build.xml

<?xml version="1.0"?>
<project name="org.pathvisio.biopax3" default="install" basedir="." xmlns:ivy="antlib:org.apache.ivy.ant">

  <property name="pathvisio.dir" value="../../common-bundles/trunk/"/>
  <property name="common.bundles" value="../../common-bundles/trunk"/>
  
  	<path id="project.class.path">
		<fileset dir="${pathvisio.dir}/modules">
			<include name="org.pathvisio.core.jar"/>
			<include name="org.pathvisio.gui.jar"/>
			<include name="org.pathvisio.desktop.jar"/>
		</fileset>
		<fileset dir="lib">
			<include name="paxtools*.jar"/>
		</fileset>
		<fileset dir="${pathvisio.dir}/lib">
			<include name="*jdom*.jar"/>
			<include name="felix*.jar"/>
			<include name="org.bridgedb.jar"/>
			<include name="org.bridgedb.bio.jar"/>
		</fileset>
		<fileset dir="${common.bundles}">
			<include name="*google.collect*.jar"/>
		</fileset>
	</path>

	<path id="test.class.path">
		<fileset dir="${pathvisio.dir}/modules">
			<include name="org.wikipathways.client.jar"/>
		</fileset>
		<fileset dir="${pathvisio.dir}/lib">
			<include name="org.junit*.jar"/>
		</fileset>
		<fileset dir="${common.bundles}">
			<include name="nl.helixsoft.util.xml*.jar"/>
			<!--use com.springsource.javax.xml.rpc.jar which contains class files-->
			<include name="com.springsource.javax.xml.rpc*.jar"/>
		</fileset>	
	</path>

	<import file="${common.bundles}/plugin-common.xml" />

	<target name="prepare">
		<unjar dest="build/classes">
        <fileset dir="lib">
            <include name="paxtools*.jar" />
        </fileset>    
    	</unjar>
	</target>

	<target name="install" depends="jar">
		<copy todir="${bundle.dest}">
			<fileset dir="${common.bundles}">
				<include name="*google.collect*.jar"/>
			</fileset>
  		</copy>	
	</target>

	<target name="test" depends="compile">
		<javac srcdir="test" debug="true" 
					destdir="build/classes"
					source="1.5">
			<classpath>
				<path refid="test.class.path"/>
				<path refid="project.class.path"/>
			</classpath>
		</javac>
		<junit printsummary="on" haltonfailure="true" fork="true" dir=".">
			<formatter type="brief" usefile="false"/>
			<classpath>
				<pathelement path="build/classes"/>
				<path refid="project.class.path"/>
				<path refid="test.class.path"/>
			</classpath>
			<batchtest>
				<fileset dir="test">
					<include name="**/*Test*.java"/>
				</fileset>
			</batchtest>
		</junit>
	</target>  
  
  <target name="webstart" depends="jar">
	<fail message="You must specify a keystore password for opening visioKeyStore: ant -Dkeystore.password=***** [ant target]">
		<condition>
			<not> <isset property="keystore.password"/> </not>
		</condition>
	</fail>
  	<mkdir dir="${webstart.dir}"/>
  	<copy file="${jar.name}" todir="${webstart.dir}"/>
  	<copy todir="${webstart.dir}">
		<fileset dir="${pathvisio.dir}">
  			<include name="pathvisio.jar"/>
			<include name="lib/**/*.jar"/>
		</fileset>
  	</copy>
  	<copy todir="${webstart.dir}/lib">
		<fileset dir="lib">
			<include name="**/*.jar"/>
		</fileset>
  	</copy>
	<copy todir="${webstart.dir}" file="Biopax3GPML.jnlp"/>
    <signjar alias="PV" lazy = "true" 
		storepass="${keystore.password}" keystore="${pathvisio.dir}/lib/visioKeyStore">
		<fileset dir="${webstart.dir}" includes="**/*.jar"/>
	</signjar>
  </target>

</project>