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non numeric values in drug_descriptor table that should be numeric #277

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ymahlich opened this issue Dec 19, 2024 · 0 comments
Open

non numeric values in drug_descriptor table that should be numeric #277

ymahlich opened this issue Dec 19, 2024 · 0 comments
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@ymahlich
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Some drug descriptor_value fields for certain structural_descriptors contain non-numeric faulty data where there probably should be a numeric value.
We should remove those entries during the build process, since some other structural_descriptors like morgan_fingerprint are inherently non-numeric and pose problems if the casting to numeric is done over the full drug_descriptor table.

Specific example:

Dataset: MPNST
structural_descriptor: AATS0s
improve_drug_id: SMI_1550
descriptor_value: 'missing intrinsic state for [...]'

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