From afa702cefcdaa53e4b34cd5b566415f5b8243617 Mon Sep 17 00:00:00 2001
From: skchronicles <kuhnsa3@gmail.com>
Date: Thu, 6 Jun 2024 10:42:56 -0400
Subject: [PATCH] Adding plot coverage option to run usage

---
 docs/usage/run.md | 1 +
 1 file changed, 1 insertion(+)

diff --git a/docs/usage/run.md b/docs/usage/run.md
index 7970ff1..62e8925 100644
--- a/docs/usage/run.md
+++ b/docs/usage/run.md
@@ -18,6 +18,7 @@ $ mpox-seek run [--help] \
       [--additional-strains ADDITIONAL_STRAINS] \
       [--batch-id BATCH_ID] \
       [--bootstrap-trees] \
+      [--plot-coverage] \
       --input INPUT [INPUT ...] \
       --output OUTPUT
 ```