From d56aa1697d7a887a52020e9879811fbd884bf7c4 Mon Sep 17 00:00:00 2001 From: billy Date: Tue, 6 Dec 2022 14:07:45 -0500 Subject: [PATCH] removed -cg from PRIAM we're not doing complete-genomes --- MetaPro_commands.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/MetaPro_commands.py b/MetaPro_commands.py index 794b593..8c23eb3 100644 --- a/MetaPro_commands.py +++ b/MetaPro_commands.py @@ -3034,7 +3034,7 @@ def create_EC_PRIAM_command_v2(self, current_stage_name, ga_final_merge_stage, p PRIAM_command += " -p " + self.tool_path_obj.PriamDB PRIAM_command += " -o " + priam_out_folder PRIAM_command += " --np " + self.threads_str - PRIAM_command += " --bh --cc --cg --bp --bd " + PRIAM_command += " --bh --cc --bp --bd " PRIAM_command += self.tool_path_obj.BLAST_dir make_marker = "touch" + " "