository: 'Predizioni-Epidemiologiche-Italia/hub-tools'
        ref: 'main'
        path: './tools/'
     
    - uses: r-lib/actions/setup-r@v2
      with:
        install-r: false
        use-public-rspm: true
        
    # - name: Installing dependencies
    #   run: |
    #     install.packages("remotes")
    #     remotes::install_github("Infectious-Disease-Modeling-Hubs/hubUtils")
    #     remotes::install_github("Infectious-Disease-Modeling-Hubs/hubEnsembles")
    #     install.packages("dplyr")
    #     install.packages("jsonlite")
    #     install.packages("optparse")
    #     install.packages("purrr")
    #   shell: Rscript {0}

    # - name: Generate Ensemble
    #   run: |
    #     # call R script from tools
    #     Rscript ./tools/R-code/generate-ensemble.R --hub_path "./repo" --agg_fun "median" --model_id "hubEnsemble" --team_id "respicast"

    - name: Commit changes
      uses: EndBug/add-and-commit@v7
      with: 
          cwd: './repo'
          message: "Update ensemble data"
          default_author: github_actions
          push: true

    # Save changes to artifact for later persisting 
    - name: Save changes to artifact
      env:
        changed_files: ${{ needs.validate_request.outputs.changed_files }}
      run: |
        echo "{ \"pr-changes\" : \"previsioni/Influcast-Ensemble/2023_46.csv\" }" > pr_changes.json
          
    - name: Upload changes
      uses: actions/upload-artifact@v2
      with:
        name: pr_changes
        path: ./pr_changes.json