We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
lazy-load database '/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/premessa/R/premessa.rdb' is corrupt
sessionInfo() R version 4.2.2 (2022-10-31) Platform: aarch64-apple-darwin20 (64-bit) Running under: macOS Ventura 13.2.1
Matrix products: default LAPACK: /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libRlapack.dylib
locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages: [1] grid stats4 stats graphics grDevices utils datasets methods base
other attached packages: [1] shiny_1.7.4 premessa_0.3.4 BiocManager_1.30.19 RColorBrewer_1.1-3 viridis_0.6.2 [6] viridisLite_0.4.1 ggbeeswarm_0.7.1 ggridges_0.5.4 readxl_1.4.2 uwot_0.1.14 [11] Matrix_1.5-3 boot_1.3-28.1 MASS_7.3-58.2 magrittr_2.0.3 scico_1.3.1 [16] devtools_2.4.5 usethis_2.1.6 reshape2_1.4.4 doBy_4.6.16 FlowSOM_2.6.0 [21] igraph_1.4.0 gdata_2.18.0.1 pheatmap_1.0.12 paletteer_1.5.0 effsize_0.8.1 [26] patchwork_1.1.2.9000 lubridate_1.9.2 forcats_1.0.0 stringr_1.5.0 purrr_1.0.1 [31] readr_2.1.4 tidyr_1.3.0 tibble_3.1.8 tidyverse_2.0.0 ggrepel_0.9.3 [36] ggrastr_1.0.1 broom_1.0.3 dplyr_1.1.0 easypackages_0.1.0 ggcyto_1.26.4 [41] flowWorkspace_4.10.1 ncdfFlow_2.44.0 BH_1.81.0-1 ggplot2_3.4.1 flowCore_2.10.0 [46] cowplot_1.1.1 CATALYST_1.22.0 SingleCellExperiment_1.20.0 SummarizedExperiment_1.28.0 Biobase_2.58.0 [51] GenomicRanges_1.50.2 GenomeInfoDb_1.34.9 IRanges_2.32.0 S4Vectors_0.36.1 BiocGenerics_0.44.0 [56] MatrixGenerics_1.10.0 matrixStats_0.63.0
loaded via a namespace (and not attached): [1] scattermore_0.8 ragg_1.2.5 SeuratObject_4.1.3 knitr_1.42 irlba_2.3.5.1 [6] multcomp_1.4-22 DelayedArray_0.24.0 data.table_1.14.8 RCurl_1.98-1.10 doParallel_1.0.17 [11] generics_0.1.3 ScaledMatrix_1.6.0 callr_3.7.3 TH.data_1.1-1 RANN_2.6.1 [16] future_1.31.0 tzdb_0.3.0 spatstat.data_3.0-0 httpuv_1.6.9 assertthat_0.2.1 [21] xfun_0.37 jquerylib_0.1.4 hms_1.1.2 evaluate_0.20 promises_1.2.0.1 [26] fansi_1.0.4 Rgraphviz_2.42.0 DBI_1.1.3 htmlwidgets_1.6.1 reshape_0.8.9 [31] spatstat.geom_3.0-6 ellipsis_0.3.2 ggnewscale_0.4.8 ggpubr_0.6.0 backports_1.4.1 [36] cytolib_2.10.0 deldir_1.0-6 sparseMatrixStats_1.10.0 vctrs_0.5.2 remotes_2.4.2 [41] ROCR_1.0-11 abind_1.4-5 cachem_1.0.6 withr_2.5.0 ggforce_0.4.1 [46] progressr_0.13.0 sctransform_0.3.5 prettyunits_1.1.1 goftest_1.2-3 cluster_2.1.4 [51] lazyeval_0.2.2 crayon_1.5.2 drc_3.0-1 spatstat.explore_3.0-6 pkgconfig_2.0.3 [56] labeling_0.4.2 tweenr_2.0.2 nlme_3.1-162 vipor_0.4.5 pkgload_1.3.2 [61] rlang_1.0.6 globals_0.16.2 lifecycle_1.0.3 miniUI_0.1.1.1 sandwich_3.0-2 [66] rsvd_1.0.5 rprojroot_2.0.3 cellranger_1.1.0 polyclip_1.10-4 lmtest_0.9-40 [71] graph_1.76.0 carData_3.0-5 zoo_1.8-11 beeswarm_0.4.0 GlobalOptions_0.1.2 [76] processx_3.8.0 png_0.1-8 rjson_0.2.21 bitops_1.0-7 ConsensusClusterPlus_1.62.0 [81] KernSmooth_2.23-20 DelayedMatrixStats_1.20.0 shape_1.4.6 parallelly_1.34.0 spatstat.random_3.1-3 [86] shinyjqui_0.4.1 rstatix_0.7.2 ggsignif_0.6.4 beachmat_2.14.0 scales_1.2.1 [91] memoise_2.0.1 plyr_1.8.8 hexbin_1.28.2 ica_1.0-3 zlibbioc_1.44.0 [96] compiler_4.2.2 plotrix_3.8-2 clue_0.3-64 fitdistrplus_1.1-8 cli_3.6.0 [101] urlchecker_1.0.1 XVector_0.38.0 listenv_0.9.0 pbapply_1.7-0 ps_1.7.2 [106] tidyselect_1.2.0 stringi_1.7.12 RProtoBufLib_2.10.0 textshaping_0.3.6 yaml_2.3.7 [111] BiocSingular_1.14.0 sass_0.4.5 timechange_0.2.0 tools_4.2.2 future.apply_1.10.0 [116] parallel_4.2.2 circlize_0.4.15 rstudioapi_0.14 foreach_1.5.2 gridExtra_2.3 [121] farver_2.1.1 Rtsne_0.16 digest_0.6.31 Rcpp_1.0.10 microbenchmark_1.4.9 [126] car_3.1-1 scuttle_1.8.4 later_1.3.0 RcppAnnoy_0.0.20 httr_1.4.4 [131] ComplexHeatmap_2.14.0 Deriv_4.1.3 colorspace_2.1-0 XML_3.99-0.13 fs_1.6.1 [136] tensor_1.5 reticulate_1.28 splines_4.2.2 rematch2_2.1.2 spatstat.utils_3.0-1 [141] scater_1.26.1 sp_1.6-0 systemfonts_1.0.4 plotly_4.10.1 sessioninfo_1.2.2 [146] xtable_1.8-4 jsonlite_1.8.4 R6_2.5.1 profvis_0.3.7 pillar_1.8.1 [151] htmltools_0.5.4 mime_0.12 nnls_1.4 glue_1.6.2 fastmap_1.1.0 [156] BiocParallel_1.32.5 BiocNeighbors_1.16.0 codetools_0.2-19 pkgbuild_1.4.0 mvtnorm_1.1-3 [161] utf8_1.2.3 bslib_0.4.2 lattice_0.20-45 spatstat.sparse_3.0-0 curl_5.0.0 [166] leiden_0.4.3 colorRamps_2.3.1 gtools_3.9.4 survival_3.5-3 rmarkdown_2.20 [171] desc_1.4.2 munsell_0.5.0 GetoptLong_1.0.5 GenomeInfoDbData_1.2.9 iterators_1.0.14 [176] gtable_0.3.1 Seurat_4.3.0
The text was updated successfully, but these errors were encountered:
No branches or pull requests
lazy-load database '/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/premessa/R/premessa.rdb' is corrupt
Matrix products: default
LAPACK: /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] grid stats4 stats graphics grDevices utils datasets methods base
other attached packages:
[1] shiny_1.7.4 premessa_0.3.4 BiocManager_1.30.19 RColorBrewer_1.1-3 viridis_0.6.2
[6] viridisLite_0.4.1 ggbeeswarm_0.7.1 ggridges_0.5.4 readxl_1.4.2 uwot_0.1.14
[11] Matrix_1.5-3 boot_1.3-28.1 MASS_7.3-58.2 magrittr_2.0.3 scico_1.3.1
[16] devtools_2.4.5 usethis_2.1.6 reshape2_1.4.4 doBy_4.6.16 FlowSOM_2.6.0
[21] igraph_1.4.0 gdata_2.18.0.1 pheatmap_1.0.12 paletteer_1.5.0 effsize_0.8.1
[26] patchwork_1.1.2.9000 lubridate_1.9.2 forcats_1.0.0 stringr_1.5.0 purrr_1.0.1
[31] readr_2.1.4 tidyr_1.3.0 tibble_3.1.8 tidyverse_2.0.0 ggrepel_0.9.3
[36] ggrastr_1.0.1 broom_1.0.3 dplyr_1.1.0 easypackages_0.1.0 ggcyto_1.26.4
[41] flowWorkspace_4.10.1 ncdfFlow_2.44.0 BH_1.81.0-1 ggplot2_3.4.1 flowCore_2.10.0
[46] cowplot_1.1.1 CATALYST_1.22.0 SingleCellExperiment_1.20.0 SummarizedExperiment_1.28.0 Biobase_2.58.0
[51] GenomicRanges_1.50.2 GenomeInfoDb_1.34.9 IRanges_2.32.0 S4Vectors_0.36.1 BiocGenerics_0.44.0
[56] MatrixGenerics_1.10.0 matrixStats_0.63.0
loaded via a namespace (and not attached):
[1] scattermore_0.8 ragg_1.2.5 SeuratObject_4.1.3 knitr_1.42 irlba_2.3.5.1
[6] multcomp_1.4-22 DelayedArray_0.24.0 data.table_1.14.8 RCurl_1.98-1.10 doParallel_1.0.17
[11] generics_0.1.3 ScaledMatrix_1.6.0 callr_3.7.3 TH.data_1.1-1 RANN_2.6.1
[16] future_1.31.0 tzdb_0.3.0 spatstat.data_3.0-0 httpuv_1.6.9 assertthat_0.2.1
[21] xfun_0.37 jquerylib_0.1.4 hms_1.1.2 evaluate_0.20 promises_1.2.0.1
[26] fansi_1.0.4 Rgraphviz_2.42.0 DBI_1.1.3 htmlwidgets_1.6.1 reshape_0.8.9
[31] spatstat.geom_3.0-6 ellipsis_0.3.2 ggnewscale_0.4.8 ggpubr_0.6.0 backports_1.4.1
[36] cytolib_2.10.0 deldir_1.0-6 sparseMatrixStats_1.10.0 vctrs_0.5.2 remotes_2.4.2
[41] ROCR_1.0-11 abind_1.4-5 cachem_1.0.6 withr_2.5.0 ggforce_0.4.1
[46] progressr_0.13.0 sctransform_0.3.5 prettyunits_1.1.1 goftest_1.2-3 cluster_2.1.4
[51] lazyeval_0.2.2 crayon_1.5.2 drc_3.0-1 spatstat.explore_3.0-6 pkgconfig_2.0.3
[56] labeling_0.4.2 tweenr_2.0.2 nlme_3.1-162 vipor_0.4.5 pkgload_1.3.2
[61] rlang_1.0.6 globals_0.16.2 lifecycle_1.0.3 miniUI_0.1.1.1 sandwich_3.0-2
[66] rsvd_1.0.5 rprojroot_2.0.3 cellranger_1.1.0 polyclip_1.10-4 lmtest_0.9-40
[71] graph_1.76.0 carData_3.0-5 zoo_1.8-11 beeswarm_0.4.0 GlobalOptions_0.1.2
[76] processx_3.8.0 png_0.1-8 rjson_0.2.21 bitops_1.0-7 ConsensusClusterPlus_1.62.0
[81] KernSmooth_2.23-20 DelayedMatrixStats_1.20.0 shape_1.4.6 parallelly_1.34.0 spatstat.random_3.1-3
[86] shinyjqui_0.4.1 rstatix_0.7.2 ggsignif_0.6.4 beachmat_2.14.0 scales_1.2.1
[91] memoise_2.0.1 plyr_1.8.8 hexbin_1.28.2 ica_1.0-3 zlibbioc_1.44.0
[96] compiler_4.2.2 plotrix_3.8-2 clue_0.3-64 fitdistrplus_1.1-8 cli_3.6.0
[101] urlchecker_1.0.1 XVector_0.38.0 listenv_0.9.0 pbapply_1.7-0 ps_1.7.2
[106] tidyselect_1.2.0 stringi_1.7.12 RProtoBufLib_2.10.0 textshaping_0.3.6 yaml_2.3.7
[111] BiocSingular_1.14.0 sass_0.4.5 timechange_0.2.0 tools_4.2.2 future.apply_1.10.0
[116] parallel_4.2.2 circlize_0.4.15 rstudioapi_0.14 foreach_1.5.2 gridExtra_2.3
[121] farver_2.1.1 Rtsne_0.16 digest_0.6.31 Rcpp_1.0.10 microbenchmark_1.4.9
[126] car_3.1-1 scuttle_1.8.4 later_1.3.0 RcppAnnoy_0.0.20 httr_1.4.4
[131] ComplexHeatmap_2.14.0 Deriv_4.1.3 colorspace_2.1-0 XML_3.99-0.13 fs_1.6.1
[136] tensor_1.5 reticulate_1.28 splines_4.2.2 rematch2_2.1.2 spatstat.utils_3.0-1
[141] scater_1.26.1 sp_1.6-0 systemfonts_1.0.4 plotly_4.10.1 sessioninfo_1.2.2
[146] xtable_1.8-4 jsonlite_1.8.4 R6_2.5.1 profvis_0.3.7 pillar_1.8.1
[151] htmltools_0.5.4 mime_0.12 nnls_1.4 glue_1.6.2 fastmap_1.1.0
[156] BiocParallel_1.32.5 BiocNeighbors_1.16.0 codetools_0.2-19 pkgbuild_1.4.0 mvtnorm_1.1-3
[161] utf8_1.2.3 bslib_0.4.2 lattice_0.20-45 spatstat.sparse_3.0-0 curl_5.0.0
[166] leiden_0.4.3 colorRamps_2.3.1 gtools_3.9.4 survival_3.5-3 rmarkdown_2.20
[171] desc_1.4.2 munsell_0.5.0 GetoptLong_1.0.5 GenomeInfoDbData_1.2.9 iterators_1.0.14
[176] gtable_0.3.1 Seurat_4.3.0
The text was updated successfully, but these errors were encountered: