inputs.azure.json

{
  "de_novo_assembly.cohort": {
    "cohort_id": "String",
    "samples": [
      {
        "sample_id": "String",
        "movie_bams": [
          "File"
        ],
        "father_id": "String?",
        "mother_id": "String?",
        "run_de_novo_assembly": "Boolean"
      }
    ],
    "run_de_novo_assembly_trio": "Boolean"
  },
  "de_novo_assembly.references": [
    {
        "name": "GRCh38",
        "fasta": {
            "data": "/datasetpbrarediseases/dataset/GRCh38/human_GRCh38_no_alt_analysis_set.fasta",
            "data_index": "/datasetpbrarediseases/dataset/GRCh38/human_GRCh38_no_alt_analysis_set.fasta.fai"
        }
    },
    {
        "name": "chm13",
        "fasta": {
            "data": "/datasetpbrarediseases/dataset/CHM13/human_chm13v2.0_maskedY_rCRS.fasta",
            "data_index": "/datasetpbrarediseases/dataset/CHM13/human_chm13v2.0_maskedY_rCRS.fasta.fai"
        }
    }
  ],
  "de_novo_assembly.backend": "Azure",
  "de_novo_assembly.preemptible": "Boolean"
}