updated tcdb download to adjust for updated uniprot api calls

PedroMTQ · Jul 2, 2022 · 9d88634 · 9d88634
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diff --git a/README.md b/README.md
@@ -12,6 +12,9 @@ The main goals of this tool are to:
 
 If you have only loose reads, you need to assemble them first; when you have assembled reads/genomes you need to predict the protein coding regions (gene prediction - e.g. prodigal) to convert your data into a protein fasta that Mantis can then use.
 
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+**MANTIS IS NO LONGER IN ACTIVE DEVELOPMENT**, but I'm still maintaining it. I will try to answer any issues and fix any problems as soon as possible (usually over the weekend).
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 **Mantis is compatible with genomes and metagenomes.**
 
 - [Installation](#installation)

diff --git a/mantis/Assembler.py b/mantis/Assembler.py
diff --git a/mantis/Consensus.py b/mantis/Consensus.py
diff --git a/mantis/Database_generator.py b/mantis/Database_generator.py
diff --git a/mantis/Exceptions.py b/mantis/Exceptions.py
diff --git a/mantis/Homology_processor.py b/mantis/Homology_processor.py
diff --git a/mantis/MANTIS.py b/mantis/MANTIS.py
diff --git a/mantis/Metadata.py b/mantis/Metadata.py
diff --git a/mantis/Metadata_SQLITE_Connector.py b/mantis/Metadata_SQLITE_Connector.py