diff --git a/docker/depends/pecan_package_dependencies.csv b/docker/depends/pecan_package_dependencies.csv
index f8c54204a7..2a4a14dfe1 100644
--- a/docker/depends/pecan_package_dependencies.csv
+++ b/docker/depends/pecan_package_dependencies.csv
@@ -123,6 +123,8 @@
 "jsonlite","*","modules/data.atmosphere","Imports",FALSE
 "jsonlite","*","modules/data.remote","Suggests",FALSE
 "keras3","*","modules/assim.sequential","Suggests",FALSE
+"knitr","*","base/visualization","Suggests",FALSE
+"knitr","*","modules/data.atmosphere","Suggests",FALSE
 "knitr",">= 1.42","base/db","Suggests",FALSE
 "knitr",">= 1.42","base/qaqc","Suggests",FALSE
 "knitr",">= 1.42","modules/allometry","Suggests",FALSE
@@ -482,54 +484,55 @@
 "rlang","*","modules/uncertainty","Imports",FALSE
 "rlang",">= 0.2.0","modules/data.atmosphere","Imports",FALSE
 "rlist","*","modules/assim.sequential","Suggests",FALSE
+"rmarkdown","*","base/visualization","Suggests",FALSE
 "rmarkdown",">= 2.19","base/db","Suggests",FALSE
 "rmarkdown",">= 2.19","base/qaqc","Suggests",FALSE
 "rmarkdown",">= 2.19","modules/allometry","Suggests",FALSE
 "rmarkdown",">= 2.19","modules/assim.batch","Suggests",FALSE
 "rmarkdown",">= 2.19","modules/meta.analysis","Suggests",FALSE
 "rmarkdown",">= 2.19","modules/photosynthesis","Suggests",FALSE
-"roxygen2","== 7.3.1","base/all","Roxygen",FALSE
-"roxygen2","== 7.3.1","base/db","Roxygen",FALSE
-"roxygen2","== 7.3.1","base/logger","Roxygen",FALSE
-"roxygen2","== 7.3.1","base/qaqc","Roxygen",FALSE
-"roxygen2","== 7.3.1","base/remote","Roxygen",FALSE
-"roxygen2","== 7.3.1","base/settings","Roxygen",FALSE
-"roxygen2","== 7.3.1","base/utils","Roxygen",FALSE
-"roxygen2","== 7.3.1","base/visualization","Roxygen",FALSE
-"roxygen2","== 7.3.1","base/workflow","Roxygen",FALSE
-"roxygen2","== 7.3.1","models/basgra","Roxygen",FALSE
-"roxygen2","== 7.3.1","models/biocro","Roxygen",FALSE
-"roxygen2","== 7.3.1","models/cable","Roxygen",FALSE
-"roxygen2","== 7.3.1","models/clm45","Roxygen",FALSE
-"roxygen2","== 7.3.1","models/dalec","Roxygen",FALSE
-"roxygen2","== 7.3.1","models/dvmdostem","Roxygen",FALSE
-"roxygen2","== 7.3.1","models/ed","Roxygen",FALSE
-"roxygen2","== 7.3.1","models/fates","Roxygen",FALSE
-"roxygen2","== 7.3.1","models/gday","Roxygen",FALSE
-"roxygen2","== 7.3.1","models/jules","Roxygen",FALSE
-"roxygen2","== 7.3.1","models/ldndc","Roxygen",FALSE
-"roxygen2","== 7.3.1","models/linkages","Roxygen",FALSE
-"roxygen2","== 7.3.1","models/lpjguess","Roxygen",FALSE
-"roxygen2","== 7.3.1","models/maat","Roxygen",FALSE
-"roxygen2","== 7.3.1","models/maespa","Roxygen",FALSE
-"roxygen2","== 7.3.1","models/preles","Roxygen",FALSE
-"roxygen2","== 7.3.1","models/sibcasa","Roxygen",FALSE
-"roxygen2","== 7.3.1","models/sipnet","Roxygen",FALSE
-"roxygen2","== 7.3.1","models/stics","Roxygen",FALSE
-"roxygen2","== 7.3.1","models/template","Roxygen",FALSE
-"roxygen2","== 7.3.1","modules/allometry","Roxygen",FALSE
-"roxygen2","== 7.3.1","modules/assim.batch","Roxygen",FALSE
-"roxygen2","== 7.3.1","modules/benchmark","Roxygen",FALSE
-"roxygen2","== 7.3.1","modules/data.atmosphere","Roxygen",FALSE
-"roxygen2","== 7.3.1","modules/data.land","Roxygen",FALSE
-"roxygen2","== 7.3.1","modules/data.remote","Roxygen",FALSE
-"roxygen2","== 7.3.1","modules/emulator","Roxygen",FALSE
-"roxygen2","== 7.3.1","modules/meta.analysis","Roxygen",FALSE
-"roxygen2","== 7.3.1","modules/photosynthesis","Roxygen",FALSE
-"roxygen2","== 7.3.1","modules/priors","Roxygen",FALSE
-"roxygen2","== 7.3.1","modules/rtm","Roxygen",FALSE
-"roxygen2","== 7.3.1","modules/uncertainty","Roxygen",FALSE
+"roxygen2","== 7.3.2","base/all","Roxygen",FALSE
+"roxygen2","== 7.3.2","base/db","Roxygen",FALSE
+"roxygen2","== 7.3.2","base/logger","Roxygen",FALSE
+"roxygen2","== 7.3.2","base/qaqc","Roxygen",FALSE
+"roxygen2","== 7.3.2","base/remote","Roxygen",FALSE
+"roxygen2","== 7.3.2","base/settings","Roxygen",FALSE
+"roxygen2","== 7.3.2","base/utils","Roxygen",FALSE
+"roxygen2","== 7.3.2","base/visualization","Roxygen",FALSE
+"roxygen2","== 7.3.2","base/workflow","Roxygen",FALSE
+"roxygen2","== 7.3.2","models/basgra","Roxygen",FALSE
+"roxygen2","== 7.3.2","models/biocro","Roxygen",FALSE
+"roxygen2","== 7.3.2","models/cable","Roxygen",FALSE
+"roxygen2","== 7.3.2","models/clm45","Roxygen",FALSE
+"roxygen2","== 7.3.2","models/dalec","Roxygen",FALSE
+"roxygen2","== 7.3.2","models/dvmdostem","Roxygen",FALSE
+"roxygen2","== 7.3.2","models/ed","Roxygen",FALSE
+"roxygen2","== 7.3.2","models/fates","Roxygen",FALSE
+"roxygen2","== 7.3.2","models/gday","Roxygen",FALSE
+"roxygen2","== 7.3.2","models/jules","Roxygen",FALSE
+"roxygen2","== 7.3.2","models/ldndc","Roxygen",FALSE
+"roxygen2","== 7.3.2","models/linkages","Roxygen",FALSE
+"roxygen2","== 7.3.2","models/lpjguess","Roxygen",FALSE
+"roxygen2","== 7.3.2","models/maat","Roxygen",FALSE
+"roxygen2","== 7.3.2","models/maespa","Roxygen",FALSE
+"roxygen2","== 7.3.2","models/preles","Roxygen",FALSE
+"roxygen2","== 7.3.2","models/sibcasa","Roxygen",FALSE
+"roxygen2","== 7.3.2","models/sipnet","Roxygen",FALSE
+"roxygen2","== 7.3.2","models/stics","Roxygen",FALSE
+"roxygen2","== 7.3.2","models/template","Roxygen",FALSE
+"roxygen2","== 7.3.2","modules/allometry","Roxygen",FALSE
+"roxygen2","== 7.3.2","modules/assim.batch","Roxygen",FALSE
 "roxygen2","== 7.3.2","modules/assim.sequential","Roxygen",FALSE
+"roxygen2","== 7.3.2","modules/benchmark","Roxygen",FALSE
+"roxygen2","== 7.3.2","modules/data.atmosphere","Roxygen",FALSE
+"roxygen2","== 7.3.2","modules/data.land","Roxygen",FALSE
+"roxygen2","== 7.3.2","modules/data.remote","Roxygen",FALSE
+"roxygen2","== 7.3.2","modules/emulator","Roxygen",FALSE
+"roxygen2","== 7.3.2","modules/meta.analysis","Roxygen",FALSE
+"roxygen2","== 7.3.2","modules/photosynthesis","Roxygen",FALSE
+"roxygen2","== 7.3.2","modules/priors","Roxygen",FALSE
+"roxygen2","== 7.3.2","modules/rtm","Roxygen",FALSE
+"roxygen2","== 7.3.2","modules/uncertainty","Roxygen",FALSE
 "RPostgres","*","base/db","Suggests",FALSE
 "RPostgreSQL","*","base/db","Suggests",FALSE
 "RPostgreSQL","*","models/biocro","Suggests",FALSE
@@ -610,6 +613,7 @@
 "testthat",">= 3.0.4","base/qaqc","Suggests",FALSE
 "tibble","*","base/db","Imports",FALSE
 "tibble","*","models/ed","Imports",FALSE
+"tibble","*","models/fates","Imports",FALSE
 "tibble","*","models/lpjguess","Imports",FALSE
 "tibble","*","modules/data.atmosphere","Imports",FALSE
 "tibble","*","modules/data.remote","Suggests",FALSE