README.md

mebold-curation

Code to curate complex-valued, multi-echo BOLD data acquired with the CMRR sequence.

The code in this repo assumes the following:

1. The protocol was named according to ReproIn convention.
   • BOLD: func_task-rest_acq-MBME_run-01
   • BOLD field maps: fmap-epi_acq-func_dir-AP
     • This assumes the BOLD field maps are multi-echo, even though we don't need multiple echoes for field maps.
   • T1w: anat-T1w
2. You are planning to download the DICOMs to CUBIC and convert them into a BIDS dataset with heudiconv.
   • DICOMs will go in sourcedata/.
   • BIDS-format data will go in dset/.
3. Raw data are on Flywheel, in the project bbl/MEBOLD.
4. Your CUBIC project directory is at /cbica/projects/mebold.

TODO: Create conda environment config file.