fixes for new check errors in R >= 4.4.0 (modules edition) #4594
Workflow file for this run
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| name: renderbook | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - develop | |
| tags: | |
| - '*' | |
| pull_request: | |
| merge_group: | |
| workflow_dispatch: | |
| jobs: | |
| bookdown: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| container: | |
| image: pecan/depends:R4.1 | |
| steps: | |
| # checkout source code | |
| - uses: actions/checkout@v4 | |
| # install bookdown | |
| - name: Install bookdown | |
| run: | | |
| Rscript \ | |
| -e 'repos <- c(getOption("repos"), sub(r"(\d{4}-\d{2}-\d{2})", "latest", getOption("repos")))' \ | |
| -e 'remotes::install_version("bookdown", ">= 0.31", dependencies = TRUE, upgrade = FALSE, repos = repos)' | |
| # copy files | |
| - name: copy extfiles | |
| run: | | |
| mkdir -p book_source/extfiles | |
| cp -f documentation/tutorials/01_Demo_Basic_Run/extfiles/* book_source/extfiles | |
| # compile PEcAn code | |
| - name: build needed modules | |
| run: | | |
| R CMD INSTALL base/logger | |
| R CMD INSTALL base/remote | |
| R CMD INSTALL base/utils | |
| # render book | |
| - name: Render Book | |
| run: | | |
| cd book_source | |
| Rscript -e 'options(bookdown.render.file_scope=FALSE); bookdown::render_book("index.Rmd", "bookdown::gitbook")' | |
| # save artifact | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: pecan-documentation | |
| path: book_source/_book/ | |
| # download documentation repo | |
| - name: Checkout documentation repo | |
| if: github.event_name == 'push' | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: ${{ github.repository_owner }}/pecan-documentation | |
| path: pecan-documentation | |
| token: ${{ secrets.GH_PAT }} | |
| # upload new documentation | |
| - name: publish to github | |
| if: github.event_name == 'push' | |
| run: | | |
| git config --global user.email "[email protected]" | |
| git config --global user.name "GitHub Documentation Robot" | |
| export VERSION=$(echo $GITHUB_REF | sed 's,.*/,,' ) | |
| cd pecan-documentation | |
| mkdir -p $VERSION | |
| rsync -a --delete ../book_source/_book/ ${VERSION}/ | |
| git add --all * | |
| git commit -m "Build book from pecan revision ${GITHUB_SHA}" || true | |
| git push -q origin master |