-
Notifications
You must be signed in to change notification settings - Fork 0
/
allclasses-index.html
874 lines (872 loc) · 47.6 KB
/
allclasses-index.html
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
<!DOCTYPE HTML>
<!-- NewPage -->
<html lang="en">
<head>
<!-- Generated by javadoc (15) on Sat Aug 27 17:50:13 CEST 2022 -->
<title>All Classes</title>
<meta http-equiv="Content-Type" content="text/html; charset=utf-8">
<meta name="dc.created" content="2022-08-27">
<meta name="description" content="class index">
<meta name="generator" content="javadoc/AllClassesIndexWriter">
<link rel="stylesheet" type="text/css" href="stylesheet.css" title="Style">
<link rel="stylesheet" type="text/css" href="script-dir/jquery-ui.min.css" title="Style">
<link rel="stylesheet" type="text/css" href="jquery-ui.overrides.css" title="Style">
<script type="text/javascript" src="script.js"></script>
<script type="text/javascript" src="script-dir/jquery-3.5.1.min.js"></script>
<script type="text/javascript" src="script-dir/jquery-ui.min.js"></script>
</head>
<body class="all-classes-index-page">
<script type="text/javascript">var data = {"i0":2,"i1":2,"i2":2,"i3":2,"i4":2,"i5":2,"i6":2,"i7":2,"i8":2,"i9":2,"i10":4,"i11":2,"i12":2,"i13":2,"i14":1,"i15":1,"i16":2,"i17":2,"i18":2,"i19":2,"i20":8,"i21":2,"i22":2,"i23":2,"i24":2,"i25":2,"i26":2,"i27":1,"i28":2,"i29":32,"i30":2,"i31":2,"i32":2,"i33":2,"i34":2,"i35":2,"i36":2,"i37":2,"i38":2,"i39":2,"i40":2,"i41":2,"i42":1,"i43":1,"i44":1,"i45":2,"i46":2,"i47":1,"i48":1,"i49":2,"i50":1,"i51":2,"i52":4,"i53":2,"i54":1,"i55":2,"i56":2,"i57":2,"i58":2,"i59":2,"i60":2,"i61":4,"i62":2,"i63":2,"i64":2,"i65":2,"i66":1,"i67":2,"i68":1,"i69":1,"i70":1,"i71":1,"i72":2,"i73":2,"i74":1,"i75":1,"i76":2,"i77":1,"i78":1,"i79":1,"i80":1,"i81":1,"i82":2,"i83":2,"i84":2,"i85":2,"i86":2,"i87":4,"i88":2,"i89":2,"i90":2,"i91":2,"i92":4,"i93":4,"i94":2,"i95":2,"i96":2,"i97":2,"i98":2,"i99":2,"i100":2,"i101":2,"i102":2,"i103":2,"i104":2,"i105":2,"i106":2,"i107":2,"i108":2,"i109":2,"i110":2,"i111":2,"i112":2,"i113":2,"i114":2,"i115":2,"i116":2,"i117":2,"i118":32,"i119":2,"i120":4,"i121":32,"i122":1,"i123":2};
var tabs = {65535:["t0","All Classes"],1:["t1","Interface Summary"],2:["t2","Class Summary"],4:["t3","Enum Summary"],8:["t4","Exception Summary"],32:["t6","Annotation Types Summary"]};
var altColor = "alt-color";
var rowColor = "row-color";
var tableTab = "table-tab";
var activeTableTab = "active-table-tab";
var pathtoroot = "./";
loadScripts(document, 'script');</script>
<noscript>
<div>JavaScript is disabled on your browser.</div>
</noscript>
<div class="flex-box">
<header role="banner" class="flex-header">
<nav role="navigation">
<!-- ========= START OF TOP NAVBAR ======= -->
<div class="top-nav" id="navbar.top">
<div class="skip-nav"><a href="#skip.navbar.top" title="Skip navigation links">Skip navigation links</a></div>
<ul id="navbar.top.firstrow" class="nav-list" title="Navigation">
<li><a href="index.html">Overview</a></li>
<li>Package</li>
<li>Class</li>
<li>Use</li>
<li><a href="overview-tree.html">Tree</a></li>
<li><a href="deprecated-list.html">Deprecated</a></li>
<li><a href="index-files/index-1.html">Index</a></li>
<li><a href="help-doc.html">Help</a></li>
</ul>
</div>
<div class="sub-nav">
<div class="nav-list-search"><label for="search">SEARCH:</label>
<input type="text" id="search" value="search" disabled="disabled">
<input type="reset" id="reset" value="reset" disabled="disabled">
</div>
</div>
<!-- ========= END OF TOP NAVBAR ========= -->
<span class="skip-nav" id="skip.navbar.top">
<!-- -->
</span></nav>
</header>
<div class="flex-content">
<main role="main">
<div class="header">
<h1 title="All&nbsp;Classes" class="title">All Classes</h1>
</div>
<div class="type-summary" id="all-classes-table">
<div class="table-tabs" role="tablist" aria-orientation="horizontal"><button role="tab" aria-selected="true" aria-controls="all-classes-table.tabpanel" tabindex="0" onkeydown="switchTab(event)" id="t0" class="active-table-tab">All Classes</button><button role="tab" aria-selected="false" aria-controls="all-classes-table.tabpanel" tabindex="-1" onkeydown="switchTab(event)" id="t1" class="table-tab" onclick="show(1);">Interface Summary</button><button role="tab" aria-selected="false" aria-controls="all-classes-table.tabpanel" tabindex="-1" onkeydown="switchTab(event)" id="t2" class="table-tab" onclick="show(2);">Class Summary</button><button role="tab" aria-selected="false" aria-controls="all-classes-table.tabpanel" tabindex="-1" onkeydown="switchTab(event)" id="t3" class="table-tab" onclick="show(4);">Enum Summary</button><button role="tab" aria-selected="false" aria-controls="all-classes-table.tabpanel" tabindex="-1" onkeydown="switchTab(event)" id="t4" class="table-tab" onclick="show(8);">Exception Summary</button><button role="tab" aria-selected="false" aria-controls="all-classes-table.tabpanel" tabindex="-1" onkeydown="switchTab(event)" id="t6" class="table-tab" onclick="show(32);">Annotation Types Summary</button></div>
<div id="all-classes-table.tabpanel" role="tabpanel">
<table class="summary-table" aria-labelledby="t0">
<thead>
<tr>
<th class="col-first" scope="col">Class</th>
<th class="col-last" scope="col">Description</th>
</tr>
</thead>
<tbody>
<tr class="alt-color" id="i0">
<td class="col-first"><a href="org/pathvisio/libgpml/model/connector/AbstractConnector.html" title="class in org.pathvisio.libgpml.model.connector">AbstractConnector</a></td>
<th class="col-last" scope="row">
<div class="block">Abstract connector shape implementation that deals with cached shapes,
segments and waypoints.</div>
</th>
</tr>
<tr class="row-color" id="i1">
<td class="col-first"><a href="org/pathvisio/libgpml/io/AbstractPathwayModelFormat.html" title="class in org.pathvisio.libgpml.io">AbstractPathwayModelFormat</a></td>
<th class="col-last" scope="row">
<div class="block">base implementation of PathwayImporter and PathwayExporter warnings
mechanism.</div>
</th>
</tr>
<tr class="alt-color" id="i2">
<td class="col-first"><a href="org/pathvisio/libgpml/model/shape/AbstractShape.html" title="class in org.pathvisio.libgpml.model.shape">AbstractShape</a></td>
<th class="col-last" scope="row">
<div class="block">Class for shapes.</div>
</th>
</tr>
<tr class="row-color" id="i3">
<td class="col-first"><a href="org/pathvisio/libgpml/model/shape/AnchorShape.html" title="class in org.pathvisio.libgpml.model.shape">AnchorShape</a></td>
<th class="col-last" scope="row">
<div class="block">AnchorShape is responsible for defining the graphic for Anchors, similar to
ArrowShape for Arrows.</div>
</th>
</tr>
<tr class="alt-color" id="i4">
<td class="col-first"><a href="org/pathvisio/libgpml/model/shape/AnchorShapeRegistry.html" title="class in org.pathvisio.libgpml.model.shape">AnchorShapeRegistry</a></td>
<th class="col-last" scope="row">
<div class="block">Defines and registers all Anchor shapes.</div>
</th>
</tr>
<tr class="row-color" id="i5">
<td class="col-first"><a href="org/pathvisio/libgpml/model/type/AnchorShapeType.html" title="class in org.pathvisio.libgpml.model.type">AnchorShapeType</a></td>
<th class="col-last" scope="row">
<div class="block">This class contains extensible enum for Anchor type property.</div>
</th>
</tr>
<tr class="alt-color" id="i6">
<td class="col-first"><a href="org/pathvisio/libgpml/model/Annotation.html" title="class in org.pathvisio.libgpml.model">Annotation</a></td>
<th class="col-last" scope="row">
<div class="block">This class stores information for an Annotation.</div>
</th>
</tr>
<tr class="row-color" id="i7">
<td class="col-first"><a href="org/pathvisio/libgpml/model/type/AnnotationType.html" title="class in org.pathvisio.libgpml.model.type">AnnotationType</a></td>
<th class="col-last" scope="row">
<div class="block">This class contains extensible enum for Annotation type property.</div>
</th>
</tr>
<tr class="alt-color" id="i8">
<td class="col-first"><a href="org/pathvisio/libgpml/model/type/ArrowHeadType.html" title="class in org.pathvisio.libgpml.model.type">ArrowHeadType</a></td>
<th class="col-last" scope="row">
<div class="block">This class contains extensible enum pattern for different arrow head types.</div>
</th>
</tr>
<tr class="row-color" id="i9">
<td class="col-first"><a href="org/pathvisio/libgpml/model/shape/ArrowShape.html" title="class in org.pathvisio.libgpml.model.shape">ArrowShape</a></td>
<th class="col-last" scope="row">
<div class="block">ArrowShapes determine how the ending of a line can be drawn.</div>
</th>
</tr>
<tr class="alt-color" id="i10">
<td class="col-first"><a href="org/pathvisio/libgpml/model/shape/ArrowShape.FillType.html" title="enum in org.pathvisio.libgpml.model.shape">ArrowShape.FillType</a></td>
<th class="col-last" scope="row">
<div class="block">Enumerates possible ways to combine the outline and body.</div>
</th>
</tr>
<tr class="row-color" id="i11">
<td class="col-first"><a href="org/pathvisio/libgpml/model/shape/ArrowShapeRegistry.html" title="class in org.pathvisio.libgpml.model.shape">ArrowShapeRegistry</a></td>
<th class="col-last" scope="row">
<div class="block">Defines and registers all arrowhead shapes.</div>
</th>
</tr>
<tr class="alt-color" id="i12">
<td class="col-first"><a href="org/pathvisio/libgpml/model/Citation.html" title="class in org.pathvisio.libgpml.model">Citation</a></td>
<th class="col-last" scope="row">
<div class="block">This class stores information for a Citation.</div>
</th>
</tr>
<tr class="row-color" id="i13">
<td class="col-first"><a href="org/pathvisio/libgpml/util/ColorUtils.html" title="class in org.pathvisio.libgpml.util">ColorUtils</a></td>
<th class="col-last" scope="row">
<div class="block">This utils class contains methods for converting <code>Color</code> to hexBinary
or color name <code>String</code>, and vice versa.</div>
</th>
</tr>
<tr class="alt-color" id="i14">
<td class="col-first"><a href="org/pathvisio/libgpml/model/connector/ConnectorRestrictions.html" title="interface in org.pathvisio.libgpml.model.connector">ConnectorRestrictions</a></td>
<th class="col-last" scope="row">
<div class="block">Methods to provide restrictions for the connector path</div>
</th>
</tr>
<tr class="row-color" id="i15">
<td class="col-first"><a href="org/pathvisio/libgpml/model/connector/ConnectorShape.html" title="interface in org.pathvisio.libgpml.model.connector">ConnectorShape</a></td>
<th class="col-last" scope="row">
<div class="block">Implement this to provide a line shape for connectors.</div>
</th>
</tr>
<tr class="alt-color" id="i16">
<td class="col-first"><a href="org/pathvisio/libgpml/model/connector/ConnectorShape.Segment.html" title="class in org.pathvisio.libgpml.model.connector">ConnectorShape.Segment</a></td>
<th class="col-last" scope="row">
<div class="block">A single segment of the connector path.</div>
</th>
</tr>
<tr class="row-color" id="i17">
<td class="col-first"><a href="org/pathvisio/libgpml/model/connector/ConnectorShape.WayPoint.html" title="class in org.pathvisio.libgpml.model.connector">ConnectorShape.WayPoint</a></td>
<th class="col-last" scope="row">
<div class="block">The class for a waypoint, a point through which the connector passes.</div>
</th>
</tr>
<tr class="alt-color" id="i18">
<td class="col-first"><a href="org/pathvisio/libgpml/model/connector/ConnectorShapeFactory.html" title="class in org.pathvisio.libgpml.model.connector">ConnectorShapeFactory</a></td>
<th class="col-last" scope="row">
<div class="block">Constructs connector shapes.</div>
</th>
</tr>
<tr class="row-color" id="i19">
<td class="col-first"><a href="org/pathvisio/libgpml/model/type/ConnectorType.html" title="class in org.pathvisio.libgpml.model.type">ConnectorType</a></td>
<th class="col-last" scope="row">
<div class="block">This class contains extensible enum for different connectorType property.</div>
</th>
</tr>
<tr class="alt-color" id="i20">
<td class="col-first"><a href="org/pathvisio/libgpml/io/ConverterException.html" title="class in org.pathvisio.libgpml.io">ConverterException</a></td>
<th class="col-last" scope="row">
<div class="block">Exception that occurs during import, export, save or load of a pathway model.</div>
</th>
</tr>
<tr class="row-color" id="i21">
<td class="col-first"><a href="org/pathvisio/libgpml/model/CopyElement.html" title="class in org.pathvisio.libgpml.model">CopyElement</a></td>
<th class="col-last" scope="row">
<div class="block">This class stores information for copied <a href="org/pathvisio/libgpml/model/PathwayElement.html" title="class in org.pathvisio.libgpml.model"><code>PathwayElement</code></a>.</div>
</th>
</tr>
<tr class="alt-color" id="i22">
<td class="col-first"><a href="org/pathvisio/libgpml/model/connector/CurvedConnectorShape.html" title="class in org.pathvisio.libgpml.model.connector">CurvedConnectorShape</a></td>
<th class="col-last" scope="row">
<div class="block">Implements a curved connector that draws curved lines between the segments.</div>
</th>
</tr>
<tr class="row-color" id="i23">
<td class="col-first"><a href="org/pathvisio/libgpml/model/DataNode.html" title="class in org.pathvisio.libgpml.model">DataNode</a></td>
<th class="col-last" scope="row">
<div class="block">This class stores information for a DataNode pathway element.</div>
</th>
</tr>
<tr class="alt-color" id="i24">
<td class="col-first"><a href="org/pathvisio/libgpml/model/type/DataNodeType.html" title="class in org.pathvisio.libgpml.model.type">DataNodeType</a></td>
<th class="col-last" scope="row">
<div class="block">This class contains extensible enum for DataNode type property.</div>
</th>
</tr>
<tr class="row-color" id="i25">
<td class="col-first"><a href="org/pathvisio/libgpml/debug/DebugList.html" title="class in org.pathvisio.libgpml.debug">DebugList</a><<a href="org/pathvisio/libgpml/debug/DebugList.html" title="type parameter in DebugList">E</a>></td>
<th class="col-last" scope="row">
<div class="block">This is a List that helps in the search for ConcurrentModification problems.</div>
</th>
</tr>
<tr class="alt-color" id="i26">
<td class="col-first"><a href="org/pathvisio/libgpml/debug/DebugList.DebugIterator.html" title="class in org.pathvisio.libgpml.debug">DebugList.DebugIterator</a><<a href="org/pathvisio/libgpml/debug/DebugList.DebugIterator.html" title="type parameter in DebugList.DebugIterator">E</a>></td>
<th class="col-last" scope="row">
<div class="block">An iterator to go with the DebugList.</div>
</th>
</tr>
<tr class="row-color" id="i27">
<td class="col-first"><a href="org/pathvisio/libgpml/model/Drawable.html" title="interface in org.pathvisio.libgpml.model">Drawable</a></td>
<th class="col-last" scope="row">
<div class="block">Interface for classes which can be drawn a pathway model canvas.</div>
</th>
</tr>
<tr class="alt-color" id="i28">
<td class="col-first"><a href="org/pathvisio/libgpml/model/connector/ElbowConnectorShape.html" title="class in org.pathvisio.libgpml.model.connector">ElbowConnectorShape</a></td>
<th class="col-last" scope="row">
<div class="block">ConnectorShape implementation for the elbow connector.</div>
</th>
</tr>
<tr class="row-color" id="i29">
<td class="col-first"><a href="org/pathvisio/libgpml/debug/EventDispatchThreadOnly.html" title="annotation in org.pathvisio.libgpml.debug">EventDispatchThreadOnly</a></td>
<th class="col-last" scope="row">
<div class="block">Indicates that this class or method should only be accessed by the Event
Dispatch Thread</div>
</th>
</tr>
<tr class="alt-color" id="i30">
<td class="col-first"><a href="org/pathvisio/libgpml/model/Evidence.html" title="class in org.pathvisio.libgpml.model">Evidence</a></td>
<th class="col-last" scope="row">
<div class="block">This class stores information for an Evidence.</div>
</th>
</tr>
<tr class="row-color" id="i31">
<td class="col-first"><a href="org/pathvisio/libgpml/util/FileUtils.html" title="class in org.pathvisio.libgpml.util">FileUtils</a></td>
<th class="col-last" scope="row">
<div class="block">Collection of static utility methods dealing with files.</div>
</th>
</tr>
<tr class="alt-color" id="i32">
<td class="col-first"><a href="org/pathvisio/libgpml/model/connector/FreeConnectorShape.html" title="class in org.pathvisio.libgpml.model.connector">FreeConnectorShape</a></td>
<th class="col-last" scope="row">
<div class="block">Implements a connector that draws straight lines between multiple waypoints.</div>
</th>
</tr>
<tr class="row-color" id="i33">
<td class="col-first"><a href="org/pathvisio/libgpml/model/GPML2013aFormatAbstract.html" title="class in org.pathvisio.libgpml.model">GPML2013aFormatAbstract</a></td>
<th class="col-last" scope="row">
<div class="block">Abstract class for GPML2013a format.</div>
</th>
</tr>
<tr class="alt-color" id="i34">
<td class="col-first"><a href="org/pathvisio/libgpml/model/GPML2013aFormatAbstract.AttributeInfo.html" title="class in org.pathvisio.libgpml.model">GPML2013aFormatAbstract.AttributeInfo</a></td>
<th class="col-last" scope="row">
<div class="block">Name of resource containing the gpml schema definition.</div>
</th>
</tr>
<tr class="row-color" id="i35">
<td class="col-first"><a href="org/pathvisio/libgpml/model/GPML2013aReader.html" title="class in org.pathvisio.libgpml.model">GPML2013aReader</a></td>
<th class="col-last" scope="row">
<div class="block">This class reads a PathwayModel from an input source (GPML 2013a).</div>
</th>
</tr>
<tr class="alt-color" id="i36">
<td class="col-first"><a href="org/pathvisio/libgpml/model/GPML2013aWriter.html" title="class in org.pathvisio.libgpml.model">GPML2013aWriter</a></td>
<th class="col-last" scope="row">
<div class="block">This class writes a PathwayModel to an output (GPML 2013a).</div>
</th>
</tr>
<tr class="row-color" id="i37">
<td class="col-first"><a href="org/pathvisio/libgpml/model/GPML2021FormatAbstract.html" title="class in org.pathvisio.libgpml.model">GPML2021FormatAbstract</a></td>
<th class="col-last" scope="row">
<div class="block">Read / write GPML files.</div>
</th>
</tr>
<tr class="alt-color" id="i38">
<td class="col-first"><a href="org/pathvisio/libgpml/model/GPML2021Reader.html" title="class in org.pathvisio.libgpml.model">GPML2021Reader</a></td>
<th class="col-last" scope="row">
<div class="block">This class reads a PathwayModel from an input source (GPML 2021).</div>
</th>
</tr>
<tr class="row-color" id="i39">
<td class="col-first"><a href="org/pathvisio/libgpml/model/GPML2021Writer.html" title="class in org.pathvisio.libgpml.model">GPML2021Writer</a></td>
<th class="col-last" scope="row">
<div class="block">This class writes a PathwayModel to an output (GPML 2021).</div>
</th>
</tr>
<tr class="alt-color" id="i40">
<td class="col-first"><a href="org/pathvisio/libgpml/model/GPMLFormat.html" title="class in org.pathvisio.libgpml.model">GPMLFormat</a></td>
<th class="col-last" scope="row">
<div class="block">Class responsible for interaction with Gpml format.</div>
</th>
</tr>
<tr class="row-color" id="i41">
<td class="col-first"><a href="org/pathvisio/libgpml/model/GPMLFormatAbstract.html" title="class in org.pathvisio.libgpml.model">GPMLFormatAbstract</a></td>
<th class="col-last" scope="row">
<div class="block">Abstract class for GPML format.</div>
</th>
</tr>
<tr class="alt-color" id="i42">
<td class="col-first"><a href="org/pathvisio/libgpml/model/GPMLFormatReader.html" title="interface in org.pathvisio.libgpml.model">GPMLFormatReader</a></td>
<th class="col-last" scope="row">
<div class="block">Interface for GPML reading.</div>
</th>
</tr>
<tr class="row-color" id="i43">
<td class="col-first"><a href="org/pathvisio/libgpml/model/GPMLFormatVersion.html" title="interface in org.pathvisio.libgpml.model">GPMLFormatVersion</a></td>
<th class="col-last" scope="row">
<div class="block">Interface for GPML format versions.</div>
</th>
</tr>
<tr class="alt-color" id="i44">
<td class="col-first"><a href="org/pathvisio/libgpml/model/GPMLFormatWriter.html" title="interface in org.pathvisio.libgpml.model">GPMLFormatWriter</a></td>
<th class="col-last" scope="row">
<div class="block">Interface for GPML writing.</div>
</th>
</tr>
<tr class="row-color" id="i45">
<td class="col-first"><a href="org/pathvisio/libgpml/model/GraphicalLine.html" title="class in org.pathvisio.libgpml.model">GraphicalLine</a></td>
<th class="col-last" scope="row">
<div class="block">This class stores information for GraphicalLine pathway element.</div>
</th>
</tr>
<tr class="alt-color" id="i46">
<td class="col-first"><a href="org/pathvisio/libgpml/model/GraphLink.html" title="class in org.pathvisio.libgpml.model">GraphLink</a></td>
<th class="col-last" scope="row">
<div class="block">This class only contains static methods and should not be instantiated.</div>
</th>
</tr>
<tr class="row-color" id="i47">
<td class="col-first"><a href="org/pathvisio/libgpml/model/GraphLink.LinkableFrom.html" title="interface in org.pathvisio.libgpml.model">GraphLink.LinkableFrom</a></td>
<th class="col-last" scope="row">
<div class="block">Classes which want to refer *to* a <a href="org/pathvisio/libgpml/model/GraphLink.LinkableTo.html" title="interface in org.pathvisio.libgpml.model"><code>GraphLink.LinkableTo</code></a> PathwayElement must
implement this interface.</div>
</th>
</tr>
<tr class="alt-color" id="i48">
<td class="col-first"><a href="org/pathvisio/libgpml/model/GraphLink.LinkableTo.html" title="interface in org.pathvisio.libgpml.model">GraphLink.LinkableTo</a></td>
<th class="col-last" scope="row">
<div class="block">PathwayElements which can be referred to must implement this interface.</div>
</th>
</tr>
<tr class="row-color" id="i49">
<td class="col-first"><a href="org/pathvisio/libgpml/model/Group.html" title="class in org.pathvisio.libgpml.model">Group</a></td>
<th class="col-last" scope="row">
<div class="block">This class stores all information relevant to a Group pathway element.</div>
</th>
</tr>
<tr class="alt-color" id="i50">
<td class="col-first"><a href="org/pathvisio/libgpml/model/Groupable.html" title="interface in org.pathvisio.libgpml.model">Groupable</a></td>
<th class="col-last" scope="row">
<div class="block">Interface for classes which can belong in a <a href="org/pathvisio/libgpml/model/Group.html" title="class in org.pathvisio.libgpml.model"><code>Group</code></a>.</div>
</th>
</tr>
<tr class="row-color" id="i51">
<td class="col-first"><a href="org/pathvisio/libgpml/model/type/GroupType.html" title="class in org.pathvisio.libgpml.model.type">GroupType</a></td>
<th class="col-last" scope="row">
<div class="block">This class contains extensible enum for Group type property.</div>
</th>
</tr>
<tr class="alt-color" id="i52">
<td class="col-first"><a href="org/pathvisio/libgpml/model/type/HAlignType.html" title="enum in org.pathvisio.libgpml.model.type">HAlignType</a></td>
<th class="col-last" scope="row">
<div class="block">This enum class contains possible values for horizontal text alignment
property.</div>
</th>
</tr>
<tr class="row-color" id="i53">
<td class="col-first"><a href="org/pathvisio/libgpml/model/Interaction.html" title="class in org.pathvisio.libgpml.model">Interaction</a></td>
<th class="col-last" scope="row">
<div class="block">This class stores information for an Interaction pathway element.</div>
</th>
</tr>
<tr class="alt-color" id="i54">
<td class="col-first"><a href="org/pathvisio/libgpml/model/shape/IShape.html" title="interface in org.pathvisio.libgpml.model.shape">IShape</a></td>
<th class="col-last" scope="row">
<div class="block">Interface for shapes.</div>
</th>
</tr>
<tr class="row-color" id="i55">
<td class="col-first"><a href="org/pathvisio/libgpml/model/Label.html" title="class in org.pathvisio.libgpml.model">Label</a></td>
<th class="col-last" scope="row">
<div class="block">This class stores all information relevant to a Label pathway element.</div>
</th>
</tr>
<tr class="alt-color" id="i56">
<td class="col-first"><a href="org/pathvisio/libgpml/util/LinAlg.html" title="class in org.pathvisio.libgpml.util">LinAlg</a></td>
<th class="col-last" scope="row">
<div class="block">Helper class for rotation calculations.</div>
</th>
</tr>
<tr class="row-color" id="i57">
<td class="col-first"><a href="org/pathvisio/libgpml/util/LinAlg.Point.html" title="class in org.pathvisio.libgpml.util">LinAlg.Point</a></td>
<th class="col-last" scope="row">
<div class="block">Point, pair of doubles.</div>
</th>
</tr>
<tr class="alt-color" id="i58">
<td class="col-first"><a href="org/pathvisio/libgpml/model/LineElement.html" title="class in org.pathvisio.libgpml.model">LineElement</a></td>
<th class="col-last" scope="row">
<div class="block">This abstract class stores information for a Line pathway element, e.g.</div>
</th>
</tr>
<tr class="row-color" id="i59">
<td class="col-first"><a href="org/pathvisio/libgpml/model/type/LineStyleType.html" title="class in org.pathvisio.libgpml.model.type">LineStyleType</a></td>
<th class="col-last" scope="row">
<div class="block">This class contains extensible enum for lineStyle or borderStyle property.</div>
</th>
</tr>
<tr class="alt-color" id="i60">
<td class="col-first"><a href="org/pathvisio/libgpml/debug/Logger.html" title="class in org.pathvisio.libgpml.debug">Logger</a></td>
<th class="col-last" scope="row">
<div class="block">Logs output to a stream, with the option to filter for types of messages</div>
</th>
</tr>
<tr class="row-color" id="i61">
<td class="col-first"><a href="org/pathvisio/libgpml/model/type/ObjectType.html" title="enum in org.pathvisio.libgpml.model.type">ObjectType</a></td>
<th class="col-last" scope="row">
<div class="block">Possible values for PathwayElement.getObjectType(), such as "DataNode" or
"Shape"</div>
</th>
</tr>
<tr class="alt-color" id="i62">
<td class="col-first"><a href="org/pathvisio/libgpml/model/Pathway.html" title="class in org.pathvisio.libgpml.model">Pathway</a></td>
<th class="col-last" scope="row">
<div class="block">The Pathway class stores information or metadata for a Pathway Model.</div>
</th>
</tr>
<tr class="row-color" id="i63">
<td class="col-first"><a href="org/pathvisio/libgpml/model/PathwayElement.html" title="class in org.pathvisio.libgpml.model">PathwayElement</a></td>
<th class="col-last" scope="row">
<div class="block">Abstract class of pathway elements which are part of a pathway, have an
elementId, have Comment,
Children: DataNode, State, Interaction, GraphicalLine, Label, Shape, Group.</div>
</th>
</tr>
<tr class="alt-color" id="i64">
<td class="col-first"><a href="org/pathvisio/libgpml/model/PathwayModel.html" title="class in org.pathvisio.libgpml.model">PathwayModel</a></td>
<th class="col-last" scope="row">
<div class="block">This class stores information for a Pathway model.</div>
</th>
</tr>
<tr class="row-color" id="i65">
<td class="col-first"><a href="org/pathvisio/libgpml/model/PathwayModel.StatusFlagEvent.html" title="class in org.pathvisio.libgpml.model">PathwayModel.StatusFlagEvent</a></td>
<th class="col-last" scope="row">
<div class="block">Event for a change in the "changed" status of this Pathway</div>
</th>
</tr>
<tr class="alt-color" id="i66">
<td class="col-first"><a href="org/pathvisio/libgpml/model/PathwayModel.StatusFlagListener.html" title="interface in org.pathvisio.libgpml.model">PathwayModel.StatusFlagListener</a></td>
<th class="col-last" scope="row">
<div class="block">Implement this interface if you want to be notified when the "changed" status
changes.</div>
</th>
</tr>
<tr class="row-color" id="i67">
<td class="col-first"><a href="org/pathvisio/libgpml/model/PathwayModelEvent.html" title="class in org.pathvisio.libgpml.model">PathwayModelEvent</a></td>
<th class="col-last" scope="row">
<div class="block">Used to notify listeners of changes to the model, i.e a Pathway or
PathwayElement.</div>
</th>
</tr>
<tr class="alt-color" id="i68">
<td class="col-first"><a href="org/pathvisio/libgpml/io/PathwayModelExporter.html" title="interface in org.pathvisio.libgpml.io">PathwayModelExporter</a></td>
<th class="col-last" scope="row">
<div class="block">Interface for an exporter that writes a pathway to a file.</div>
</th>
</tr>
<tr class="row-color" id="i69">
<td class="col-first"><a href="org/pathvisio/libgpml/io/PathwayModelImporter.html" title="interface in org.pathvisio.libgpml.io">PathwayModelImporter</a></td>
<th class="col-last" scope="row">
<div class="block">Implemented by classes that can import a pathway from various different
types.</div>
</th>
</tr>
<tr class="alt-color" id="i70">
<td class="col-first"><a href="org/pathvisio/libgpml/io/PathwayModelIO.html" title="interface in org.pathvisio.libgpml.io">PathwayModelIO</a></td>
<th class="col-last" scope="row">
<div class="block">Common methods for <a href="org/pathvisio/libgpml/io/PathwayModelImporter.html" title="interface in org.pathvisio.libgpml.io"><code>PathwayModelImporter</code></a>s and
<a href="org/pathvisio/libgpml/io/PathwayModelExporter.html" title="interface in org.pathvisio.libgpml.io"><code>PathwayModelExporter</code></a>s</div>
</th>
</tr>
<tr class="row-color" id="i71">
<td class="col-first"><a href="org/pathvisio/libgpml/model/PathwayModelListener.html" title="interface in org.pathvisio.libgpml.model">PathwayModelListener</a></td>
<th class="col-last" scope="row">
<div class="block">Implement this if you want to be notified of changes to a PathwayModel.</div>
</th>
</tr>
<tr class="alt-color" id="i72">
<td class="col-first"><a href="org/pathvisio/libgpml/model/PathwayObject.html" title="class in org.pathvisio.libgpml.model">PathwayObject</a></td>
<th class="col-last" scope="row">
<div class="block">Abstract class of pathway elements which are part of a pathway and have an
elementId.</div>
</th>
</tr>
<tr class="row-color" id="i73">
<td class="col-first"><a href="org/pathvisio/libgpml/model/PathwayObjectEvent.html" title="class in org.pathvisio.libgpml.model">PathwayObjectEvent</a></td>
<th class="col-last" scope="row">
<div class="block">This event is used to notify <a href="org/pathvisio/libgpml/model/PathwayObjectListener.html" title="interface in org.pathvisio.libgpml.model"><code>PathwayObjectListener</code></a>s of changes to
properties of a PathwayElement.</div>
</th>
</tr>
<tr class="alt-color" id="i74">
<td class="col-first"><a href="org/pathvisio/libgpml/model/PathwayObjectListener.html" title="interface in org.pathvisio.libgpml.model">PathwayObjectListener</a></td>
<th class="col-last" scope="row">
<div class="block">Implement this if you want to be notified of changes to properties of a
PathwayElement.</div>
</th>
</tr>
<tr class="row-color" id="i75">
<td class="col-first"><a href="org/pathvisio/libgpml/prop/Property.html" title="interface in org.pathvisio.libgpml.prop">Property</a></td>
<th class="col-last" scope="row">
<div class="block">This interface defines a typed property.</div>
</th>
</tr>
<tr class="alt-color" id="i76">
<td class="col-first"><a href="org/pathvisio/libgpml/prop/PropertyManager.html" title="class in org.pathvisio.libgpml.prop">PropertyManager</a></td>
<th class="col-last" scope="row">
<div class="block">This PropertyManager handles the registration/lookups of everything related
to TypedProperties.</div>
</th>
</tr>
<tr class="row-color" id="i77">
<td class="col-first"><a href="org/pathvisio/libgpml/prop/PropertyType.html" title="interface in org.pathvisio.libgpml.prop">PropertyType</a></td>
<th class="col-last" scope="row">
<div class="block">This interface represents a type (the <i>Type</i> in Property).</div>
</th>
</tr>
<tr class="alt-color" id="i78">
<td class="col-first"><a href="org/pathvisio/libgpml/model/Referenceable.html" title="interface in org.pathvisio.libgpml.model">Referenceable</a></td>
<th class="col-last" scope="row">
<div class="block">Interface for <a href="org/pathvisio/libgpml/model/Referenceable.Annotatable.html" title="interface in org.pathvisio.libgpml.model"><code>Referenceable.Annotatable</code></a>, <a href="org/pathvisio/libgpml/model/Referenceable.Citable.html" title="interface in org.pathvisio.libgpml.model"><code>Referenceable.Citable</code></a>, and <a href="org/pathvisio/libgpml/model/Referenceable.Evidenceable.html" title="interface in org.pathvisio.libgpml.model"><code>Referenceable.Evidenceable</code></a>.</div>
</th>
</tr>
<tr class="row-color" id="i79">
<td class="col-first"><a href="org/pathvisio/libgpml/model/Referenceable.Annotatable.html" title="interface in org.pathvisio.libgpml.model">Referenceable.Annotatable</a></td>
<th class="col-last" scope="row">
<div class="block">Interface for classes which can hold a <code>List</code> of <a href="org/pathvisio/libgpml/model/PathwayElement.AnnotationRef.html" title="class in org.pathvisio.libgpml.model"><code>PathwayElement.AnnotationRef</code></a>.</div>
</th>
</tr>
<tr class="alt-color" id="i80">
<td class="col-first"><a href="org/pathvisio/libgpml/model/Referenceable.Citable.html" title="interface in org.pathvisio.libgpml.model">Referenceable.Citable</a></td>
<th class="col-last" scope="row">
<div class="block">Interface for classes which can hold a <code>List</code> of <a href="org/pathvisio/libgpml/model/PathwayElement.CitationRef.html" title="class in org.pathvisio.libgpml.model"><code>PathwayElement.CitationRef</code></a>.</div>
</th>
</tr>
<tr class="row-color" id="i81">
<td class="col-first"><a href="org/pathvisio/libgpml/model/Referenceable.Evidenceable.html" title="interface in org.pathvisio.libgpml.model">Referenceable.Evidenceable</a></td>
<th class="col-last" scope="row">
<div class="block">Interface for classes which can hold a <code>List</code> of <a href="org/pathvisio/libgpml/model/PathwayElement.EvidenceRef.html" title="class in org.pathvisio.libgpml.model"><code>PathwayElement.EvidenceRef</code></a>.</div>
</th>
</tr>
<tr class="alt-color" id="i82">
<td class="col-first"><a href="org/pathvisio/libgpml/util/RootElementFinder.html" title="class in org.pathvisio.libgpml.util">RootElementFinder</a></td>
<th class="col-last" scope="row">
<div class="block">This is similar to com.sun.xml.internal.ws.message.RootElementSniffer,
perhaps can be re-used.</div>
</th>
</tr>
<tr class="row-color" id="i83">
<td class="col-first"><a href="org/pathvisio/libgpml/util/RootElementFinder.RootElementHandler.html" title="class in org.pathvisio.libgpml.util">RootElementFinder.RootElementHandler</a></td>
<th class="col-last" scope="row">
<div class="block">Root element handler class.</div>
</th>
</tr>
<tr class="alt-color" id="i84">
<td class="col-first"><a href="org/pathvisio/libgpml/model/connector/SegmentedConnector.html" title="class in org.pathvisio.libgpml.model.connector">SegmentedConnector</a></td>
<th class="col-last" scope="row">
<div class="block">Base class for segmented connectors.</div>
</th>
</tr>
<tr class="row-color" id="i85">
<td class="col-first"><a href="org/pathvisio/libgpml/model/Shape.html" title="class in org.pathvisio.libgpml.model">Shape</a></td>
<th class="col-last" scope="row">
<div class="block">This class stores all information relevant to a Shape pathway element.</div>
</th>
</tr>
<tr class="alt-color" id="i86">
<td class="col-first"><a href="org/pathvisio/libgpml/model/shape/ShapeCatalog.html" title="class in org.pathvisio.libgpml.model.shape">ShapeCatalog</a></td>
<th class="col-last" scope="row">
<div class="block">This class defines some shapes.</div>
</th>
</tr>
<tr class="row-color" id="i87">
<td class="col-first"><a href="org/pathvisio/libgpml/model/shape/ShapeCatalog.Internal.html" title="enum in org.pathvisio.libgpml.model.shape">ShapeCatalog.Internal</a></td>
<th class="col-last" scope="row">
<div class="block">these constants are internal, only for the switch statement below.</div>
</th>
</tr>
<tr class="alt-color" id="i88">
<td class="col-first"><a href="org/pathvisio/libgpml/model/ShapedElement.html" title="class in org.pathvisio.libgpml.model">ShapedElement</a></td>
<th class="col-last" scope="row">
<div class="block">This class stores information for shaped pathway element <a href="org/pathvisio/libgpml/model/DataNode.html" title="class in org.pathvisio.libgpml.model"><code>DataNode</code></a>,
<a href="org/pathvisio/libgpml/model/DataNode.State.html" title="class in org.pathvisio.libgpml.model"><code>DataNode.State</code></a>, <a href="org/pathvisio/libgpml/model/Label.html" title="class in org.pathvisio.libgpml.model"><code>Label</code></a>, <a href="org/pathvisio/libgpml/model/Shape.html" title="class in org.pathvisio.libgpml.model"><code>Shape</code></a>, and <a href="org/pathvisio/libgpml/model/Group.html" title="class in org.pathvisio.libgpml.model"><code>Group</code></a>.</div>
</th>
</tr>
<tr class="row-color" id="i89">
<td class="col-first"><a href="org/pathvisio/libgpml/model/shape/ShapeRegistry.html" title="class in org.pathvisio.libgpml.model.shape">ShapeRegistry</a></td>
<th class="col-last" scope="row">
<div class="block">The Shape registry stores all arrow heads and shapes
at this moment the shape registry initializes itself, by calling
registerShape() on BasicShapes, GenMAPPShapes and MIMShapes.</div>
</th>
</tr>
<tr class="alt-color" id="i90">
<td class="col-first"><a href="org/pathvisio/libgpml/model/type/ShapeType.html" title="class in org.pathvisio.libgpml.model.type">ShapeType</a></td>
<th class="col-last" scope="row">
<div class="block">This enum class contains extensible enum for Shape type property.</div>
</th>
</tr>
<tr class="row-color" id="i91">
<td class="col-first"><a href="org/pathvisio/libgpml/model/type/StateType.html" title="class in org.pathvisio.libgpml.model.type">StateType</a></td>
<th class="col-last" scope="row">
<div class="block">This class contains extensible enum for state types.</div>
</th>
</tr>
<tr class="alt-color" id="i92">
<td class="col-first"><a href="org/pathvisio/libgpml/prop/StaticProperty.html" title="enum in org.pathvisio.libgpml.prop">StaticProperty</a></td>
<th class="col-last" scope="row">
<div class="block">Static properties for ObjectTypes, linked in <a href="org/pathvisio/libgpml/model/PathwayObject.html" title="class in org.pathvisio.libgpml.model"><code>PathwayObject</code></a>.</div>
</th>
</tr>
<tr class="row-color" id="i93">
<td class="col-first"><a href="org/pathvisio/libgpml/prop/StaticPropertyType.html" title="enum in org.pathvisio.libgpml.prop">StaticPropertyType</a></td>
<th class="col-last" scope="row">
<div class="block">The properties in <a href="org/pathvisio/libgpml/prop/StaticProperty.html" title="enum in org.pathvisio.libgpml.prop"><code>StaticProperty</code></a> define properties of different
types, all the possible types are defined here.</div>
</th>
</tr>
<tr class="alt-color" id="i94">
<td class="col-first"><a href="org/pathvisio/libgpml/debug/StopWatch.html" title="class in org.pathvisio.libgpml.debug">StopWatch</a></td>
<th class="col-last" scope="row">
<div class="block">A simple helper class for speed optimizations.</div>
</th>
</tr>
<tr class="row-color" id="i95">
<td class="col-first"><a href="org/pathvisio/libgpml/model/connector/StraightConnectorShape.html" title="class in org.pathvisio.libgpml.model.connector">StraightConnectorShape</a></td>
<th class="col-last" scope="row">
<div class="block">Implements a straight connector Shape, i.e.</div>
</th>
</tr>
<tr class="alt-color" id="i96">
<td class="col-first"><a href="org/pathvisio/libgpml/model/Test.html" title="class in org.pathvisio.libgpml.model">Test</a></td>
<th class="col-last" scope="row">
<div class="block">Tests for libgpml model classes.</div>
</th>
</tr>
<tr class="row-color" id="i97">
<td class="col-first"><a href="org/pathvisio/libgpml/model/TestAlias.html" title="class in org.pathvisio.libgpml.model">TestAlias</a></td>
<th class="col-last" scope="row">
<div class="block">Tests for aliasRef of <a href="org/pathvisio/libgpml/model/DataNode.html" title="class in org.pathvisio.libgpml.model"><code>DataNode</code></a>.</div>
</th>
</tr>
<tr class="alt-color" id="i98">
<td class="col-first"><a href="org/pathvisio/libgpml/model/TestAnchor.html" title="class in org.pathvisio.libgpml.model">TestAnchor</a></td>
<th class="col-last" scope="row">
<div class="block">Test for <a href="org/pathvisio/libgpml/model/LineElement.Anchor.html" title="class in org.pathvisio.libgpml.model"><code>LineElement.Anchor</code></a>.</div>
</th>
</tr>
<tr class="row-color" id="i99">
<td class="col-first"><a href="org/pathvisio/libgpml/model/TestAnnotation.html" title="class in org.pathvisio.libgpml.model">TestAnnotation</a></td>
<th class="col-last" scope="row">
<div class="block">Tests for Annotation class.</div>
</th>
</tr>
<tr class="alt-color" id="i100">
<td class="col-first"><a href="org/pathvisio/libgpml/model/TestCitation.html" title="class in org.pathvisio.libgpml.model">TestCitation</a></td>
<th class="col-last" scope="row">
<div class="block">For testing Citation methods</div>
</th>
</tr>
<tr class="row-color" id="i101">
<td class="col-first"><a href="org/pathvisio/libgpml/util/TestColorUtils.html" title="class in org.pathvisio.libgpml.util">TestColorUtils</a></td>
<th class="col-last" scope="row">
<div class="block">Tests for ColorUtils class.</div>
</th>
</tr>
<tr class="alt-color" id="i102">
<td class="col-first"><a href="org/pathvisio/libgpml/model/TestCopy.html" title="class in org.pathvisio.libgpml.model">TestCopy</a></td>
<th class="col-last" scope="row">
<div class="block">Test for Clone methods.</div>
</th>
</tr>
<tr class="row-color" id="i103">
<td class="col-first"><a href="org/pathvisio/libgpml/model/type/TestDataNodeType.html" title="class in org.pathvisio.libgpml.model.type">TestDataNodeType</a></td>
<th class="col-last" scope="row">
<div class="block">Test for extensible enum class.</div>
</th>
</tr>
<tr class="alt-color" id="i104">
<td class="col-first"><a href="org/pathvisio/libgpml/debug/TestDebug.html" title="class in org.pathvisio.libgpml.debug">TestDebug</a></td>
<th class="col-last" scope="row">
<div class="block">Tests for debug.</div>
</th>
</tr>
<tr class="row-color" id="i105">
<td class="col-first"><a href="org/pathvisio/libgpml/model/TestElementId.html" title="class in org.pathvisio.libgpml.model">TestElementId</a></td>
<th class="col-last" scope="row">
<div class="block">Tests for elementId.</div>
</th>
</tr>
<tr class="alt-color" id="i106">
<td class="col-first"><a href="org/pathvisio/libgpml/model/TestEvidence.html" title="class in org.pathvisio.libgpml.model">TestEvidence</a></td>
<th class="col-last" scope="row">
<div class="block">For testing Evidence methods</div>
</th>
</tr>
<tr class="row-color" id="i107">
<td class="col-first"><a href="org/pathvisio/libgpml/model/TestGraph.html" title="class in org.pathvisio.libgpml.model">TestGraph</a></td>
<th class="col-last" scope="row">
<div class="block">Test graph properties of a pathway model.</div>
</th>
</tr>
<tr class="alt-color" id="i108">
<td class="col-first"><a href="org/pathvisio/libgpml/model/TestGraphLink.html" title="class in org.pathvisio.libgpml.model">TestGraphLink</a></td>
<th class="col-last" scope="row">
<div class="block">For testing methods for elementRef:</div>
</th>
</tr>
<tr class="row-color" id="i109">
<td class="col-first"><a href="org/pathvisio/libgpml/model/TestGroup.html" title="class in org.pathvisio.libgpml.model">TestGroup</a></td>
<th class="col-last" scope="row">
<div class="block">Test for <a href="org/pathvisio/libgpml/model/Group.html" title="class in org.pathvisio.libgpml.model"><code>Group</code></a>.</div>
</th>
</tr>
<tr class="alt-color" id="i110">
<td class="col-first"><a href="org/pathvisio/libgpml/model/TestGroupNested.html" title="class in org.pathvisio.libgpml.model">TestGroupNested</a></td>
<th class="col-last" scope="row">
<div class="block">Tests for nested <a href="org/pathvisio/libgpml/model/Group.html" title="class in org.pathvisio.libgpml.model"><code>Group</code></a>(s).</div>
</th>
</tr>
<tr class="row-color" id="i111">
<td class="col-first"><a href="org/pathvisio/libgpml/util/TestGroupRectPropertyUtils.html" title="class in org.pathvisio.libgpml.util">TestGroupRectPropertyUtils</a></td>
<th class="col-last" scope="row">
<div class="block">Tests for GroupRectPropertyUtils class, the utility class for finding group bounds.</div>
</th>
</tr>
<tr class="alt-color" id="i112">
<td class="col-first"><a href="org/pathvisio/libgpml/model/TestLinePoint.html" title="class in org.pathvisio.libgpml.model">TestLinePoint</a></td>
<th class="col-last" scope="row">
<div class="block">Test for <a href="org/pathvisio/libgpml/model/LineElement.LinePoint.html" title="class in org.pathvisio.libgpml.model"><code>LineElement.LinePoint</code></a>.</div>
</th>
</tr>
<tr class="row-color" id="i113">
<td class="col-first"><a href="org/pathvisio/libgpml/model/TestReferenceable.html" title="class in org.pathvisio.libgpml.model">TestReferenceable</a></td>
<th class="col-last" scope="row">
<div class="block">Tests for <a href="org/pathvisio/libgpml/model/Referenceable.html" title="interface in org.pathvisio.libgpml.model"><code>Referenceable</code></a>:</div>
</th>
</tr>
<tr class="alt-color" id="i114">
<td class="col-first"><a href="org/pathvisio/libgpml/model/connector/TestSegmentedConnector.html" title="class in org.pathvisio.libgpml.model.connector">TestSegmentedConnector</a></td>
<th class="col-last" scope="row">
<div class="block">Test for segmented connector.</div>
</th>
</tr>
<tr class="row-color" id="i115">
<td class="col-first"><a href="org/pathvisio/libgpml/model/TestState.html" title="class in org.pathvisio.libgpml.model">TestState</a></td>
<th class="col-last" scope="row">
<div class="block">Test for <a href="org/pathvisio/libgpml/model/DataNode.State.html" title="class in org.pathvisio.libgpml.model"><code>DataNode.State</code></a>.</div>
</th>
</tr>
<tr class="alt-color" id="i116">
<td class="col-first"><a href="org/pathvisio/libgpml/model/TestTemporary.html" title="class in org.pathvisio.libgpml.model">TestTemporary</a></td>
<th class="col-last" scope="row">
<div class="block">Test for random things.</div>
</th>
</tr>
<tr class="row-color" id="i117">
<td class="col-first"><a href="org/pathvisio/libgpml/util/TestXrefUtils.html" title="class in org.pathvisio.libgpml.util">TestXrefUtils</a></td>
<th class="col-last" scope="row">
<div class="block">Tests for XrefUtils class.</div>
</th>
</tr>
<tr class="alt-color" id="i118">
<td class="col-first"><a href="org/pathvisio/libgpml/debug/ThreadSafe.html" title="annotation in org.pathvisio.libgpml.debug">ThreadSafe</a></td>
<th class="col-last" scope="row">
<div class="block">Use this annotation to indicate that this method is Thread-safe, i.e.</div>
</th>
</tr>
<tr class="row-color" id="i119">
<td class="col-first"><a href="org/pathvisio/libgpml/util/Utils.html" title="class in org.pathvisio.libgpml.util">Utils</a></td>
<th class="col-last" scope="row">
<div class="block">Various utility functions.</div>
</th>
</tr>
<tr class="alt-color" id="i120">
<td class="col-first"><a href="org/pathvisio/libgpml/model/type/VAlignType.html" title="enum in org.pathvisio.libgpml.model.type">VAlignType</a></td>
<th class="col-last" scope="row">
<div class="block">This enum class contains possible values for vertical text alignment
property.</div>
</th>
</tr>
<tr class="row-color" id="i121">
<td class="col-first"><a href="org/pathvisio/libgpml/debug/WorkerThreadOnly.html" title="annotation in org.pathvisio.libgpml.debug">WorkerThreadOnly</a></td>
<th class="col-last" scope="row">
<div class="block">Indicates that this class or method should only be accessed by threads other
than the Event Dispatch Thread</div>
</th>
</tr>
<tr class="alt-color" id="i122">
<td class="col-first"><a href="org/pathvisio/libgpml/model/Xrefable.html" title="interface in org.pathvisio.libgpml.model">Xrefable</a></td>
<th class="col-last" scope="row">
<div class="block">Interface for classes which can have an <code>Xref</code>.</div>
</th>
</tr>
<tr class="row-color" id="i123">
<td class="col-first"><a href="org/pathvisio/libgpml/util/XrefUtils.html" title="class in org.pathvisio.libgpml.util">XrefUtils</a></td>
<th class="col-last" scope="row">
<div class="block">This utils class contains methods for checking DataSource and creating Xref.</div>
</th>
</tr>
</tbody>
</table>
</div>
</div>
</main>
<footer role="contentinfo">
<nav role="navigation">
<!-- ======= START OF BOTTOM NAVBAR ====== -->
<div class="bottom-nav" id="navbar.bottom">
<div class="skip-nav"><a href="#skip.navbar.bottom" title="Skip navigation links">Skip navigation links</a></div>
<ul id="navbar.bottom.firstrow" class="nav-list" title="Navigation">
<li><a href="index.html">Overview</a></li>
<li>Package</li>
<li>Class</li>
<li>Use</li>
<li><a href="overview-tree.html">Tree</a></li>
<li><a href="deprecated-list.html">Deprecated</a></li>
<li><a href="index-files/index-1.html">Index</a></li>
<li><a href="help-doc.html">Help</a></li>
</ul>
</div>
<!-- ======== END OF BOTTOM NAVBAR ======= -->
<span class="skip-nav" id="skip.navbar.bottom">
<!-- -->
</span></nav>
</footer>
</div>
</div>
</body>
</html>