diff --git a/.gitmodules b/.gitmodules index 68d9e11..6bc7de6 100644 --- a/.gitmodules +++ b/.gitmodules @@ -1,3 +1,3 @@ [submodule "workflows/wdl-common"] path = workflows/wdl-common - url = git@github.com:PacificBiosciences/wdl-common.git + url = ../wdl-common.git diff --git a/README.md b/README.md index 1b39212..13c6378 100644 --- a/README.md +++ b/README.md @@ -1,4 +1,4 @@ -

+

PacBio Human Assembly Pipeline

@@ -13,7 +13,7 @@ Workflow for running de novo assembly using human PacBio whole genome sequencing The assembly workflow performs _de novo_ assembly on samples and trios. -![De novo assembly workflow diagram](images/main.graphviz.svg "De novo assembly workflow diagram") +![De novo assembly workflow diagram](https://github.com/PacificBiosciences/HiFi-human-assembly-WDL/raw/main/images/main.graphviz.svg "De novo assembly workflow diagram") ## Setup @@ -21,7 +21,7 @@ Clone a tagged version of the git repository. Use the `--branch` flag to pull t ``` git clone \ - --depth 1 --branch v1.0.0 \ # for reproducibility + --depth 1 --branch v1.0.1 \ # for reproducibility --recursive \ # to clone submodule https://github.com/PacificBiosciences/HiFi-human-assembly-WDL.git ```