docker-compose.dev.yml

# mkdir -p volumes/{lib,pecan,portainer,postgres,rabbitmq,traefik}
# 
# docker-compose -f docker-compose.yml -f docker-compose.dev.yml

services:

  # web application. This expects the config.php to be copied from docker/web
  # cp docker/web/config.docker.php web/config.php
  #pecan:
  #  volumes:
  #    - 'pecan_web:/var/www/html/pecan'

  # executor can compile the code
  executor:
    volumes:
      - 'pecan_home:/pecan/'
      - 'R_library:/usr/local/lib/R/site-library/'

  # use same for R development in rstudio
  rstudio:
    volumes:
      - 'pecan_home:/pecan/'
      - 'pecan_home:/home/${PECAN_RSTUDIO_USER:-carya}/pecan/'
      - 'R_library:/usr/local/lib/R/site-library/'
    # add route to api for help when debugging plumber application. Same can
    # be used for other apps.
    #labels:
    #  - "traefik.http.routers.rstudio-api.rule=Host(`api.pecan.localhost`)"
    #  - "traefik.http.routers.rstudio-api.service=rstudio-api"
    #  - "traefik.http.services.rstudio-api.loadbalancer.server.port=8000"

  # use following as template for other models
  # this can be used if you are changng the code for a model in PEcAN
  sipnet:
    volumes:
      - 'R_library:/usr/local/lib/R/site-library/'

  # this will open postgres to the hostcompute
  #postgres:
  #  ports:
  #    - '5432:5432'

  # Allow to see all docker containers running, restart and see log files.
  #portainer:
  #  image: portainer/portainer:latest
  #  command:
  #    - --admin-password=${PORTAINER_PASSWORD:-}
  #    - --host=unix:///var/run/docker.sock
  #  restart: unless-stopped
  #  networks:
  #    - pecan
  #  labels:
  #    - "traefik.enable=true"
  #    - "traefik.backend=portainer"
  #    - "traefik.frontend.rule=${TRAEFIK_FRONTEND_RULE:-}PathPrefixStrip: /portainer"
  #    - "traefik.website.frontend.whiteList.sourceRange=${TRAEFIK_IPFILTER:-172.16.0.0/12}"
  #  volumes:
  #    - /var/run/docker.sock:/var/run/docker.sock
  #    - portainer:/data

# -----------------------------------------------------------------------
# Theser are the volumes mounted into the containers. For speed reasons
# it is best to use docker native containers (less important on Linux).
# The pecan_home and pecan_web are important since this allows us to
# share the PEcAn source code from local machine to docker containers.
# Volumes are placed outside of the PEcAn source tree to allow for
# optimized caching of the changed files.
# -----------------------------------------------------------------------
volumes:
  pecan_home:
    driver_opts:
      type: none
      device: '${PWD}'
      o: bind
  pecan_web:
    driver_opts:
      type: none
      device: '${PWD}/web/'
      o: bind
  R_library:
  #  driver_opts:
  #    type: none
  #    device: '${HOME}/volumes/pecan/R_library'
  #    o: bind
  #pecan:
  #  driver_opts:
  #    type: none
  #    device: '${HOME}/volumes/pecan/pecan'
  #    o: bind
  #traefik:
  #  driver_opts:
  #    type: none
  #    device: '${HOME}/volumes/pecan/traefik'
  #    o: bind
  #postgres:
  #  driver_opts:
  #    type: none
  #    device: '${HOME}/volumes/pecan/postgres'
  #    o: bind
  #rabbitmq:
  #  driver_opts:
  #    type: none
  #    device: '${HOME}/volumes/pecan/rabbitmq'
  #    o: bind
  portainer:
  #  driver_opts:
  #    type: none
  #    device: '${HOME}/volumes/pecan/portainer'
  #    o: bind