nanite (v0.6.0)
New feature: assemble and recover viral genomes.
Added a new feature called, --assemble-reads, to assemble and recover high-quality viral genomes.
- Updated the docker image and conda environment for new required dependencies: flye and viralFlye.
- To use the latest version of the pipeline, please re-build or create a new conda environment using the provided conda environment file. If you are using singularity, please pull the latest docker image using the using the cache sub command.
- Added new rules to assemble and recover high-quality viral genomes with flye and viralFlye, the recovered viralFlye genomes are aligned against our NCBI viral database and the results are visualized with krona.
- The interactive krona report can be found in the following location in the output directory:
{sample}/assembly/reports/{sample}_viralflye_classification.html.
- The interactive krona report can be found in the following location in the output directory:
Full Changelog: v0.5.1...v0.6.0