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Figure 2 panels #57

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sgosline opened this issue Apr 6, 2022 · 3 comments
Open

Figure 2 panels #57

sgosline opened this issue Apr 6, 2022 · 3 comments
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@sgosline
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sgosline commented Apr 6, 2022

This is an issue for all panels of figure 2:
1- Barplot showing training error of subtype prediction
4- enrichment of NPM1 in predicted cluster 3
5- survival of patients in cluster 5
2- heatmap of all proteins in all signatures, with annotations of known c luster (From 159) or predicted cluster (from 51)
3- enrichment of signatures that predict each cluster

make sure to link all PRs related to this to the issue so we can track and close!

@CamiloPosso
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#65 , still working on getting errors for all three data types

@CamiloPosso
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Got all data type errors, updated plots on manuscript folder

@CamiloPosso
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CamiloPosso commented Apr 29, 2022

Nearly finished with the figure 2 plot scripts for both k = 4 and 5. Just need to complete the mutation enrichment using the predicted cluster membership.

CamiloPosso added a commit that referenced this issue May 2, 2022
Merging latest changes to figure 2 plots. All the plots from the issue (#57) have been added.
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